mRNA_L-elsbetiae_contig1054.527.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1054.527.1 vs. uniprot
Match: A0A6H5KVV4_9PHAE (HSF_DOMAIN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVV4_9PHAE) HSP 1 Score: 507 bits (1306), Expect = 1.530e-167 Identity = 362/611 (59.25%), Postives = 398/611 (65.14%), Query Frame = 2 Query: 692 MRPMPVKFEHARDVTVRTQKK---QRSSSTGGSGAAAFSPTRRVGARGGPQLFAQKLFTLVEEEDSEIVEWLPDGLAFRVKDIQRFSCEVLEKYFNHSKFTSFQRQLNLYQFKRRKGAHAGAFHHPSFRRGQHQLLSKVRRQKVKRDLAVEARAAQRLARASGGSDCGEEDSEHGG-LSGRGRVRAAAQADLRPIRRXXXXXXXXXXXXXXXXXXXXXXXXXXSRRSALRRRVDARPSTRVGGVGGGIGARYTQDSNSDESSN------DDVWPAESNAGGQEQASXXXXDDRLEWGGGYSN-----WRQQVPGSPERSPRELHHVSTPMTFASQSEYGHSPGGS-SGFDRTSSVGSSMASSLSFTS----SPSPSDMMFHSSSPY--RLNDCDE-GGHSDST----SPVSTHSPVGQKGVTTVKEAAAA---GTQVSPAQQRQRDNDLSLAAVVDATVSGWGSPHQSSSLPRLEQFGWGTGNLAV--DVGGGSSLSDPLVSGMPQHHQSAHGSPHQEDFGFIELFAANWDAGEGTSPSSSSPSSIGSAGMLSXXXXXXXXXXXXXXXSGADIDGASDAFLQEAQAAGVFGGVDEFLVPRSS-GGALGGYG 2425 MRPMPVKF+ A + Q + Q SSTGG G AFSPTRRVGARGGPQLFAQKLFTLVEEEDSEIVEWLPDGLAFRVKDIQRFSCEVLEKYFNHSKFTSFQRQLNLYQFKRRKGAHAGAFHHPSFRRGQ LLSKVRRQKVKRDLAVEARAAQRLAR GG ++ LSGRGR RAAAQADLRPIRR XXXXXXXXXXXXXXXXX + WP +S AGG E+ S D G N WR+QVPGSP RSP L HV TP T S S+Y HSP G G DRTSSV SS+ASSLSF+S SPS SD F SSPY R DCDE GGHSD SP+S HSPVGQ V TV+ AAAA TQ SPA Q Q D DLSLAAVVDA+++GW SPHQSS L LEQFGWG N+ + D GG S +G+P HHQ + SPHQEDFGFI+LFAANWD +G S S +P+S +G+ + XXXXX G +++ SDAFL+EAQAAGVF GV++ LVPRSS GG G +G Sbjct: 1 MRPMPVKFQGAGEAPSMKQHQAQHQELSSTGGGGGTAFSPTRRVGARGGPQLFAQKLFTLVEEEDSEIVEWLPDGLAFRVKDIQRFSCEVLEKYFNHSKFTSFQRQLNLYQFKRRKGAHAGAFHHPSFRRGQRHLLSKVRRQKVKRDLAVEARAAQRLARVKGGXXXXXXNAFVASQLSGRGRTRAAAQADLRPIRRGRKLEDDATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGTWPTQSTAGGLERVSSGDSKDERLCRGQPDNMNNDHWREQVPGSPARSPTGLQHVLTPTTMTSPSDYEHSPVGDFGGLDRTSSVSSSLASSLSFSSAGSCSPSQSDTTFDPSSPYLFRDTDCDESGGHSDPIINQHSPMSIHSPVGQA-VATVQAAAAAVAKATQTSPAMQ-QYDQDLSLAAVVDASLNGWNSPHQSSPLSHLEQFGWGAANITIPGDAGGPWSSEPSPATGVPIHHQLSQASPHQEDFGFIDLFAANWDPNDGGSAPSCTPASSTYSGVRASSPPDNSKSXXXXX-DGRNMND-SDAFLKEAQAAGVFIGVEDLLVPRSSVGGGAGSFG 607
BLAST of mRNA_L-elsbetiae_contig1054.527.1 vs. uniprot
Match: A0A6V1QFS1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QFS1_HETAK) HSP 1 Score: 105 bits (261), Expect = 2.560e-20 Identity = 54/100 (54.00%), Postives = 71/100 (71.00%), Query Frame = 2 Query: 809 RVGARGGPQLFAQKLFTLVEEEDSEIVEWLPDGLAFRVKDIQRFSCEVLEKYFNHSKFTSFQRQLNLYQFKR-RKGAHAGAFHHPSFRRGQHQLLSKVRR 1105 R G RG PQ FA+KL+ ++E E +++ W G AF V+DI RFS E+L KYF HSKF SFQRQLNLY F++ +G+ AG++ H FR+G+ LLS VRR Sbjct: 5 RTGQRGAPQAFARKLYEILEVEPGDLLSWNAAGNAFFVRDIDRFSKEILMKYFRHSKFASFQRQLNLYGFRKITRGSDAGSYAHQYFRKGKPDLLSLVRR 104
BLAST of mRNA_L-elsbetiae_contig1054.527.1 vs. uniprot
Match: A0A835YGA3_9STRA (HSF-type DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGA3_9STRA) HSP 1 Score: 105 bits (261), Expect = 6.040e-20 Identity = 53/100 (53.00%), Postives = 68/100 (68.00%), Query Frame = 2 Query: 809 RVGARGGPQLFAQKLFTLVEEEDSEIVEWLPDGLAFRVKDIQRFSCEVLEKYFNHSKFTSFQRQLNLYQFKRR-KGAHAGAFHHPSFRRGQHQLLSKVRR 1105 R G RG PQ FA KLF L+ E +IV W P GLAFR+ D+++F+ E L KYF H+ SFQRQLNLY F++ KG +G F H SF+R + +LL +VRR Sbjct: 19 RFGKRGAPQAFATKLFELLSNESPDIVSWTPSGLAFRIHDMEKFTSECLIKYFKHNNAASFQRQLNLYGFRKSLKGEDSGGFQHASFQRDRPELLIEVRR 118
BLAST of mRNA_L-elsbetiae_contig1054.527.1 vs. uniprot
Match: A0A7R9YBQ9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBQ9_9STRA) HSP 1 Score: 103 bits (258), Expect = 8.960e-20 Identity = 52/100 (52.00%), Postives = 69/100 (69.00%), Query Frame = 2 Query: 809 RVGARGGPQLFAQKLFTLVEEEDSEIVEWLPDGLAFRVKDIQRFSCEVLEKYFNHSKFTSFQRQLNLYQFKR-RKGAHAGAFHHPSFRRGQHQLLSKVRR 1105 R G RG PQ+F +KLF L+E+EDS ++ W +G F ++D+ F+ E LE+YF H KFTSFQRQLNLY F++ KG G + HP F+R + LSKVRR Sbjct: 50 RTGKRGAPQVFPRKLFELLEKEDSAVIRWDEEGECFVIQDMDTFTRESLERYFKHHKFTSFQRQLNLYGFRKIAKGERCGYYVHPHFQRDHPEWLSKVRR 149
BLAST of mRNA_L-elsbetiae_contig1054.527.1 vs. uniprot
Match: A0A7S2BSE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSE7_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 6.880e-19 Identity = 45/100 (45.00%), Postives = 67/100 (67.00%), Query Frame = 2 Query: 809 RVGARGGPQLFAQKLFTLVEEEDSEIVEWLPDGLAFRVKDIQRFSCEVLEKYFNHSKFTSFQRQLNLYQFKR-RKGAHAGAFHHPSFRRGQHQLLSKVRR 1105 R G RG PQ+F +KL+ ++ E +I+ W G +F +K+++ F +L KYF H K++SFQRQLNLY F++ +KG G++ H F R Q +LL+KVRR Sbjct: 5 RTGRRGAPQVFPRKLYEILSTEREDIIGWTDSGKSFIIKEMETFVTNILMKYFRHQKYSSFQRQLNLYGFRKVQKGTDVGSYAHECFIRDQPELLTKVRR 104
BLAST of mRNA_L-elsbetiae_contig1054.527.1 vs. uniprot
Match: A0A7S2R5C8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5C8_9STRA) HSP 1 Score: 101 bits (251), Expect = 8.270e-19 Identity = 66/178 (37.08%), Postives = 95/178 (53.37%), Query Frame = 2 Query: 581 PQPLTPNF--NSRWHQKS*APRQPLSATALLTPASSSSKMRPMPVKFEHARDVTVRTQKKQRSSSTGGSGAAAFSPTRRVGARGGPQLFAQKLFTLVEEEDSEIVEWLPDGLAFRVKDIQRFSCEVLEKYFNHSKFTSFQRQLNLYQFKR-RKGAHAGAFHHPSFRRGQHQLLSKVRR 1105 P PL+ N ++RW+ + R P ++A+ PA ++RP + H TV S GG+G + R G RG PQ+F +KL+ +++ E + + W G +F +KD++ F VL KYF H KF+SFQRQLNLY F++ KG GA+ H F R Q L VRR Sbjct: 3 PAPLSANLPLSARWYPPN---RGPHPSSAMPGPAQ---QLRPRRISARHKESSTV--------SHRGGAGKSDAMRYPRTGKRGAPQVFPRKLYEILDNESEDTISWTESGHSFVIKDMETFVTSVLMKYFRHQKFSSFQRQLNLYGFRKISKGTETGAYCHEFFARDQTDKLRLVRR 166
BLAST of mRNA_L-elsbetiae_contig1054.527.1 vs. uniprot
Match: A0A6H5KMN3_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMN3_9PHAE) HSP 1 Score: 100 bits (250), Expect = 2.880e-18 Identity = 51/100 (51.00%), Postives = 69/100 (69.00%), Query Frame = 2 Query: 809 RVGARGGPQLFAQKLFTLVEEEDSEIVEWLPDGLAFRVKDIQRFSCEVLEKYFNHSKFTSFQRQLNLYQFKRR-KGAHAGAFHHPSFRRGQHQLLSKVRR 1105 R+G RG PQ FA+KL ++ E + + W +G AF+V D++RFS ++L KY+ HSKF+SFQRQLNLY F++ KGA AG + HP FRR + L VRR Sbjct: 33 RIGKRGAPQAFARKLAEILATESTATISWNANGSAFQVHDVERFSEDILTKYYRHSKFSSFQRQLNLYSFRKIVKGADAGGYAHPMFRRDRPDDLYHVRR 132
BLAST of mRNA_L-elsbetiae_contig1054.527.1 vs. uniprot
Match: A0A835Z6Z9_9STRA (HSF-type DNA-binding-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Z9_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 6.690e-18 Identity = 44/98 (44.90%), Postives = 65/98 (66.33%), Query Frame = 2 Query: 815 GARGGPQLFAQKLFTLVEEEDSEIVEWLPDGLAFRVKDIQRFSCEVLEKYFNHSKFTSFQRQLNLYQFKR-RKGAHAGAFHHPSFRRGQHQLLSKVRR 1105 G RG PQ F ++L+ L++EED+ +V W+ +G F + D+ F L KYF H+K+TSFQRQ NLY F++ +G AG + H F++G+ + L KVRR Sbjct: 1 GKRGAPQAFPRRLYELLQEEDASVVSWIKNGEGFIINDMDTFVNTTLVKYFQHNKYTSFQRQCNLYGFRKITRGPDAGMYIHEHFKKGRLEDLVKVRR 98
BLAST of mRNA_L-elsbetiae_contig1054.527.1 vs. uniprot
Match: A0A812YT23_SYMMI (HSF2 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YT23_SYMMI) HSP 1 Score: 96.3 bits (238), Expect = 7.750e-18 Identity = 46/90 (51.11%), Postives = 66/90 (73.33%), Query Frame = 2 Query: 839 FAQKLFTLVEEEDSEIVEWLPDGLAFRVKDIQRFSCEVLEKYFNHSKFTSFQRQLNLYQFKR-RKGAHAGAFHHPSFRRGQHQLLSKVRR 1105 F QKLF L+E E +++V W GL+FRV D ++F+ EV+ KYF H+K TSFQRQLNLY F+R KG G+++HP F+RG+ +S+++R Sbjct: 13 FPQKLFALMEMEPADVVCWTERGLSFRVVDPEKFAEEVVPKYFRHTKMTSFQRQLNLYGFRRVTKGEDTGSYYHPKFQRGRRDFISEIKR 102
BLAST of mRNA_L-elsbetiae_contig1054.527.1 vs. uniprot
Match: A0A7S2WU52_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WU52_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 2.360e-17 Identity = 49/100 (49.00%), Postives = 68/100 (68.00%), Query Frame = 2 Query: 809 RVGARGGPQLFAQKLFTLVEEEDSEIVEWLPDGLAFRVKDIQRFSCEVLEKYFNHSKFTSFQRQLNLYQFKR-RKGAHAGAFHHPSFRRGQHQLLSKVRR 1105 R G RG PQ+FA+KL+ +++ E + + W G +F +K++ F VL KYF H K++SFQRQLNLY F++ KG+ AGA+ H SF RGQ +LL VRR Sbjct: 159 RTGKRGAPQVFARKLYEILDNEPPDAISWTTSGTSFVIKEMDAFVTCVLMKYFRHQKYSSFQRQLNLYGFRKISKGSDAGAYAHESFIRGQPELLHFVRR 258 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1054.527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1054.527.1 >prot_L-elsbetiae_contig1054.527.1 ID=prot_L-elsbetiae_contig1054.527.1|Name=mRNA_L-elsbetiae_contig1054.527.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=586bp MRPMPVKFEHARDVTVRTQKKQRSSSTGGSGAAAFSPTRRVGARGGPQLFback to top mRNA from alignment at L-elsbetiae_contig1054:6837..10336- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1054.527.1 ID=mRNA_L-elsbetiae_contig1054.527.1|Name=mRNA_L-elsbetiae_contig1054.527.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3500bp|location=Sequence derived from alignment at L-elsbetiae_contig1054:6837..10336- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1054:6837..10336- >mRNA_L-elsbetiae_contig1054.527.1 ID=mRNA_L-elsbetiae_contig1054.527.1|Name=mRNA_L-elsbetiae_contig1054.527.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3516bp|location=Sequence derived from alignment at L-elsbetiae_contig1054:6837..10336- (Laminarionema elsbetiae ELsaHSoW15)back to top |