mRNA_L-elsbetiae_contig106.577.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig106.577.1
Unique NamemRNA_L-elsbetiae_contig106.577.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig106.577.1 vs. uniprot
Match: D8LIP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIP0_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 4.120e-60
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 GPRGTLKMLVGGAGQIKLTKDGRVLLHEMQIQHPTAMMIARSATAQDDVTGDGTTTSVLFTGELLRQAERYLSEGLHPRVLTEGFELAKEHALELLDTFRSTR 309
            GPRGTLKMLVGGAGQIKLTKDGRVLLHEMQIQHPTAMMIARSATAQDDVTGDGTTTSVLFTGELLRQAERYL+EGLHPRVLTEGFELAKEHALELLDTFRSTR
Sbjct:   40 GPRGTLKMLVGGAGQIKLTKDGRVLLHEMQIQHPTAMMIARSATAQDDVTGDGTTTSVLFTGELLRQAERYLTEGLHPRVLTEGFELAKEHALELLDTFRSTR 142
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BLAST of mRNA_L-elsbetiae_contig106.577.1 vs. uniprot
Match: A0A418EL66_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418EL66_9STRA)

HSP 1 Score: 169 bits (428), Expect = 4.610e-51
Identity = 82/100 (82.00%), Postives = 93/100 (93.00%), Query Frame = 1 
Query:    1 GPRGTLKMLVGGAGQIKLTKDGRVLLHEMQIQHPTAMMIARSATAQDDVTGDGTTTSVLFTGELLRQAERYLSEGLHPRVLTEGFELAKEHALELLDTFR 300
            GPRGTLKMLVGGAGQIKLTKDG VLLHEMQIQHPTA +IAR+ATAQDD+TGDGTT+SVLFTGELL+QAER+LS+GLHPR+L EGFELA+E AL +LD  +
Sbjct:   39 GPRGTLKMLVGGAGQIKLTKDGNVLLHEMQIQHPTAAVIARAATAQDDITGDGTTSSVLFTGELLKQAERFLSDGLHPRILAEGFELAREEALRVLDNIK 138
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BLAST of mRNA_L-elsbetiae_contig106.577.1 vs. uniprot
Match: A0A7R9YWJ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YWJ8_9STRA)

HSP 1 Score: 161 bits (408), Expect = 5.780e-49
Identity = 78/100 (78.00%), Postives = 91/100 (91.00%), Query Frame = 1 
Query:    1 GPRGTLKMLVGGAGQIKLTKDGRVLLHEMQIQHPTAMMIARSATAQDDVTGDGTTTSVLFTGELLRQAERYLSEGLHPRVLTEGFELAKEHALELLDTFR 300
            GPRGTLKMLVGGAGQIKLTKDG VLLHEMQIQHPTA MIAR+ATAQDDVTGDGTT++VL  GELLRQAERY +EGLHPRV+T+G+++A++  L+ LD F+
Sbjct:   19 GPRGTLKMLVGGAGQIKLTKDGNVLLHEMQIQHPTATMIARTATAQDDVTGDGTTSTVLLCGELLRQAERYAAEGLHPRVITDGYDVARDATLKFLDEFK 118
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BLAST of mRNA_L-elsbetiae_contig106.577.1 vs. uniprot
Match: A0A7S3GSF3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GSF3_9STRA)

HSP 1 Score: 165 bits (417), Expect = 4.720e-48
Identity = 80/100 (80.00%), Postives = 91/100 (91.00%), Query Frame = 1 
Query:    1 GPRGTLKMLVGGAGQIKLTKDGRVLLHEMQIQHPTAMMIARSATAQDDVTGDGTTTSVLFTGELLRQAERYLSEGLHPRVLTEGFELAKEHALELLDTFR 300
            GPRGTLKMLVGGAGQIK+TKDG VLLHEMQIQHPTAMMIAR+ATA DD  GDGTT+SVLFTGELL+QAERY SEGLHPR++TEG+E+AK+  LE L+ F+
Sbjct:   52 GPRGTLKMLVGGAGQIKITKDGNVLLHEMQIQHPTAMMIARAATAMDDQVGDGTTSSVLFTGELLKQAERYTSEGLHPRLITEGYEIAKDMVLEFLEGFK 151
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BLAST of mRNA_L-elsbetiae_contig106.577.1 vs. uniprot
Match: A0A4D9CV25_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CV25_9STRA)

HSP 1 Score: 169 bits (427), Expect = 8.120e-48
Identity = 81/100 (81.00%), Postives = 92/100 (92.00%), Query Frame = 1 
Query:    1 GPRGTLKMLVGGAGQIKLTKDGRVLLHEMQIQHPTAMMIARSATAQDDVTGDGTTTSVLFTGELLRQAERYLSEGLHPRVLTEGFELAKEHALELLDTFR 300
            GPRGTLKMLVGGAGQIK+TKDG VLLHEMQIQHPTA +IAR+ATAQDD+TGDGTTTSVL  GELL+QAER+LSEGLHPRV+ EG++LAK+  LE LDTF+
Sbjct:   40 GPRGTLKMLVGGAGQIKITKDGNVLLHEMQIQHPTASLIARTATAQDDITGDGTTTSVLLVGELLKQAERFLSEGLHPRVIAEGYDLAKDRVLEFLDTFK 139
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BLAST of mRNA_L-elsbetiae_contig106.577.1 vs. uniprot
Match: A0A7S2MSB4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MSB4_9STRA)

HSP 1 Score: 169 bits (427), Expect = 9.300e-48
Identity = 80/102 (78.43%), Postives = 94/102 (92.16%), Query Frame = 1 
Query:    1 GPRGTLKMLVGGAGQIKLTKDGRVLLHEMQIQHPTAMMIARSATAQDDVTGDGTTTSVLFTGELLRQAERYLSEGLHPRVLTEGFELAKEHALELLDTFRST 306
            GPRGTLKMLVGGAGQIK+TKDG VLLHEMQIQHPTAM+IAR+ATAQDD+TGDGTT++VL  GELLRQAER  +EGLHPRV+TEGFE+AK+H L+ L++F+ T
Sbjct:   47 GPRGTLKMLVGGAGQIKITKDGNVLLHEMQIQHPTAMLIARNATAQDDITGDGTTSAVLLCGELLRQAERVYAEGLHPRVITEGFEMAKDHTLDFLESFKKT 148
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BLAST of mRNA_L-elsbetiae_contig106.577.1 vs. uniprot
Match: A0A7S2V196_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V196_9STRA)

HSP 1 Score: 168 bits (426), Expect = 1.210e-47
Identity = 81/100 (81.00%), Postives = 94/100 (94.00%), Query Frame = 1 
Query:    1 GPRGTLKMLVGGAGQIKLTKDGRVLLHEMQIQHPTAMMIARSATAQDDVTGDGTTTSVLFTGELLRQAERYLSEGLHPRVLTEGFELAKEHALELLDTFR 300
            GPRGTLKMLVGGAGQIKLTKDGRVLLHEMQIQHPTA++IAR+ATAQDD+TGDGTT+SVL TGELL+QAERYL+EGLHPR LTEGF+LA++  L+ L+ F+
Sbjct:   40 GPRGTLKMLVGGAGQIKLTKDGRVLLHEMQIQHPTAVLIARTATAQDDITGDGTTSSVLLTGELLKQAERYLAEGLHPRSLTEGFDLARDRVLDFLEKFK 139
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BLAST of mRNA_L-elsbetiae_contig106.577.1 vs. uniprot
Match: A0A485LAF2_9STRA (Aste57867_17113 protein n=17 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485LAF2_9STRA)

HSP 1 Score: 167 bits (424), Expect = 2.320e-47
Identity = 81/100 (81.00%), Postives = 93/100 (93.00%), Query Frame = 1 
Query:    1 GPRGTLKMLVGGAGQIKLTKDGRVLLHEMQIQHPTAMMIARSATAQDDVTGDGTTTSVLFTGELLRQAERYLSEGLHPRVLTEGFELAKEHALELLDTFR 300
            GPRGTLKMLVGGAGQIKLTKDG VLLHEMQIQHPTA +IAR+ATAQDD+TGDGTT++VLFTGELL+QAER+LS+GLHPR+L EGFELA+E AL +LD  +
Sbjct:   39 GPRGTLKMLVGGAGQIKLTKDGNVLLHEMQIQHPTAAVIARAATAQDDITGDGTTSTVLFTGELLKQAERFLSDGLHPRILAEGFELAREEALRVLDRIK 138
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BLAST of mRNA_L-elsbetiae_contig106.577.1 vs. uniprot
Match: F0W2E6_9STRA (Unnamed protein product putative n=2 Tax=Albugo TaxID=65356 RepID=F0W2E6_9STRA)

HSP 1 Score: 166 bits (421), Expect = 5.290e-47
Identity = 80/102 (78.43%), Postives = 96/102 (94.12%), Query Frame = 1 
Query:    1 GPRGTLKMLVGGAGQIKLTKDGRVLLHEMQIQHPTAMMIARSATAQDDVTGDGTTTSVLFTGELLRQAERYLSEGLHPRVLTEGFELAKEHALELLDTFRST 306
            GPRGTLKMLVGGAGQIKLTKDG VLLHEMQIQHPTA +IAR+ATAQDDVTGDGTT++VLF GELL+QAER+L++GLHPR+L+EGFELAK+ AL +LD+ +++
Sbjct:   31 GPRGTLKMLVGGAGQIKLTKDGNVLLHEMQIQHPTASLIARAATAQDDVTGDGTTSTVLFIGELLKQAERFLTDGLHPRILSEGFELAKDKALSVLDSIKTS 132
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BLAST of mRNA_L-elsbetiae_contig106.577.1 vs. uniprot
Match: A0A7S2WV07_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WV07_9STRA)

HSP 1 Score: 166 bits (421), Expect = 6.160e-47
Identity = 78/102 (76.47%), Postives = 95/102 (93.14%), Query Frame = 1 
Query:    1 GPRGTLKMLVGGAGQIKLTKDGRVLLHEMQIQHPTAMMIARSATAQDDVTGDGTTTSVLFTGELLRQAERYLSEGLHPRVLTEGFELAKEHALELLDTFRST 306
            GPRGTLKMLVGGAGQI++TKDG+VLLHEMQIQHPTAM+IAR+ATAQDD+TGDGTT++VL  GELL+ A+RY +EGLHPRV+ EG+E AK+HALELLD+F+ +
Sbjct:   40 GPRGTLKMLVGGAGQIRITKDGKVLLHEMQIQHPTAMLIARTATAQDDITGDGTTSAVLLCGELLKMAQRYTTEGLHPRVICEGYEKAKDHALELLDSFKKS 141
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig106.577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIP0_ECTSI4.120e-6099.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A418EL66_9STRA4.610e-5182.00Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A7R9YWJ8_9STRA5.780e-4978.00Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S3GSF3_9STRA4.720e-4880.00Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A4D9CV25_9STRA8.120e-4881.00Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2MSB4_9STRA9.300e-4878.43Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2V196_9STRA1.210e-4781.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A485LAF2_9STRA2.320e-4781.00Aste57867_17113 protein n=17 Tax=Saprolegniaceae T... [more]
F0W2E6_9STRA5.290e-4778.43Unnamed protein product putative n=2 Tax=Albugo Ta... [more]
A0A7S2WV07_9STRA6.160e-4776.47Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig106contigL-elsbetiae_contig106:47156..47883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score188.3
Seed ortholog evalue1.6e-45
Seed eggNOG ortholog2880.D8LIP0
Preferred nameCCT6
KEGG koko:K09498,ko:K19401
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005832,GO:0005856,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0010035,GO:0010038,GO:0010043,GO:0016020,GO:0032991,GO:0042221,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046686,GO:0050896,GO:0051082,GO:0061077,GO:0101031
EggNOG free text desc.unfolded protein binding
EggNOG OGsCOG0459@1,KOG0359@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko03110,ko04147
Ec32 ortholog descriptionGroEL-like equatorial domain
Ec32 orthologEc-11_004600.1
Exons2
Model size312
Cds size291
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig106.577.1prot_L-elsbetiae_contig106.577.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig106 47177..47883 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815281.6358943-UTR-L-elsbetiae_contig106:47155..471761622815281.6358943-UTR-L-elsbetiae_contig106:47155..47176Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig106 47156..47176 +
1691682814.795938-UTR-L-elsbetiae_contig106:47155..471761691682814.795938-UTR-L-elsbetiae_contig106:47155..47176Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig106 47156..47176 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815281.6474335-CDS-L-elsbetiae_contig106:47176..472931622815281.6474335-CDS-L-elsbetiae_contig106:47176..47293Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig106 47177..47293 +
1691682814.8118567-CDS-L-elsbetiae_contig106:47176..472931691682814.8118567-CDS-L-elsbetiae_contig106:47176..47293Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig106 47177..47293 +
1622815281.6562843-CDS-L-elsbetiae_contig106:47709..478831622815281.6562843-CDS-L-elsbetiae_contig106:47709..47883Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig106 47710..47883 +
1691682814.8221672-CDS-L-elsbetiae_contig106:47709..478831691682814.8221672-CDS-L-elsbetiae_contig106:47709..47883Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig106 47710..47883 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig106.577.1

>prot_L-elsbetiae_contig106.577.1 ID=prot_L-elsbetiae_contig106.577.1|Name=mRNA_L-elsbetiae_contig106.577.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=97bp
MLVGGAGQIKLTKDGRVLLHEMQIQHPTAMMIARSATAQDDVTGDGTTTS
VLFTGELLRQAERYLSEGLHPRVLTEGFELAKEHALELLDTFRSTR*
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mRNA from alignment at L-elsbetiae_contig106:47156..47883+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig106.577.1 ID=mRNA_L-elsbetiae_contig106.577.1|Name=mRNA_L-elsbetiae_contig106.577.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=728bp|location=Sequence derived from alignment at L-elsbetiae_contig106:47156..47883+ (Laminarionema elsbetiae ELsaHSoW15)
GGGCCTCGTGGCACCCTGAAGATGCTCGTGGGCGGGGCGGGGCAGATCAA
GCTCACCAAAGACGGGCGGGTGCTGCTGCACGAGATGCAGATCCAGCACC
CCACCGCGATGATGATCGCCAGAAGTGCCACGGCACAGGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGACAAGAGAGGGGAAGACGGTGTTGTGTGCGA
ACTGATTATTGAGCCCATAGGTACTCAAAAGAGATTCTTGGTTGGCCGTA
TGTATGGTGGTGTGGTTGGTGTGCGCCAAGTGCATTTGGTTATCTATAAC
AAGTATCTAGATAGCTTCACACACCTACGGAATTTGTAAAATCGAACGAC
CACGTTTTTATTTTTTTTGAATTTACGCGCTGCGTTGATGCTGTTTAAAA
CACCTGCTTGTCTTATATTCATCTTCCGTGTTGTTGTTGTTCGTGTTGTG
TTTAAAACACTTGGTTGTCTTACTCGTCTTTGTGCGCGTTGATTGCGCGT
GTTGCCGTTCGTGTTGTTCGTGTTGTTGTCGCTGTTGTTGTTGTCGTCGT
TCAGGACGACGTGACTGGGGACGGGACGACGACGTCGGTGCTCTTCACGG
GCGAGCTGCTGCGGCAGGCGGAGCGCTACCTGAGCGAGGGGCTGCACCCG
CGGGTGCTGACGGAGGGTTTCGAGCTCGCCAAGGAGCACGCCCTGGAGCT
CCTTGACACCTTCCGGTCCACGAGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig106:47156..47883+

>mRNA_L-elsbetiae_contig106.577.1 ID=mRNA_L-elsbetiae_contig106.577.1|Name=mRNA_L-elsbetiae_contig106.577.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=582bp|location=Sequence derived from alignment at L-elsbetiae_contig106:47156..47883+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCGTGGGCGGGGCGGGGCAGATCAAGCTCACCAAAGACGGGCGGGT
GCTGCTGCACGAGATGCAGATCCAGCACCCCACCGCGATGATGATCGCCA
GAAGTGCCACGGCACAGATGCTCGTGGGCGGGGCGGGGCAGATCAAGCTC
ACCAAAGACGGGCGGGTGCTGCTGCACGAGATGCAGATCCAGCACCCCAC
CGCGATGATGATCGCCAGAAGTGCCACGGCACAGGACGACGTGACTGGGG
ACGGGACGACGACGTCGGTGCTCTTCACGGGCGAGCTGCTGCGGCAGGCG
GAGCGCTACCTGAGCGAGGGGCTGCACCCGCGGGTGCTGACGGAGGGTTT
CGAGCTCGCCAAGGAGCACGCCCTGGAGCTCCTTGACACCTTCCGGTCCA
CGAGGTGAGACGACGTGACTGGGGACGGGACGACGACGTCGGTGCTCTTC
ACGGGCGAGCTGCTGCGGCAGGCGGAGCGCTACCTGAGCGAGGGGCTGCA
CCCGCGGGTGCTGACGGAGGGTTTCGAGCTCGCCAAGGAGCACGCCCTGG
AGCTCCTTGACACCTTCCGGTCCACGAGGTGA
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