mRNA_L-elsbetiae_contig1062.592.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1062.592.1
Unique NamemRNA_L-elsbetiae_contig1062.592.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1062.592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1062contigL-elsbetiae_contig1062:10667..12966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size364
Cds size363
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1062.592.1prot_L-elsbetiae_contig1062.592.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1062 10667..12966 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815283.044006-CDS-L-elsbetiae_contig1062:10666..108021622815283.044006-CDS-L-elsbetiae_contig1062:10666..10802Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1062 10667..10802 +
1691682815.732672-CDS-L-elsbetiae_contig1062:10666..108021691682815.732672-CDS-L-elsbetiae_contig1062:10666..10802Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1062 10667..10802 +
1622815283.0573661-CDS-L-elsbetiae_contig1062:11694..117991622815283.0573661-CDS-L-elsbetiae_contig1062:11694..11799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1062 11695..11799 +
1691682815.746911-CDS-L-elsbetiae_contig1062:11694..117991691682815.746911-CDS-L-elsbetiae_contig1062:11694..11799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1062 11695..11799 +
1622815283.0712194-CDS-L-elsbetiae_contig1062:12844..129661622815283.0712194-CDS-L-elsbetiae_contig1062:12844..12966Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1062 12845..12966 +
1691682815.7556775-CDS-L-elsbetiae_contig1062:12844..129661691682815.7556775-CDS-L-elsbetiae_contig1062:12844..12966Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1062 12845..12966 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1062.592.1

>prot_L-elsbetiae_contig1062.592.1 ID=prot_L-elsbetiae_contig1062.592.1|Name=mRNA_L-elsbetiae_contig1062.592.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
LTPCLRLHRRSPMRETQTKMYFLPFASWAVPRDLSTSPSASSSKQDMASS
SSSRPVFKEQTCCHGTAVARAVLGPGQSSKEHTKKNKKNDKKNDNKVTKA
KSGKIGSWIVAHDDKGTPYW*
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mRNA from alignment at L-elsbetiae_contig1062:10667..12966+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1062.592.1 ID=mRNA_L-elsbetiae_contig1062.592.1|Name=mRNA_L-elsbetiae_contig1062.592.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2300bp|location=Sequence derived from alignment at L-elsbetiae_contig1062:10667..12966+ (Laminarionema elsbetiae ELsaHSoW15)
CTCACGCCCTGTTTACGGTTGCACCGAAGATCTCCCATGCGAGAGACCCA
AACAAAGATGTACTTCTTGCCTTTCGCATCCTGGGCGGTGCCTCGGGATT
TGAGTACAAGTCCGTCAGCGTCGTCGTCGAAACAAGGTGAGTAGAAAGAA
GAATCGACAGATAGGGAGGACGAACTCCGTGCAGTATCTGCTGCTGGGTT
ATTGCAGAGCCGAGATATCGACCTTGCTACAGATGTTATCAAGATCTGCC
CGCTTCTTGTGCCAGCATTCAAATCACTAGAAGTACGTCGGGTAGACGAG
ACGAGGATTTTATTTCAAAAATATTCGATCCGACACAATAGCCGTCCACA
CCGCACATGCTGACTGACTACTATCGGCAGGTAAAGGTCGAACTGGACTA
TCGCAGGGTGCACACTTTGTTAGCATGTAGTCTACATACCAATTTCCTAA
CGTGCACGCCGGAAATGCGTGTGTGTGCGCGCTGCCATCAAACACCGCCG
TACTCGAGGATACACAAGTCCTGTTGGTCGATTGTGTCGAAAAAAAAGAC
CGTGGTTGTGGCCATCTTTTGGGCAAAAATGTGGCAGGTAGCCCTACAGC
ATCGCTCTGTATGTTTGACGATGCGACTGCTCCCCCCTGTCCACGCAGCA
GACTAAATGACCTAACTTAAGTGCGCAACGCTGAGACACCATAACTACGG
TTGTACTGCAAGGACGATGAATTGCTGTACGGTAGGGACATCTCTCGTCC
CTTCCGCGTGAAAAGCACATGCGAACGCGTGAATCCGTACATGATCGGTC
CTGTATCAGGAACCGCAGCAGCCAAAGCAAGCTCGTATCAGCCGTTCGAT
ATACAAACAGAGTTGCACGGCGTGGAGCAGTCGTGCTTCATGTGCTTTCC
AAGGTCGTATGTAGCATCTATATACAACCCGTTTCGAAATATGTACTTGC
GAATAGCCCAAGTAATTTTTGGATCTTTTTGTACCCTGGTCGCGGGTGCG
TTTGCGTCTCTCCTCTCAAACTTGGCAGATATGGCGAGCTCCTCCTCCTC
CCGACCGGTGTTCAAAGAGCAAACGTGCTGCCATGGTACCGCTGTAGCAC
GTGCGGTGTTGGGACCTGGGCAGAGCAGCAAAGGTATTCGCAGACCTCAT
GATATTATTGTGTAGAACAGATAGATTCTGCTCAAGAAAGGAGAACTGTA
TATGATCGATCTATAAGCTCACCCACTCCTACCCGCCCTCTATAGTAGCG
TCTCCTGGTTTGGTGGACCATCCGGAACAATCTGTTTATCCTGATTATAG
AAACTCCAAAAGTCTCGATTTGGTCGAAATTTCCCGAATATTTTATGTTA
CAAAAATTGGGCACCACCTCCATGGCCTCGACCTTTTAGCAGAGACGTCC
GAAGGGCATGCCAAAAGAGTAACATAGGCGTCAAATGGACCCTTGTGCCT
CAACTTGTGGTGTGCTAAAATAGCGTTTTTGGGACGATCAGGTTATGGAA
GCATATGTCACGACTCTCACATCCAACGAAAGGCTACGAGGAGACGCAGT
GTGCTTCAATATTGTCTTAGAACAAACGCTAGCGACTTCAGCTGTGGCGG
TAGTCTCGTTTTGAAATGGCAGTGACGTTTGCCATATTTGAGACAACCTA
CAACAAACTTTGTACGAGTTTAGTTCAAGCACGGGCCCTGCAGCACAGAC
CAGAGAAATGAAGGCAACGCGAAAGTAGCTGTTGCCCTGATCTTTCAATG
AATATACTATGGTCGGGGCCAAGGAGATGGTGCCCCATTTCAAATTACGA
TGATGCTTAGTGTAAAAGAGAAAATGGAGCAAAAATCCGGTTGCGCCGCT
ATTTTACGGCCATTCTTCTGGAGTTTTACCGACCACGCGCAGACCACGTA
CTTTTTTGCCCGATGCGGACCACAAAACCCAACATGCCTTTGCGCCTTTT
TTGGGATTATGCTATTTCTTCTGAGCCTCCTAGTGGTGGTTGAACTAAAG
AGTTACCAAGTGGCAAGTTCATCTCGAGGAAGGCAAACAGTTTTGCGATG
ATTGTTGCCCTCAGGAATCTCCGACGTGCGGGATCGTTCTGGACTGTGAA
TTATTCTCGATCTTAAGCCCGCGCCGGCCGCGTGCGTGGAAAATTATTTG
CAACTCCCCATGTCCCCTGTTTGTGCAGAGCACACAAAGAAGAACAAGAA
GAACGACAAGAAGAACGACAATAAAGTGACCAAGGCCAAGTCTGGCAAAA
TCGGTTCGTGGATTGTCGCTCACGACGACAAGGGAACTCCTTACTGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1062:10667..12966+

>mRNA_L-elsbetiae_contig1062.592.1 ID=mRNA_L-elsbetiae_contig1062.592.1|Name=mRNA_L-elsbetiae_contig1062.592.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig1062:10667..12966+ (Laminarionema elsbetiae ELsaHSoW15)
CTCACGCCCTGTTTACGGTTGCACCGAAGATCTCCCATGCGAGAGACCCA
AACAAAGATGTACTTCTTGCCTTTCGCATCCTGGGCGGTGCCTCGGGATT
TGAGTACAAGTCCGTCAGCGTCGTCGTCGAAACAAGCTCACGCCCTGTTT
ACGGTTGCACCGAAGATCTCCCATGCGAGAGACCCAAACAAAGATGTACT
TCTTGCCTTTCGCATCCTGGGCGGTGCCTCGGGATTTGAGTACAAGTCCG
TCAGCGTCGTCGTCGAAACAAGATATGGCGAGCTCCTCCTCCTCCCGACC
GGTGTTCAAAGAGCAAACGTGCTGCCATGGTACCGCTGTAGCACGTGCGG
TGTTGGGACCTGGGCAGAGCAGCAAAGATATGGCGAGCTCCTCCTCCTCC
CGACCGGTGTTCAAAGAGCAAACGTGCTGCCATGGTACCGCTGTAGCACG
TGCGGTGTTGGGACCTGGGCAGAGCAGCAAAGAGCACACAAAGAAGAACA
AGAAGAACGACAAGAAGAACGACAATAAAGTGACCAAGGCCAAGTCTGGC
AAAATCGGTTCGTGGATTGTCGCTCACGACGACAAGGGAACTCCTTACTG
GTGAAGCACACAAAGAAGAACAAGAAGAACGACAAGAAGAACGACAATAA
AGTGACCAAGGCCAAGTCTGGCAAAATCGGTTCGTGGATTGTCGCTCACG
ACGACAAGGGAACTCCTTACTGGTGA
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