mRNA_L-elsbetiae_contig106.573.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig106.573.1
Unique NamemRNA_L-elsbetiae_contig106.573.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig106.573.1 vs. uniprot
Match: A0A6H5L2R9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2R9_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 3.050e-20
Identity = 50/84 (59.52%), Postives = 61/84 (72.62%), Query Frame = 2 
Query:   53 SVSTSRCTYRKQARAAICIQAAYRGERTRNRVVQPALAAFSDVCDKISAECP-GLTAESLCGPVHLPRWLSTDHCATAPSAGTC 301
            S+S  RCT R++ RAA+ +QA YRGER RNRVVQPAL AF DVC++ISAE P GLT   +CGPV LPRW S  H  ++  +G C
Sbjct:   18 SLSEPRCTLRRRTRAAVRVQAIYRGERARNRVVQPALDAFRDVCERISAEGPSGLTTACICGPVKLPRWFSDGHSDSSRCSGVC 101
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig106.573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L2R9_9PHAE3.050e-2059.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig106contigL-elsbetiae_contig106:16471..19176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size579
Cds size567
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig106.573.1prot_L-elsbetiae_contig106.573.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig106 16481..19176 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815281.1133356-UTR-L-elsbetiae_contig106:16470..164801622815281.1133356-UTR-L-elsbetiae_contig106:16470..16480Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig106 16471..16480 +
1691682814.4757917-UTR-L-elsbetiae_contig106:16470..164801691682814.4757917-UTR-L-elsbetiae_contig106:16470..16480Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig106 16471..16480 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815281.1243043-CDS-L-elsbetiae_contig106:16480..165821622815281.1243043-CDS-L-elsbetiae_contig106:16480..16582Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig106 16481..16582 +
1691682814.484496-CDS-L-elsbetiae_contig106:16480..165821691682814.484496-CDS-L-elsbetiae_contig106:16480..16582Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig106 16481..16582 +
1622815281.136668-CDS-L-elsbetiae_contig106:18711..191761622815281.136668-CDS-L-elsbetiae_contig106:18711..19176Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig106 18712..19176 +
1691682814.4927747-CDS-L-elsbetiae_contig106:18711..191761691682814.4927747-CDS-L-elsbetiae_contig106:18711..19176Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig106 18712..19176 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig106.573.1

>prot_L-elsbetiae_contig106.573.1 ID=prot_L-elsbetiae_contig106.573.1|Name=mRNA_L-elsbetiae_contig106.573.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=189bp
METFRRKGKDAYRPSVSTSRCTYRKQARAAICIQAAYRGERTRNRVVQPA
LAAFSDVCDKISAECPGLTAESLCGPVHLPRWLSTDHCATAPSAGTCVAG
ACGIGSAGNTRRANAGAAAAVSSTLLGDTVPRGEVAAKGSDESEELKRPP
PHPATPQLSSMIPSGCTLTPPTVVSAKEPGTVEAVGQDG
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mRNA from alignment at L-elsbetiae_contig106:16471..19176+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig106.573.1 ID=mRNA_L-elsbetiae_contig106.573.1|Name=mRNA_L-elsbetiae_contig106.573.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2706bp|location=Sequence derived from alignment at L-elsbetiae_contig106:16471..19176+ (Laminarionema elsbetiae ELsaHSoW15)
GGCTAGGCCGATGGAGACCTTTCGCCGTAAAGGAAAAGATGCGTACAGGC
CATCCGTGTCGACGTCCCGTTGCACCTATCGTAAACAAGCTCGAGCCGCC
ATATGCATCCAGGTGCGTAGACTATCGTGTACAGCGATTTGAATTTTAAA
TGCCGCAGCTCTCCCCCCTCTTCAGAACATCCAATGCATCCGGCGGTTAA
ATATAAATCAGCGAATCAAAAATGGAACCTAGCCCACATGAGAGCCAAGA
CTCTATGGGTTTCAGACGGTATTCCATTAAGTGACGTAATATTGATTCAG
TAGAGTAGAAAAACACCTAAAATATCCGAAGAATTCAGTATCTCCCCTGC
AAAACTCAGCCAGGTCAACCGACATGTGTACCGGGCAGAAACCCTCCGTG
ATATCGTGATATTGTCATCTACTTCAAAGATAGGAAAACGTCGCATTGCG
GAAATGCTGGTTTTAGCGTATTCTGTGCATGTGGTACTGCTGTAAAGCGG
TTGTACAGTAGAAGTTTCTGTAAGATAAGTGGTTCTTCAAGCGCGTCTTG
CGCGTTGTGCGGACTATCTATATCTATCCATTGTGTGTTATCCGTGGACT
TCCATGCCACAAAACTCTACAGTAAGCCTGTTTCCTCGGTTGCCAGAGGT
TGACCATATTCGTATTCGTGAGACAGAGAGAGAGAGAAACCAGGTATGCA
TCCACCGGCTCGGTAGCTAGTCCAGGTCCGTACAATAGGGGGTTTCCAAG
ATCTTGTTTGTATGAATATGCATGCATCAGCTTTGTATGAGAGTCTAGCA
AAATCCGACCTGAATGATAAATAGCGAGCCCACAACAGTTATTTTCTCCG
GCCGAGTCCGAGTGATGCTGTCCAACAGGTAGGAGCTAGTAGTAGTAGCC
GATGTCCAGCCGTGTCCAACCAAGTGCTTTGCTCAGTGTGCTCATTCTTT
ATTTCATAACTCATCATAAATCGTCAGACCTCGATGCGACACGCCGCAAG
GGACATACAAACAAACTGGAACACAATACAAGGTACGATAAAGGACGTCT
TCATGAAGCCGCCCGTAACACGTGCACCGGCGCAGGAACACGTTTTGTAT
CCCATATTGCAAGTTTCATGTGTGTAGGTAGGTCTACTGTTGTACATCGA
TAGTCTAGGTCTGTACACCCGTACGAAGCTCGCCCCAACCCAAGGCTCGC
CGCAGCTTTGGCCCGATTCAAAAGGCGTTCATGTGCTAGATCTCAGTGAC
TTGTTATTTGCCAATGAACGGTAAGTAGCCCCGACCTGCCAGCAGCCCGG
CTGCTACGTAAATTACGTATGGTCCGTGCACAGCAATTCGACCAATAATT
TCTCAGCACCCGGGTACAATTTTCTCTGCACACAGGTGGTTGTTCCGAAA
TCCGAAAACAGTGGCAAACGCCCTATCTCCAGGCGCAGCTCGTCACGGAG
ATTTTTTTTTTTTTCCTGAACTTTTTATCGGGTAAAAACCGGAAAAACTT
GAAAACTTTCCCGCGGGCGGTGTGTCTCGTCGATTTAAAAAACTCAACGG
ATCTGGACAGATCTCGGAATTTCCGAGAGGGTTTTTTTTTTTTTAAATAC
TTTGAATTGTGGAAGATATCGTCCAAAAAACGGACACAGAAGGCCAACTT
GAAAGCTTGCTAATGTGAGAACCATCCTACCGATTTCAAAATAGAGTGCG
GCAAACGATTCGCCTCATCAATACCCCGAGGGAATTTTATTTTTTTACGG
GAAAGCTCTGGTTGTCGAGAAAACCCACATTTTGTTTTGCAGTCATTCTT
CAGTATAGTCTGGCAGCAGTTTTCGACGGGGCTCCGTGATATTGGAGGGG
GTTCCGTGGCATGTGAAAGGGGTTCCGTGAGGCGAAAATCGGCCAAAAAT
GTTGCATTTCGCCACAAAAAAAACTCTGTAGCTATCGACGCATCTCGACG
AGGCGGTCTCGAATATCGTTGTTTCGCGTTCTAAATATTTATCTAACAAA
AGTTATCGCACATAACGCGATTGGCCGAATTGTTGTGAACGGACCATACA
ATGTATCCACCTTATAACTTGCACTCTAGAGTTTTCTGTTCCGAGTGCAA
GCATCTGTGTTGGACATTTTTTCAACTGCTGCCAGTATGCTGAAGCCCGC
AACCGGGTTGCAACGGCTGTGGCCTATCCTTTATACCATGCCCCCCTTCC
CATCCCCGTGACGCAACACACGATCCCACACCGTGCCGCAGGCAGCCTAT
CGCGGCGAGAGAACCAGAAACCGCGTGGTGCAACCCGCCCTCGCTGCGTT
CAGCGATGTGTGCGACAAAATCTCTGCCGAGTGCCCCGGCTTGACGGCAG
AGAGCTTGTGTGGTCCCGTTCACCTCCCACGTTGGCTCAGCACCGACCAC
TGCGCCACCGCTCCTTCTGCTGGTACTTGTGTTGCTGGTGCTTGTGGTAT
TGGAAGTGCTGGTAATACGAGGAGAGCTAACGCTGGTGCTGCTGCTGCTG
TGTCTTCAACGCTCCTGGGCGACACGGTCCCACGTGGTGAGGTGGCTGCT
AAAGGCTCGGACGAGAGTGAGGAGCTGAAACGGCCACCTCCTCACCCAGC
AACGCCGCAACTTTCCTCGATGATCCCAAGCGGTTGCACACTGACGCCTC
CAACCGTTGTTTCTGCAAAAGAGCCAGGCACAGTCGAGGCGGTGGGACAG
GACGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig106:16471..19176+

>mRNA_L-elsbetiae_contig106.573.1 ID=mRNA_L-elsbetiae_contig106.573.1|Name=mRNA_L-elsbetiae_contig106.573.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1134bp|location=Sequence derived from alignment at L-elsbetiae_contig106:16471..19176+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGACCTTTCGCCGTAAAGGAAAAGATGCGTACAGGCCATCCGTGTC
GACGTCCCGTTGCACCTATCGTAAACAAGCTCGAGCCGCCATATGCATCC
AGATGGAGACCTTTCGCCGTAAAGGAAAAGATGCGTACAGGCCATCCGTG
TCGACGTCCCGTTGCACCTATCGTAAACAAGCTCGAGCCGCCATATGCAT
CCAGGCAGCCTATCGCGGCGAGAGAACCAGAAACCGCGTGGTGCAACCCG
CCCTCGCTGCGTTCAGCGATGTGTGCGACAAAATCTCTGCCGAGTGCCCC
GGCTTGACGGCAGAGAGCTTGTGTGGTCCCGTTCACCTCCCACGTTGGCT
CAGCACCGACCACTGCGCCACCGCTCCTTCTGCTGGTACTTGTGTTGCTG
GTGCTTGTGGTATTGGAAGTGCTGGTAATACGAGGAGAGCTAACGCTGGT
GCTGCTGCTGCTGTGTCTTCAACGCTCCTGGGCGACACGGTCCCACGTGG
TGAGGTGGCTGCTAAAGGCTCGGACGAGAGTGAGGAGCTGAAACGGCCAC
CTCCTCACCCAGCAACGCCGCAACTTTCCTCGATGATCCCAAGCGGTTGC
ACACTGACGCCTCCAACCGTTGTTTCTGCAAAAGAGCCAGGCACAGTCGA
GGCGGTGGGACAGGACGGCGCAGCCTATCGCGGCGAGAGAACCAGAAACC
GCGTGGTGCAACCCGCCCTCGCTGCGTTCAGCGATGTGTGCGACAAAATC
TCTGCCGAGTGCCCCGGCTTGACGGCAGAGAGCTTGTGTGGTCCCGTTCA
CCTCCCACGTTGGCTCAGCACCGACCACTGCGCCACCGCTCCTTCTGCTG
GTACTTGTGTTGCTGGTGCTTGTGGTATTGGAAGTGCTGGTAATACGAGG
AGAGCTAACGCTGGTGCTGCTGCTGCTGTGTCTTCAACGCTCCTGGGCGA
CACGGTCCCACGTGGTGAGGTGGCTGCTAAAGGCTCGGACGAGAGTGAGG
AGCTGAAACGGCCACCTCCTCACCCAGCAACGCCGCAACTTTCCTCGATG
ATCCCAAGCGGTTGCACACTGACGCCTCCAACCGTTGTTTCTGCAAAAGA
GCCAGGCACAGTCGAGGCGGTGGGACAGGACGGC
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