mRNA_L-elsbetiae_contig10555.543.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10555.543.1
Unique NamemRNA_L-elsbetiae_contig10555.543.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10555.543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10555contigL-elsbetiae_contig10555:2444..4829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size349
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815278.8044684-CDS-L-elsbetiae_contig10555:2443..25901622815278.8044684-CDS-L-elsbetiae_contig10555:2443..2590Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10555 2444..2590 +
1691682813.1642118-CDS-L-elsbetiae_contig10555:2443..25901691682813.1642118-CDS-L-elsbetiae_contig10555:2443..2590Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10555 2444..2590 +
1622815278.8210037-CDS-L-elsbetiae_contig10555:4627..48281622815278.8210037-CDS-L-elsbetiae_contig10555:4627..4828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10555 4628..4828 +
1691682813.1800082-CDS-L-elsbetiae_contig10555:4627..48281691682813.1800082-CDS-L-elsbetiae_contig10555:4627..4828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10555 4628..4828 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10555.543.1prot_L-elsbetiae_contig10555.543.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10555 2444..4828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10555.543.1

>prot_L-elsbetiae_contig10555.543.1 ID=prot_L-elsbetiae_contig10555.543.1|Name=mRNA_L-elsbetiae_contig10555.543.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=116bp
RDTGDRSVLTGLSHPRLSTPAATHAAARRRKADQHHHHHHYQQQQQQPQT
PQGKQGQRPDGTPRKRQTPKSPDVVTISDSDSSSGDDAGNDGMGMFGMEE
DGCGLPGLGSGVVGSG
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mRNA from alignment at L-elsbetiae_contig10555:2444..4829+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10555.543.1 ID=mRNA_L-elsbetiae_contig10555.543.1|Name=mRNA_L-elsbetiae_contig10555.543.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2386bp|location=Sequence derived from alignment at L-elsbetiae_contig10555:2444..4829+ (Laminarionema elsbetiae ELsaHSoW15)
CGTGACACCGGCGATAGGAGCGTGTTGACGGGTCTATCGCATCCCCGCTT
GTCGACGCCTGCAGCGACTCACGCCGCCGCCCGACGCCGAAAGGCAGATC
AGCACCACCACCACCACCACTACCAACAACAACAACAACAACCACAGGTG
CGCCACGACTTCGTGCCCGGCGGCACTCCAAAAAAATGTATGGTACTCCT
GTTTGTTTTTATCTACACACTCGGGAGTACGTATGTATTTCTCGTGCAAA
AGGGTAAAATATACTTCTAAATAGATATGGTACTTCGTATAAATAAATGG
CTTGTTTGTTCGAAGTGCGCAGCGGGGATGCTGGCTTGTCCACTTTTGTT
TTCGCTTCACCTCGCATATGTAGGATGTAGAGGGGGGCGGAGGGCTCCAG
ACTATCTGTGCCGTCGTGCGTTACAGTAGTATTTACCGTAGGTGACATAA
GATAAGACACCCCCTGGACCGATTTTCAAAGCTCAAGTACTCCACAGCAA
GCAGAGCGCCAGTCCCGAAAAGGGCGGCGTTGGAAAGATCTCGTCGAGAG
CTGTCCGAAAATGTGGCGTTTGTGGTTAGAATCGTATTCGTTGCAGAGTA
ACCAAGCTTTCAATCTCGGTCCAGGGGGTGTCTTGTCTTACGTCACTTAC
GGTAGTAGTGTGCGAGTTTCTCTTTGGCGAAAGCCGTCCTCCGTCTTTGT
GGTCCAGCAGCATCGGTCAGCCAGTCGTGCTTTGGTTCGAGGGACAACGC
TGTGGGTTGAAACGTGTGTCTGTCATTCGTGGGCTTCTGTGACCACCACC
CCACACGCCGGCGAGCGGCGGACATTTTTTCCCAAGGCGTCTCAGAAGAT
ACTCTTTTTTCCTCTGTTTTCCTGTCTCGGACAGGGTATTTAGGGAAAAA
GGAATGAGAGGCTCAACTGCCCTCTCCTGTATTCCGATTCTTTATTGCAT
GAGGGAGATGGAACTCGTTTCCTCTTTTCTCATCTCCGTTTTTAGAGCGC
GGCAGGCAGTCGGTGTGTGAAGCTGTGGACGAGTCGGAGCCTCGGCGGCG
ATGTAGTGCGTGGAGCTATGCACAAGAGTTGAAATCTCTGCTCGTGCATC
GCTGTTTCTTTGTTTCTCCCATGTGTACATGGCACGTATAGGCTTCCTGC
GGCAGGGCCCCCAATTCTGAAGAAGTGACCGCGGTGGGGGATCTTTCACT
CTATTTCCTAGATAAATTTTGAAGTAGATGCCAACATTACGGCATACAGC
GGACTCTACCCGCCTGAATAATTGTTGGCTGACCTCGCAAATCTTAAATC
TTTGCAGGGGAGATGTTGAACTCTTCTGATATTTAGGTTGTTTTTCTGCT
CGCTTCGCCAAATATTACGTCTCTGTTTTATGGAATACCGCTTGAACCCC
ACATCGAGTCTTTGCTCTAGTGTGGAGTAGGTTCCATCTTTGATTCATTG
TTTATTTTTAAATACCCCCTCCCCCCCGCTGTCCCCACAGCTCTTTTTGA
GAATTGGGGGCTATACCTCAGGAAGCATATGTACATGCCAGTAGTGGAAC
CGAAACAAGGGGGAAGGGCATGACCGCCGTGTCGCCAAAACATCGAGACA
CCTTGTGTCGATCAATCACACACAGTAGCGTTTCCATCGATATTTTTCCT
CAGAGGAATGGATGAACGCACATTCTATATTTATATTTTAGGATTAGGGT
TAGGGTTAGATAAAAGTATAAATATTTATATTCCCATCCCGAGTACTACT
GTTCTTGTCCCAAATAAACGCTGTTTTTAAATAGCGTGTCGGGTGCCCCC
CCTCCCGCATTCAAACGGGGTTGACATTGGCACACGACGGCACGCGTCAA
CAGACAAGCGGGATTAAAAGTGAACCACGCTTTTTGGGGGCTTCCCATAA
TCCCGGTTACTCCCCCAAACCTTATCACGTCCCCCCCCCCCCCCCGCCGC
CAGGGGCTCCGTGCTTCACCCGCCATTGGGCGGTTTACATACACGTGTAC
ATAGCAGCCAAAGGCACTGGTTTGGGGTCGCGTACGCTCTGGACTTTACG
CCAGGTAGTAGTTAAGGTGTACGAGGCCTTCACATTCCACCGCATTTGTG
GTCGCAAGTCCGATCGCTTGCCCGTTCTGTTGTTGCGCGTACGCACGATC
GGTGTCGGCGTCCGTGTCGGTGTTGGTGGGACAGACACCCCAGGGGAAGC
AGGGGCAGCGGCCGGACGGAACCCCCCGGAAGCGCCAGACGCCGAAGTCG
CCCGACGTGGTGACCATCAGCGACAGCGACTCTTCCAGCGGCGACGATGC
CGGCAACGACGGCATGGGCATGTTCGGCATGGAGGAGGATGGGTGTGGTC
TCCCCGGGTTGGGAAGCGGGGTGGTCGGGAGCGGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10555:2444..4829+

>mRNA_L-elsbetiae_contig10555.543.1 ID=mRNA_L-elsbetiae_contig10555.543.1|Name=mRNA_L-elsbetiae_contig10555.543.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=696bp|location=Sequence derived from alignment at L-elsbetiae_contig10555:2444..4829+ (Laminarionema elsbetiae ELsaHSoW15)
CGTGACACCGGCGATAGGAGCGTGTTGACGGGTCTATCGCATCCCCGCTT
GTCGACGCCTGCAGCGACTCACGCCGCCGCCCGACGCCGAAAGGCAGATC
AGCACCACCACCACCACCACTACCAACAACAACAACAACAACCACAGCGT
GACACCGGCGATAGGAGCGTGTTGACGGGTCTATCGCATCCCCGCTTGTC
GACGCCTGCAGCGACTCACGCCGCCGCCCGACGCCGAAAGGCAGATCAGC
ACCACCACCACCACCACTACCAACAACAACAACAACAACCACAGACACCC
CAGGGGAAGCAGGGGCAGCGGCCGGACGGAACCCCCCGGAAGCGCCAGAC
GCCGAAGTCGCCCGACGTGGTGACCATCAGCGACAGCGACTCTTCCAGCG
GCGACGATGCCGGCAACGACGGCATGGGCATGTTCGGCATGGAGGAGGAT
GGGTGTGGTCTCCCCGGGTTGGGAAGCGGGGTGGTCGGGAGCGGGACACC
CCAGGGGAAGCAGGGGCAGCGGCCGGACGGAACCCCCCGGAAGCGCCAGA
CGCCGAAGTCGCCCGACGTGGTGACCATCAGCGACAGCGACTCTTCCAGC
GGCGACGATGCCGGCAACGACGGCATGGGCATGTTCGGCATGGAGGAGGA
TGGGTGTGGTCTCCCCGGGTTGGGAAGCGGGGTGGTCGGGAGCGGG
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