mRNA_L-elsbetiae_contig106.574.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig106.574.1
Unique NamemRNA_L-elsbetiae_contig106.574.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig106.574.1 vs. uniprot
Match: D8LKS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS7_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 1.480e-29
Identity = 153/432 (35.42%), Postives = 201/432 (46.53%), Query Frame = 1 
Query:    1 RSTTGADKEYFTYSDGEDGDFAVTPGGKHVTDDSVLLSPHQKANSASPPAPPPDPTSLVVDVVASPPGDLAQGSGGCSCRGSGDDGDASPQQLNQPLH-------ALVGESTHFSSKENDEES---GDDGTARVVDNKTENTEPLVVGDEGERRAAVVDSRSEGDTTRNHARAVSRQDAAKAAAPEV-GKARYGREEE---DRNLVGRGRGRSSAGVLAHAYAGYSSPTRDTSNLLGRVQIRGDNLGRSFTGSVSSSFDASPLKGESISTSVLAAARDSGGAGSSDGVGAGGVDLLAAAKAAVRG--ERNCDYAAAVGEDLSRPFSAWLDEDRRPTHSK----AASG------FSSDVDRQASENCGAHNSSRRRETGLEIGAARGVNARRCSEEEGRDGK--RAASIADWSSLELEEELFRIREAIESRVR 1212
            RSTT A+ + FTYSDGE   FA +   K+  ++S +L P+  A  ASP         +VV V A  P   A+G       G         Q+  +P H       ++ G S+    K+ND+     GDD      D++ +N  P    D G     V  +RS G+ +  H+      D A  + P+  G  +  REE+   +R     GR R +A +L  A    SSPTRD S   GR +  G+ L  S   S SS F+ASPLKGESI    L+A  D   A      G  G D L A  A V    + +   +  VG+D+ +PF AWLDE  R +H      AA G      F  D+DR+A+ +     S   R       AA GV   R    E R  +   AASI DWSS ELEEEL RIR A+ESRVR
Sbjct:    3 RSTTAAETDCFTYSDGEGDGFASSTPAKNAIENSDVLIPNDDA-PASP--------EVVVPVTAVAPRYGAEG-------GVVQTPSYKQQEPRRPSHVVGGIVASVAGTSSIKYGKDNDDGEAVFGDDVATGYEDDEHDNDTPAA-DDVGNLNTMVTHTRSGGNASPGHS-----WDTASVSVPKSQGGGKNSREEDFLGERRSRREGRRRRNADLLVDACTASSSPTRDDSQPFGRERSGGERLWSSLALSTSS-FEASPLKGESIPALALSARSDCSTARRLGDDGGAGDDFLLADGAEVPAISKPSSSISVGVGDDVPKPFLAWLDEGPRYSHPDDDPGAAGGHDRLPLFCPDIDRRATGSADVQKSHHPRAP--RTFAAHGVGVLRGQHHEDRTHEVIGAASIEDWSSRELEEELRRIRGAVESRVR 409
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BLAST of mRNA_L-elsbetiae_contig106.574.1 vs. uniprot
Match: A0A6H5L2R9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2R9_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 3.440e-20
Identity = 142/424 (33.49%), Postives = 184/424 (43.40%), Query Frame = 1 
Query:    1 RSTTGADKEYFTYSDGEDGDFAVTPGGKHVTDDSVLLSPHQKANSASPPAPPPDPTSLVVDVVASPPGDLAQGSGGCSCRGSGDDGDASPQQLNQPLHALVGE---STHFSSKENDEESGDDGTARVVDNKTENTEPLVVGDEGERRAAVVDSRSEGDTTRNHARAVSRQDAAKAAAPEVGKARYGREEEDRNLVGRGRGRSS-----AGVLAHAYAGYSSPTRDTSNLLGRVQIRGDNLGRSFTGSVSSSFDASPLKGESISTSVLAAARDSGGAGS-SDGVGAGGVDLLA-AAKAAVRGERNCDYAAAVGEDLSRPFSAWLDEDRRPTHSK----AASG------FSSDVDRQASENCGAHNSSRRRETGLEIGAARGVNARRCSEEEGRDGKRAASIADWSSLELEEELFRIREAIESRVR 1212
            RST  A+ + FTYSDGE    A      +  ++S +L P+  A  ASP         +VV V A  P   A+G       G         Q+  +P H +VGE   S   +S     +   DG A V D+     E    GDE +      D     +    H+      D A A  PE         E +  L GR   R S     + +L  A+   SSPTR  S   GR Q  GD L  S   S +SSF+ASPLKGE+I     +A  D   A    DG GAG   LLA +A+     +     +  VG+D+ +PF +WLDE  R +       AA G      FS D+DR+A+       S   R      G   GV   +  E+   +   A  I DWSS ELEEEL RIR A+ESRVR
Sbjct:  311 RSTPAAETDCFTYSDGESDSCASPTPATNTIENSDVLMPNDDA-PASP--------EVVVQVTAVAPRYGAEG-------GVVQTPSYKQQESRRPSH-VVGEIIASVAGTSSIKHGKDNFDGEAVVGDDVATGYE----GDECDNDTPAADDMGNKNALPGHS-----WDTASAIVPEFPGGGKDSREGEVFLGGRRSRRESERRRKSDLLVDAWTTSSSPTRHDSQPCGREQSGGDRLWSSLALSTASSFEASPLKGETIPALAHSARSDCSTAHRLGDGDGAGDDFLLADSAEVPAISKPTSSISGGVGDDVPKPFLSWLDEGPRYSRPDDDPGAAEGHDRRPLFSPDIDRRATGRTDVQESHHPRAPRTFAGDGVGVLNGQHHEDRTHEVNGAVRIEDWSSRELEEELRRIRGAVESRVR 708
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig106.574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKS7_ECTSI1.480e-2935.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2R9_9PHAE3.440e-2033.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig106contigL-elsbetiae_contig106:19579..20790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_005380.1
Exons1
Model size1212
Cds size1212
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815281.309515-CDS-L-elsbetiae_contig106:19578..207901622815281.309515-CDS-L-elsbetiae_contig106:19578..20790Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig106 19579..20790 +
1691682814.5680308-CDS-L-elsbetiae_contig106:19578..207901691682814.5680308-CDS-L-elsbetiae_contig106:19578..20790Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig106 19579..20790 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig106.574.1prot_L-elsbetiae_contig106.574.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig106 19579..20790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig106.574.1

>prot_L-elsbetiae_contig106.574.1 ID=prot_L-elsbetiae_contig106.574.1|Name=mRNA_L-elsbetiae_contig106.574.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=404bp
RSTTGADKEYFTYSDGEDGDFAVTPGGKHVTDDSVLLSPHQKANSASPPA
PPPDPTSLVVDVVASPPGDLAQGSGGCSCRGSGDDGDASPQQLNQPLHAL
VGESTHFSSKENDEESGDDGTARVVDNKTENTEPLVVGDEGERRAAVVDS
RSEGDTTRNHARAVSRQDAAKAAAPEVGKARYGREEEDRNLVGRGRGRSS
AGVLAHAYAGYSSPTRDTSNLLGRVQIRGDNLGRSFTGSVSSSFDASPLK
GESISTSVLAAARDSGGAGSSDGVGAGGVDLLAAAKAAVRGERNCDYAAA
VGEDLSRPFSAWLDEDRRPTHSKAASGFSSDVDRQASENCGAHNSSRRRE
TGLEIGAARGVNARRCSEEEGRDGKRAASIADWSSLELEEELFRIREAIE
SRVR
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mRNA from alignment at L-elsbetiae_contig106:19579..20790+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig106.574.1 ID=mRNA_L-elsbetiae_contig106.574.1|Name=mRNA_L-elsbetiae_contig106.574.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1212bp|location=Sequence derived from alignment at L-elsbetiae_contig106:19579..20790+ (Laminarionema elsbetiae ELsaHSoW15)
AGATCTACCACAGGTGCTGATAAAGAATATTTCACTTATAGCGACGGCGA
GGACGGCGACTTCGCTGTGACACCCGGAGGAAAGCACGTCACCGATGATT
CTGTGTTACTCTCGCCCCACCAGAAAGCCAATTCCGCTTCTCCTCCTGCT
CCTCCTCCCGATCCTACGTCTTTGGTGGTAGATGTGGTCGCTTCTCCGCC
GGGCGATCTCGCTCAGGGTAGCGGTGGCTGCAGTTGCCGGGGTTCAGGCG
ATGACGGTGATGCATCACCGCAACAGCTAAACCAGCCTCTGCACGCACTC
GTCGGTGAGAGCACTCATTTCAGCTCGAAGGAAAACGATGAGGAGAGCGG
CGACGATGGGACGGCGAGGGTTGTCGACAACAAGACTGAAAATACCGAAC
CCCTGGTTGTTGGAGATGAAGGCGAAAGGAGAGCCGCCGTTGTGGACAGC
AGGAGTGAGGGAGACACGACCAGGAATCATGCACGAGCCGTTTCGCGGCA
GGATGCAGCAAAGGCAGCCGCCCCAGAAGTAGGAAAAGCAAGATATGGAC
GAGAAGAAGAAGATAGAAATCTAGTCGGGAGAGGACGAGGGAGAAGCAGC
GCTGGTGTTCTTGCTCACGCCTACGCGGGCTACTCGTCCCCAACTCGTGA
CACTTCAAACCTGCTCGGCAGAGTGCAGATCCGCGGTGACAACCTGGGTA
GGAGTTTTACCGGGTCGGTTTCCAGCAGTTTCGACGCATCGCCACTGAAG
GGGGAGTCTATCTCGACTTCAGTGCTCGCCGCCGCAAGGGACAGCGGCGG
TGCGGGGTCTTCTGACGGTGTCGGTGCCGGTGGTGTCGATCTTCTCGCGG
CTGCCAAAGCGGCGGTTCGCGGCGAGAGAAACTGTGATTATGCTGCTGCT
GTTGGCGAAGACCTTTCTCGTCCTTTCTCGGCATGGTTGGACGAGGATCG
GCGACCTACGCACTCGAAAGCAGCATCGGGTTTTTCCTCTGACGTCGATC
GACAAGCGAGTGAGAACTGTGGCGCCCACAATAGTAGCCGCCGCCGAGAG
ACAGGGCTGGAAATTGGCGCTGCTCGAGGTGTAAATGCACGCCGCTGCAG
CGAAGAGGAAGGGCGCGACGGCAAACGAGCTGCGAGTATTGCCGACTGGA
GTTCGCTGGAGCTGGAAGAGGAGCTGTTTCGGATTCGGGAAGCGATAGAA
AGCCGAGTGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig106:19579..20790+

>mRNA_L-elsbetiae_contig106.574.1 ID=mRNA_L-elsbetiae_contig106.574.1|Name=mRNA_L-elsbetiae_contig106.574.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2424bp|location=Sequence derived from alignment at L-elsbetiae_contig106:19579..20790+ (Laminarionema elsbetiae ELsaHSoW15)
AGATCTACCACAGGTGCTGATAAAGAATATTTCACTTATAGCGACGGCGA
GGACGGCGACTTCGCTGTGACACCCGGAGGAAAGCACGTCACCGATGATT
CTGTGTTACTCTCGCCCCACCAGAAAGCCAATTCCGCTTCTCCTCCTGCT
CCTCCTCCCGATCCTACGTCTTTGGTGGTAGATGTGGTCGCTTCTCCGCC
GGGCGATCTCGCTCAGGGTAGCGGTGGCTGCAGTTGCCGGGGTTCAGGCG
ATGACGGTGATGCATCACCGCAACAGCTAAACCAGCCTCTGCACGCACTC
GTCGGTGAGAGCACTCATTTCAGCTCGAAGGAAAACGATGAGGAGAGCGG
CGACGATGGGACGGCGAGGGTTGTCGACAACAAGACTGAAAATACCGAAC
CCCTGGTTGTTGGAGATGAAGGCGAAAGGAGAGCCGCCGTTGTGGACAGC
AGGAGTGAGGGAGACACGACCAGGAATCATGCACGAGCCGTTTCGCGGCA
GGATGCAGCAAAGGCAGCCGCCCCAGAAGTAGGAAAAGCAAGATATGGAC
GAGAAGAAGAAGATAGAAATCTAGTCGGGAGAGGACGAGGGAGAAGCAGC
GCTGGTGTTCTTGCTCACGCCTACGCGGGCTACTCGTCCCCAACTCGTGA
CACTTCAAACCTGCTCGGCAGAGTGCAGATCCGCGGTGACAACCTGGGTA
GGAGTTTTACCGGGTCGGTTTCCAGCAGTTTCGACGCATCGCCACTGAAG
GGGGAGTCTATCTCGACTTCAGTGCTCGCCGCCGCAAGGGACAGCGGCGG
TGCGGGGTCTTCTGACGGTGTCGGTGCCGGTGGTGTCGATCTTCTCGCGG
CTGCCAAAGCGGCGGTTCGCGGCGAGAGAAACTGTGATTATGCTGCTGCT
GTTGGCGAAGACCTTTCTCGTCCTTTCTCGGCATGGTTGGACGAGGATCG
GCGACCTACGCACTCGAAAGCAGCATCGGGTTTTTCCTCTGACGTCGATC
GACAAGCGAGTGAGAACTGTGGCGCCCACAATAGTAGCCGCCGCCGAGAG
ACAGGGCTGGAAATTGGCGCTGCTCGAGGTGTAAATGCACGCCGCTGCAG
CGAAGAGGAAGGGCGCGACGGCAAACGAGCTGCGAGTATTGCCGACTGGA
GTTCGCTGGAGCTGGAAGAGGAGCTGTTTCGGATTCGGGAAGCGATAGAA
AGCCGAGTGCGGAGATCTACCACAGGTGCTGATAAAGAATATTTCACTTA
TAGCGACGGCGAGGACGGCGACTTCGCTGTGACACCCGGAGGAAAGCACG
TCACCGATGATTCTGTGTTACTCTCGCCCCACCAGAAAGCCAATTCCGCT
TCTCCTCCTGCTCCTCCTCCCGATCCTACGTCTTTGGTGGTAGATGTGGT
CGCTTCTCCGCCGGGCGATCTCGCTCAGGGTAGCGGTGGCTGCAGTTGCC
GGGGTTCAGGCGATGACGGTGATGCATCACCGCAACAGCTAAACCAGCCT
CTGCACGCACTCGTCGGTGAGAGCACTCATTTCAGCTCGAAGGAAAACGA
TGAGGAGAGCGGCGACGATGGGACGGCGAGGGTTGTCGACAACAAGACTG
AAAATACCGAACCCCTGGTTGTTGGAGATGAAGGCGAAAGGAGAGCCGCC
GTTGTGGACAGCAGGAGTGAGGGAGACACGACCAGGAATCATGCACGAGC
CGTTTCGCGGCAGGATGCAGCAAAGGCAGCCGCCCCAGAAGTAGGAAAAG
CAAGATATGGACGAGAAGAAGAAGATAGAAATCTAGTCGGGAGAGGACGA
GGGAGAAGCAGCGCTGGTGTTCTTGCTCACGCCTACGCGGGCTACTCGTC
CCCAACTCGTGACACTTCAAACCTGCTCGGCAGAGTGCAGATCCGCGGTG
ACAACCTGGGTAGGAGTTTTACCGGGTCGGTTTCCAGCAGTTTCGACGCA
TCGCCACTGAAGGGGGAGTCTATCTCGACTTCAGTGCTCGCCGCCGCAAG
GGACAGCGGCGGTGCGGGGTCTTCTGACGGTGTCGGTGCCGGTGGTGTCG
ATCTTCTCGCGGCTGCCAAAGCGGCGGTTCGCGGCGAGAGAAACTGTGAT
TATGCTGCTGCTGTTGGCGAAGACCTTTCTCGTCCTTTCTCGGCATGGTT
GGACGAGGATCGGCGACCTACGCACTCGAAAGCAGCATCGGGTTTTTCCT
CTGACGTCGATCGACAAGCGAGTGAGAACTGTGGCGCCCACAATAGTAGC
CGCCGCCGAGAGACAGGGCTGGAAATTGGCGCTGCTCGAGGTGTAAATGC
ACGCCGCTGCAGCGAAGAGGAAGGGCGCGACGGCAAACGAGCTGCGAGTA
TTGCCGACTGGAGTTCGCTGGAGCTGGAAGAGGAGCTGTTTCGGATTCGG
GAAGCGATAGAAAGCCGAGTGCGG
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