mRNA_L-elsbetiae_contig1062.590.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1062.590.1
Unique NamemRNA_L-elsbetiae_contig1062.590.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1062.590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1062contigL-elsbetiae_contig1062:3883..4795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size913
Cds size912
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815283.221896-CDS-L-elsbetiae_contig1062:3882..47941622815283.221896-CDS-L-elsbetiae_contig1062:3882..4794Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1062 3883..4794 +
1691682815.811341-CDS-L-elsbetiae_contig1062:3882..47941691682815.811341-CDS-L-elsbetiae_contig1062:3882..4794Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1062 3883..4794 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1062.590.1prot_L-elsbetiae_contig1062.590.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1062 3883..4794 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1062.590.1

>prot_L-elsbetiae_contig1062.590.1 ID=prot_L-elsbetiae_contig1062.590.1|Name=mRNA_L-elsbetiae_contig1062.590.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=304bp
TRASGSAPQTFSVRNNASGTGSGSRGGLERVGAGQVLPLQTRHTAPATSS
NAPSAAGAGAGLVGSSAAGVAAPRARCLGSPASFVPANIGVHPLRPRPRC
EAAAPQGARGVRRQKQRYECATREPRRAGQPRALTGRRRLMGPPRRLGGA
HRPSRLRCVPPSPPPSSSLVAPPADAATTTAAAASAAVVLNPGLLPVREV
VGASHDRRHSHEHPRASSSLDPFCRPNPSLRPALRGGLGGSVGRSNLRAA
AVGPPSSSAAAPACDISLSVLGRSQGRGGGGGGASHGTPMPSGGRAGIGG
AEPG
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mRNA from alignment at L-elsbetiae_contig1062:3883..4795+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1062.590.1 ID=mRNA_L-elsbetiae_contig1062.590.1|Name=mRNA_L-elsbetiae_contig1062.590.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=913bp|location=Sequence derived from alignment at L-elsbetiae_contig1062:3883..4795+ (Laminarionema elsbetiae ELsaHSoW15)
ACCCGAGCGTCCGGCTCGGCACCGCAAACTTTCAGTGTTAGAAACAACGC
GAGCGGCACGGGCAGCGGCAGCCGCGGTGGTCTAGAGAGGGTAGGCGCTG
GGCAAGTGCTGCCGCTGCAGACGCGACACACCGCCCCTGCCACCTCGTCG
AACGCGCCCTCTGCGGCGGGAGCGGGGGCCGGGCTGGTCGGGTCATCCGC
GGCAGGGGTAGCCGCGCCAAGAGCCCGTTGTCTTGGGTCGCCGGCGTCTT
TCGTGCCGGCCAACATTGGCGTTCACCCGCTGCGACCGCGCCCAAGGTGC
GAAGCCGCTGCGCCTCAGGGCGCGAGGGGGGTGCGGCGACAAAAGCAGCG
CTATGAATGTGCCACCCGAGAGCCGAGAAGAGCAGGGCAACCGCGCGCAC
TCACGGGGCGCCGACGGCTAATGGGGCCTCCTCGGCGTCTAGGGGGCGCT
CATCGTCCCTCTCGGCTACGCTGCGTACCGCCATCGCCGCCACCATCTTC
GTCGCTGGTAGCGCCTCCGGCAGACGCCGCCACCACCACCGCGGCGGCGG
CGTCAGCGGCGGTGGTGTTGAACCCAGGACTCCTTCCTGTGCGAGAGGTG
GTGGGGGCCAGCCACGACCGTCGACACAGCCACGAGCACCCGAGGGCAAG
CAGCAGCCTGGATCCATTCTGTCGTCCCAACCCCTCTTTGCGGCCCGCGC
TTCGAGGTGGTCTGGGCGGCAGCGTTGGGCGAAGCAACCTGCGTGCCGCC
GCCGTCGGACCTCCATCTTCTTCCGCTGCCGCTCCTGCGTGCGATATATC
TCTGTCTGTTCTTGGCAGGAGCCAAGGACGCGGCGGCGGCGGCGGTGGCG
CCTCTCACGGGACCCCGATGCCTAGCGGCGGCCGAGCTGGCATCGGAGGA
GCGGAGCCCGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1062:3883..4795+

>mRNA_L-elsbetiae_contig1062.590.1 ID=mRNA_L-elsbetiae_contig1062.590.1|Name=mRNA_L-elsbetiae_contig1062.590.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1824bp|location=Sequence derived from alignment at L-elsbetiae_contig1062:3883..4795+ (Laminarionema elsbetiae ELsaHSoW15)
ACCCGAGCGTCCGGCTCGGCACCGCAAACTTTCAGTGTTAGAAACAACGC
GAGCGGCACGGGCAGCGGCAGCCGCGGTGGTCTAGAGAGGGTAGGCGCTG
GGCAAGTGCTGCCGCTGCAGACGCGACACACCGCCCCTGCCACCTCGTCG
AACGCGCCCTCTGCGGCGGGAGCGGGGGCCGGGCTGGTCGGGTCATCCGC
GGCAGGGGTAGCCGCGCCAAGAGCCCGTTGTCTTGGGTCGCCGGCGTCTT
TCGTGCCGGCCAACATTGGCGTTCACCCGCTGCGACCGCGCCCAAGGTGC
GAAGCCGCTGCGCCTCAGGGCGCGAGGGGGGTGCGGCGACAAAAGCAGCG
CTATGAATGTGCCACCCGAGAGCCGAGAAGAGCAGGGCAACCGCGCGCAC
TCACGGGGCGCCGACGGCTAATGGGGCCTCCTCGGCGTCTAGGGGGCGCT
CATCGTCCCTCTCGGCTACGCTGCGTACCGCCATCGCCGCCACCATCTTC
GTCGCTGGTAGCGCCTCCGGCAGACGCCGCCACCACCACCGCGGCGGCGG
CGTCAGCGGCGGTGGTGTTGAACCCAGGACTCCTTCCTGTGCGAGAGGTG
GTGGGGGCCAGCCACGACCGTCGACACAGCCACGAGCACCCGAGGGCAAG
CAGCAGCCTGGATCCATTCTGTCGTCCCAACCCCTCTTTGCGGCCCGCGC
TTCGAGGTGGTCTGGGCGGCAGCGTTGGGCGAAGCAACCTGCGTGCCGCC
GCCGTCGGACCTCCATCTTCTTCCGCTGCCGCTCCTGCGTGCGATATATC
TCTGTCTGTTCTTGGCAGGAGCCAAGGACGCGGCGGCGGCGGCGGTGGCG
CCTCTCACGGGACCCCGATGCCTAGCGGCGGCCGAGCTGGCATCGGAGGA
GCGGAGCCCGGGACCCGAGCGTCCGGCTCGGCACCGCAAACTTTCAGTGT
TAGAAACAACGCGAGCGGCACGGGCAGCGGCAGCCGCGGTGGTCTAGAGA
GGGTAGGCGCTGGGCAAGTGCTGCCGCTGCAGACGCGACACACCGCCCCT
GCCACCTCGTCGAACGCGCCCTCTGCGGCGGGAGCGGGGGCCGGGCTGGT
CGGGTCATCCGCGGCAGGGGTAGCCGCGCCAAGAGCCCGTTGTCTTGGGT
CGCCGGCGTCTTTCGTGCCGGCCAACATTGGCGTTCACCCGCTGCGACCG
CGCCCAAGGTGCGAAGCCGCTGCGCCTCAGGGCGCGAGGGGGGTGCGGCG
ACAAAAGCAGCGCTATGAATGTGCCACCCGAGAGCCGAGAAGAGCAGGGC
AACCGCGCGCACTCACGGGGCGCCGACGGCTAATGGGGCCTCCTCGGCGT
CTAGGGGGCGCTCATCGTCCCTCTCGGCTACGCTGCGTACCGCCATCGCC
GCCACCATCTTCGTCGCTGGTAGCGCCTCCGGCAGACGCCGCCACCACCA
CCGCGGCGGCGGCGTCAGCGGCGGTGGTGTTGAACCCAGGACTCCTTCCT
GTGCGAGAGGTGGTGGGGGCCAGCCACGACCGTCGACACAGCCACGAGCA
CCCGAGGGCAAGCAGCAGCCTGGATCCATTCTGTCGTCCCAACCCCTCTT
TGCGGCCCGCGCTTCGAGGTGGTCTGGGCGGCAGCGTTGGGCGAAGCAAC
CTGCGTGCCGCCGCCGTCGGACCTCCATCTTCTTCCGCTGCCGCTCCTGC
GTGCGATATATCTCTGTCTGTTCTTGGCAGGAGCCAAGGACGCGGCGGCG
GCGGCGGTGGCGCCTCTCACGGGACCCCGATGCCTAGCGGCGGCCGAGCT
GGCATCGGAGGAGCGGAGCCCGGG
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