mRNA_L-elsbetiae_contig10569.551.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig10569.551.1 vs. uniprot
Match: D8LJE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE4_ECTSI) HSP 1 Score: 387 bits (993), Expect = 1.130e-124 Identity = 196/375 (52.27%), Postives = 247/375 (65.87%), Query Frame = 3 Query: 927 GSSFLALRFLSAGMRALGEPEIECARCDTWFGMLARTELGTNVQNVHVQVRGEPKSGTGFMYEWAVNSLMVTCSRLELLYGRDTCRVSWTD-----RQGEVFPTIHKEASIRDMLRVQMEFEPGKQRN----GSLGAAACQCEGVDKVSVAISSLHKHSFPVSEDCPWQHVDRLAPQGQVCRKVAGHPMQNHTDTAQCLRDNPCEFEDSSLQMLVLRDPRAVAVSSFFYVKTYMANSGRLVPNESVGSFAVRMLPTICRFIHLRWLLLEEQMADKTVEFIYDDSLADPFGWHQRWLSSVGITPPKSVVQEATDAAVREEYGFTGKGIDKHPGGKEAKPIRRWQNEVR--VAKQLTDICRVWLPPVLLEKFGIDVP 2018 G ++ +L S G+R L E C C+T FG L + Q+V +Q+RGEPKSGT FM+EWAVN+LMVTC L LYG TC W +Q V P E ++ DM V F+P +Q G A+ C C VDKVS+ +SSL KH PV CPWQHVD + P+ + C V G + N+TDT +CL+ +PC D +QML+LRDPRAVAVSSFF++KT+ + + +ESV SF +RMLPTIC FIHLR+L+L E++ KTVEF YD+SLADP WHQRWLSSVG+TPP VV +AT+ ++R EYGF GKG+DKHPGGKEA R W++E+ VA+QL ICR WLPPVLLEKFGI P Sbjct: 62 GGAWSSLETGSTGLRKLQADE--CPPCETMFGKLNGAQ-----QHVELQLRGEPKSGTSFMFEWAVNALMVTCEELGRLYGEGTCTFRWRGFFSRRKQKPVSP----ETALVDMKEVFFVFKPNRQHGRSSAGGPSASPCPCSTVDKVSIMVSSLFKHDLPVPPSCPWQHVDNVTPENKGCTTVNGRRVGNYTDTVECLQQHPCRIVDDRIQMLILRDPRAVAVSSFFHLKTHHHPFWKHLTDESVDSFVLRMLPTICHFIHLRYLVLHEKLGGKTVEFTYDESLADPLQWHQRWLSSVGLTPPPGVVLQATNTSLRREYGFAGKGVDKHPGGKEATEKRTWEDEISHDVAEQLEGICREWLPPVLLEKFGIGAP 425
BLAST of mRNA_L-elsbetiae_contig10569.551.1 vs. uniprot
Match: A0A6H5JP89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP89_9PHAE) HSP 1 Score: 206 bits (523), Expect = 4.550e-59 Identity = 96/151 (63.58%), Postives = 118/151 (78.15%), Query Frame = 3 Query: 1572 SSFFYVKTYMANSGRLVPNESVGSFAVRMLPTICRFIHLRWLLLEEQMADKTVEFIYDDSLADPFGWHQRWLSSVGITPPKSVVQEATDAAVREEYGFTGKGIDKHPGGKEAKPIRRWQNEV--RVAKQLTDICRVWLPPVLLEKFGIDVP 2018 SSFF++KT+ + +ESV SF +RMLPTIC FIHLR+L+L E++ KTVEF YD+SLADP WHQRWLSSVG+TPP +VV +AT+ ++R EYGF GKG+DKHPGGKEA R W++E+ VA+QL DICR WLPPVLLEKFGI P Sbjct: 8 SSFFHLKTHHTPLWKYWHDESVDSFVLRMLPTICHFIHLRYLVLHEKLGGKTVEFTYDESLADPLQWHQRWLSSVGLTPPPAVVLQATNTSLRREYGFVGKGVDKHPGGKEATEKRTWEDEISREVAEQLEDICREWLPPVLLEKFGIGAP 158
BLAST of mRNA_L-elsbetiae_contig10569.551.1 vs. uniprot
Match: A0A6H5KDV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV7_9PHAE) HSP 1 Score: 160 bits (404), Expect = 2.630e-41 Identity = 83/226 (36.73%), Postives = 123/226 (54.42%), Query Frame = 3 Query: 1338 KVSVAISSLHKHSFPVSEDCPWQHVDRLAPQGQVCRKVAGHPMQNHTDTAQCLRDNPCEFEDSSLQMLVLRDPRAVAVSSFFYVKTYMANSGRLVPNESVGSFAVRMLPTICRFIHLRWLLLEEQMADKTVEFIYDDSLADPFGWHQRWLSSVGITPPKSVVQEATDAAVREEYGFTGKGIDKHPGGKEAKPIRRWQNEVR--VAKQLTDICRVWLPPVLLEKFGI 2009 +V ++IS++ KH PV+E CPW H +G C GHP++ D C++ PCE D+ LQ + +RDPRAVAVS++F+ N +L P S+ + +LP +C F LR +L ++++T F Y+ ++ DPF WH RW S G+ P + D V E K ++ HPGG E R WQ+EV + ++ I R WLP VLL ++GI Sbjct: 4 RVEISISTVDKHRLPVNESCPWSHGSGTVHEGDGCWSFDGHPVETGADLWACMQKTPCEITDNRLQFVPIRDPRAVAVSTYFHRVHKDNNYQKLHP--SLDQTVLEILPVLCHFTTLRHILFGGLLSNRTELFWYEQTVEDPFDWHYRWASFAGLILPGGWI----DGMVAENQAH--KHLNPHPGGAETSDNRTWQDEVSPGIRPEMDSILRKWLPGVLLARYGI 221
BLAST of mRNA_L-elsbetiae_contig10569.551.1 vs. uniprot
Match: A0A6H5JG38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG38_9PHAE) HSP 1 Score: 129 bits (324), Expect = 1.020e-30 Identity = 69/168 (41.07%), Postives = 103/168 (61.31%), Query Frame = 3 Query: 1521 DSSLQMLVLRDPRAVAVSSFFYVKTYMA-NSGRLVPNESVGSFAVRMLPTICRFIHLRWLLLEEQMADKTVEFIYDDSLADPFGWHQRWLSSVGITPPKSVVQEATDAAVREEYGFTGKGIDKHPGGKEAKPIRRWQNEVRVA--KQLTDICRVWLPPVLLEKFGIDV 2015 D SLQ VLRDPRAVAVS++FYVK++ A S + +S+ + +LP +C+F +R LL + Q++DK+ F Y+D++ DP GWH RW S G P S +++ DA + E + D HPGG++ R W++E+ A +++ I R WLP VLLE+ GI + Sbjct: 27 DDSLQFAVLRDPRAVAVSTYFYVKSHPAFYSDHVSRGKSLDEAVLLILPQLCQFTTIRHLLFDGQLSDKSEIFWYEDAMRDPLGWHYRWASFAGFALPASWIKDI-DATLPEAQQKVKR--DPHPGGQQVSSKRTWEDEISPAIREEMDSILRTWLPGVLLERLGIPL 191
BLAST of mRNA_L-elsbetiae_contig10569.551.1 vs. uniprot
Match: D7G2T4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T4_ECTSI) HSP 1 Score: 111 bits (278), Expect = 7.200e-25 Identity = 63/169 (37.28%), Postives = 93/169 (55.03%), Query Frame = 3 Query: 1545 LRDPRAVAVSSFFYVKTYMANSGRLVPNESVGSFAVRMLPTICRFIHLRWLLLEEQMADKTVEFIYDDSLADPFGWHQRWLSSVGITPP----KSVVQEATDAAVREEYGFTGKGIDKHPGGKEAKPIRRWQNEV--RVAKQLTDICRVWLPPVLLEKFGIDVPA*EVS 2033 +RDPRAVAVS++FY+K + +S+ V +LP IC+F +R +L + Q++D++ F Y+D++ DP GW+ RW S G T P K + T+AA + + HPGG+ R W++EV ++ I R WLP VLL +F DVPA E S Sbjct: 1 MRDPRAVAVSTYFYIKRSPIHLHHPSRGKSLDEAVVVILPQICQFTTIRHILFDGQLSDRSEIFWYEDAMRDPLGWYNRWASLAGFTLPARWIKDIQASLTEAAENDRKR------EPHPGGQVVSSDRTWEDEVSPETRLEMNSILRTWLPGVLLARF--DVPASETS 161
BLAST of mRNA_L-elsbetiae_contig10569.551.1 vs. uniprot
Match: A0A6H5KPP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPP2_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 6.660e-15 Identity = 56/140 (40.00%), Postives = 69/140 (49.29%), Query Frame = 3 Query: 957 SAGMRALGEPEIECARCDTWFGMLARTELGTNVQNVHVQVRG-------EPKSGTGFMYEWAVNSLMVTCSRLELLYGRDTCRVSWTDRQGEVFPT-IHKEASIRDMLRVQMEFEPGKQRN----GSLGAAACQCEGVDK 1340 S G+R L E C C+T FG L + Q+V +Q+RG EPKSGTGFM+EWAVN+LMVTC L LYG TC V P + E ++ DM V P +Q G A+ C C VDK Sbjct: 70 STGLRKLQGDE--CPPCETMFGKLNGAQ-----QHVELQLRGASRIQYQEPKSGTGFMFEWAVNALMVTCEELGRLYGEGTCTVRGRRPFSRRKPKPVTPETALDDMKEVIFVINPNRQDGRSSAGGPSASPCPCSTVDK 202 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10569.551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig10569.551.1 >prot_L-elsbetiae_contig10569.551.1 ID=prot_L-elsbetiae_contig10569.551.1|Name=mRNA_L-elsbetiae_contig10569.551.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=353bp MRALGEPEIECARCDTWFGMLARTELGTNVQNVHVQVRGEPKSGTGFMYEback to top mRNA from alignment at L-elsbetiae_contig10569:3296..6193- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig10569.551.1 ID=mRNA_L-elsbetiae_contig10569.551.1|Name=mRNA_L-elsbetiae_contig10569.551.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2898bp|location=Sequence derived from alignment at L-elsbetiae_contig10569:3296..6193- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig10569:3296..6193- >mRNA_L-elsbetiae_contig10569.551.1 ID=mRNA_L-elsbetiae_contig10569.551.1|Name=mRNA_L-elsbetiae_contig10569.551.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2118bp|location=Sequence derived from alignment at L-elsbetiae_contig10569:3296..6193- (Laminarionema elsbetiae ELsaHSoW15)back to top |