mRNA_L-elsbetiae_contig10590.565.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10590.565.1
Unique NamemRNA_L-elsbetiae_contig10590.565.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig10590.565.1 vs. uniprot
Match: A0A6H5JZ18_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ18_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 9.030e-38
Identity = 67/74 (90.54%), Postives = 74/74 (100.00%), Query Frame = 1
Query:    1 LNKARDIREQLEGLCERVEVDISTNPTEMEGIAKAITAGFFYNTSKMSKSGDYKTIKNQHTVYIHPSSVLHKQE 222
            LN+ARDIREQLEGLCERVEV+IS+NPTEMEGIAK++T+GFFYNT+KMSKSGDYKTIKNQHTVYIHPSSVLHKQE
Sbjct:  568 LNRARDIREQLEGLCERVEVEISSNPTEMEGIAKSVTSGFFYNTAKMSKSGDYKTIKNQHTVYIHPSSVLHKQE 641          
BLAST of mRNA_L-elsbetiae_contig10590.565.1 vs. uniprot
Match: D8LHZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHZ7_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 9.590e-38
Identity = 68/74 (91.89%), Postives = 74/74 (100.00%), Query Frame = 1
Query:    1 LNKARDIREQLEGLCERVEVDISTNPTEMEGIAKAITAGFFYNTSKMSKSGDYKTIKNQHTVYIHPSSVLHKQE 222
            LN+ARDIREQLEGLCERVEV+IS+NPTEMEGIAKA+T+GFFYNT+KMSKSGDYKTIKNQHTVYIHPSSVLHKQE
Sbjct:  988 LNRARDIREQLEGLCERVEVEISSNPTEMEGIAKAMTSGFFYNTAKMSKSGDYKTIKNQHTVYIHPSSVLHKQE 1061          
BLAST of mRNA_L-elsbetiae_contig10590.565.1 vs. uniprot
Match: A0A835YTF2_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTF2_9STRA)

HSP 1 Score: 115 bits (288), Expect = 2.700e-28
Identity = 51/72 (70.83%), Postives = 69/72 (95.83%), Query Frame = 1
Query:    1 LNKARDIREQLEGLCERVEVDISTNPTEMEGIAKAITAGFFYNTSKMSKSGDYKTIKNQHTVYIHPSSVLHK 216
            LN+ARDIREQLEGLCERVE+++++NP +++ IAKAIT+G+FY+T+K+S+SGDY+T+K+QHTVYIHPSSVL K
Sbjct:  960 LNRARDIREQLEGLCERVEIEMTSNPGDIDAIAKAITSGYFYHTAKLSRSGDYRTVKHQHTVYIHPSSVLAK 1031          
BLAST of mRNA_L-elsbetiae_contig10590.565.1 vs. uniprot
Match: K0R9P7_THAOC (OB_NTP_bind domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R9P7_THAOC)

HSP 1 Score: 106 bits (265), Expect = 4.740e-28
Identity = 51/75 (68.00%), Postives = 65/75 (86.67%), Query Frame = 1
Query:    1 LNKARDIREQLEGLCERVEVDIS-TNPTEMEGIAKAITAGFFYNTSKMSKSGDYKTIKNQHTVYIHPSSVLHKQE 222
            + KARD+REQLEGLCERVEVD + ++P ++E I KAITAGFFYNT+++ KSGDY+T+K + TVYIHPSSVL K+E
Sbjct:    1 MKKARDVREQLEGLCERVEVDPTVSSPEDIESILKAITAGFFYNTARLGKSGDYETVKQRRTVYIHPSSVLAKEE 75          
BLAST of mRNA_L-elsbetiae_contig10590.565.1 vs. uniprot
Match: A0A6U0WST0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0WST0_9STRA)

HSP 1 Score: 112 bits (281), Expect = 2.380e-27
Identity = 49/74 (66.22%), Postives = 65/74 (87.84%), Query Frame = 1
Query:    1 LNKARDIREQLEGLCERVEVDISTNPTEMEGIAKAITAGFFYNTSKMSKSGDYKTIKNQHTVYIHPSSVLHKQE 222
            +N+ARD+ EQLEGLCERVE+++++NP ++E I KA+ AGFFYNTSK+SKSG+YKT+K QHTVYIHPSS + + E
Sbjct:  853 MNRARDVYEQLEGLCERVEIEMTSNPNDVENICKAVAAGFFYNTSKLSKSGEYKTVKQQHTVYIHPSSCMARLE 926          
BLAST of mRNA_L-elsbetiae_contig10590.565.1 vs. uniprot
Match: A0A7S1CH39_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CH39_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.420e-26
Identity = 47/74 (63.51%), Postives = 62/74 (83.78%), Query Frame = 1
Query:    1 LNKARDIREQLEGLCERVEVDISTNPTEMEGIAKAITAGFFYNTSKMSKSGDYKTIKNQHTVYIHPSSVLHKQE 222
            + +ARDIREQLEGLCERVE+  S++P + + +AKA+TAGFFYNT+K+ K+G YKT+KN HTV +HPSS L K+E
Sbjct:   33 MRRARDIREQLEGLCERVEIPPSSSPHDHDVVAKALTAGFFYNTAKLQKNGTYKTVKNAHTVAVHPSSALFKEE 106          
BLAST of mRNA_L-elsbetiae_contig10590.565.1 vs. uniprot
Match: A0A6T5W0Z3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A6T5W0Z3_9STRA)

HSP 1 Score: 104 bits (259), Expect = 6.940e-26
Identity = 47/74 (63.51%), Postives = 62/74 (83.78%), Query Frame = 1
Query:    1 LNKARDIREQLEGLCERVEVDISTNPTEMEGIAKAITAGFFYNTSKMSKSGDYKTIKNQHTVYIHPSSVLHKQE 222
            +NKARDIREQLEGLCERVE+D+ +   +++ I K +T+G+FY+T+K++   DYKTIKNQHTVYIHPSSVL K +
Sbjct:  135 MNKARDIREQLEGLCERVEIDLVSKSPDIDMICKGLTSGYFYHTAKLTAGNDYKTIKNQHTVYIHPSSVLIKDD 208          
BLAST of mRNA_L-elsbetiae_contig10590.565.1 vs. uniprot
Match: A0A7S0PHI1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0PHI1_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.200e-25
Identity = 51/75 (68.00%), Postives = 62/75 (82.67%), Query Frame = 1
Query:    1 LNKARDIREQLEGLCERVEVD-ISTNPTEMEGIAKAITAGFFYNTSKMSKSGDYKTIKNQHTVYIHPSSVLHKQE 222
            + KARDIR+QLEGLCERVEVD + ++P + + I K +TAGFFYNT+KM KSGDY TIK + TVYIHPSSVL K+E
Sbjct:  250 MRKARDIRDQLEGLCERVEVDHVVSSPDDQDSILKCVTAGFFYNTAKMGKSGDYTTIKQKKTVYIHPSSVLSKEE 324          
BLAST of mRNA_L-elsbetiae_contig10590.565.1 vs. uniprot
Match: A0A7S0PU62_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PU62_9STRA)

HSP 1 Score: 103 bits (256), Expect = 3.720e-25
Identity = 48/75 (64.00%), Postives = 63/75 (84.00%), Query Frame = 1
Query:    1 LNKARDIREQLEGLCERVEVD-ISTNPTEMEGIAKAITAGFFYNTSKMSKSGDYKTIKNQHTVYIHPSSVLHKQE 222
            + KARDIREQLEGLCERVE+D  ++ P + + + K+ITAGFFYNT+K+ +SGDY+T+K + TVYIHPSSVL K+E
Sbjct:  150 IKKARDIREQLEGLCERVEIDQTASKPDDTDAVLKSITAGFFYNTAKLGRSGDYQTVKQRKTVYIHPSSVLAKEE 224          
BLAST of mRNA_L-elsbetiae_contig10590.565.1 vs. uniprot
Match: A0A7S0PIS7_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0PIS7_9STRA)

HSP 1 Score: 105 bits (262), Expect = 7.340e-25
Identity = 51/75 (68.00%), Postives = 62/75 (82.67%), Query Frame = 1
Query:    1 LNKARDIREQLEGLCERVEVD-ISTNPTEMEGIAKAITAGFFYNTSKMSKSGDYKTIKNQHTVYIHPSSVLHKQE 222
            + KARDIR+QLEGLCERVEVD + ++P + + I K +TAGFFYNT+KM KSGDY TIK + TVYIHPSSVL K+E
Sbjct:  425 MRKARDIRDQLEGLCERVEVDHVVSSPDDQDSILKCVTAGFFYNTAKMGKSGDYTTIKQKKTVYIHPSSVLSKEE 499          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10590.565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZ18_9PHAE9.030e-3890.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHZ7_ECTSI9.590e-3891.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YTF2_9STRA2.700e-2870.83P-loop containing nucleoside triphosphate hydrolas... [more]
K0R9P7_THAOC4.740e-2868.00OB_NTP_bind domain-containing protein n=1 Tax=Thal... [more]
A0A6U0WST0_9STRA2.380e-2766.22Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1CH39_9STRA1.420e-2663.51Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A6T5W0Z3_9STRA6.940e-2663.51Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A7S0PHI1_9STRA2.200e-2568.00Hypothetical protein n=1 Tax=Leptocylindrus aporus... [more]
A0A7S0PU62_9STRA3.720e-2564.00Hypothetical protein n=1 Tax=Asterionellopsis glac... [more]
A0A7S0PIS7_9STRA7.340e-2568.00Hypothetical protein n=1 Tax=Leptocylindrus aporus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10590contigL-elsbetiae_contig10590:4923..5607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.5
Seed ortholog evalue7.8e-32
Seed eggNOG ortholog2880.D8LHZ7
Preferred namecdc28
KEGG koko:K12813,ko:K12814
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
GOsGO:0000349,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016074,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0032991,GO:0034247,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042623,GO:0043144,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070035,GO:0071006,GO:0071012,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.ATP-dependent RNA helicase activity
EggNOG OGsCOG1643@1,KOG0923@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041
Exons2
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815280.732635-CDS-L-elsbetiae_contig10590:4922..50241622815280.732635-CDS-L-elsbetiae_contig10590:4922..5024Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10590 4923..5024 +
1691682814.2928119-CDS-L-elsbetiae_contig10590:4922..50241691682814.2928119-CDS-L-elsbetiae_contig10590:4922..5024Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10590 4923..5024 +
1622815280.7430263-CDS-L-elsbetiae_contig10590:5487..56071622815280.7430263-CDS-L-elsbetiae_contig10590:5487..5607Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10590 5488..5607 +
1691682814.3037698-CDS-L-elsbetiae_contig10590:5487..56071691682814.3037698-CDS-L-elsbetiae_contig10590:5487..5607Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10590 5488..5607 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10590.565.1prot_L-elsbetiae_contig10590.565.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10590 4923..5607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10590.565.1

>prot_L-elsbetiae_contig10590.565.1 ID=prot_L-elsbetiae_contig10590.565.1|Name=mRNA_L-elsbetiae_contig10590.565.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=74bp
LNKARDIREQLEGLCERVEVDISTNPTEMEGIAKAITAGFFYNTSKMSKS
GDYKTIKNQHTVYIHPSSVLHKQE
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mRNA from alignment at L-elsbetiae_contig10590:4923..5607+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10590.565.1 ID=mRNA_L-elsbetiae_contig10590.565.1|Name=mRNA_L-elsbetiae_contig10590.565.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=685bp|location=Sequence derived from alignment at L-elsbetiae_contig10590:4923..5607+ (Laminarionema elsbetiae ELsaHSoW15)
CTGAACAAAGCCCGCGACATCCGGGAGCAGCTGGAGGGGCTCTGCGAGAG GGTGGAGGTGGATATCTCGACCAATCCAACCGAAATGGAGGGTATCGCCA AGGTATGTGCATAGGTGTCTCCACCCGGATATCGCTGCAGCCGGCCGGCC GTCACGTAGAGCAAGCATGATGTGGGGGTGAGGTTTTTTTTTTAAGAGTT GCGGTAGTGATGTCACAGGAGATAGAATAGCACGGTTGCAGAGAGTTGGA GTATCAGTGACAGGGTTGCACAGCTCGAAATGTTGAATATATTGTTGTTT CGTTGTTTCAGAATTGGCTTGTCCACAGCATCCCCAGCGTGCCCCCGGCT CCACCGTCTCGGTCTAACTCGAATCAACCTTTGTGTTCTCTGCCGGCACA AGTGACGTCACGCGAGTTGTCCAAACGCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCGGCCGTCGACCAAACGCCGCCCCCCCCCCCCCCCCGGCGTGCTCA CTTTTCATTTCATAGGCAATAACGGCCGGGTTCTTCTACAACACGTCCAA GATGTCCAAGTCGGGGGACTACAAGACCATCAAGAATCAGCACACGGTGT ACATCCACCCCAGCAGCGTGCTCCATAAGCAGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10590:4923..5607+

>mRNA_L-elsbetiae_contig10590.565.1 ID=mRNA_L-elsbetiae_contig10590.565.1|Name=mRNA_L-elsbetiae_contig10590.565.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=444bp|location=Sequence derived from alignment at L-elsbetiae_contig10590:4923..5607+ (Laminarionema elsbetiae ELsaHSoW15)
CTGAACAAAGCCCGCGACATCCGGGAGCAGCTGGAGGGGCTCTGCGAGAG
GGTGGAGGTGGATATCTCGACCAATCCAACCGAAATGGAGGGTATCGCCA
AGCTGAACAAAGCCCGCGACATCCGGGAGCAGCTGGAGGGGCTCTGCGAG
AGGGTGGAGGTGGATATCTCGACCAATCCAACCGAAATGGAGGGTATCGC
CAAGGCAATAACGGCCGGGTTCTTCTACAACACGTCCAAGATGTCCAAGT
CGGGGGACTACAAGACCATCAAGAATCAGCACACGGTGTACATCCACCCC
AGCAGCGTGCTCCATAAGCAGGAGGCAATAACGGCCGGGTTCTTCTACAA
CACGTCCAAGATGTCCAAGTCGGGGGACTACAAGACCATCAAGAATCAGC
ACACGGTGTACATCCACCCCAGCAGCGTGCTCCATAAGCAGGAG
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