mRNA_L-elsbetiae_contig10533.524.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig10533.524.1 vs. uniprot
Match: A0A6H5J6M6_9PHAE (SHQ1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6M6_9PHAE) HSP 1 Score: 228 bits (582), Expect = 7.320e-68 Identity = 115/151 (76.16%), Postives = 125/151 (82.78%), Query Frame = 1 Query: 76 MPATPRFTVSQTDSAVVVCIKVPHIRVGGAESHVDGKEFSFYCKPYLLRLTLPHEVGAEDDDGSCKAVYDPADDNGTITVTLRKATPGLHFPDLDLTTTLMQPRWTPKDLLKERPA--DAGGSPDGAPASS--GVEVLSSEHYDVRDDDED 516 MPATPRF VSQTD AVVVCIKVPHIRVG AE+HVDG +FSFYCKPYLLRLTLP+EVG EDDDGSCKAVYDP+D+NGTITV PG HFPDLDLTTTLMQPRWTPKDLLKERP+ D GG+ P SS GVEV+SSE YD+ D +D Sbjct: 1 MPATPRFKVSQTDLAVVVCIKVPHIRVGSAETHVDGTDFSFYCKPYLLRLTLPYEVGGEDDDGSCKAVYDPSDENGTITVI-----PGQHFPDLDLTTTLMQPRWTPKDLLKERPSGGDEGGAEGDVPVSSFSGVEVVSSERYDIHGDGDD 146
BLAST of mRNA_L-elsbetiae_contig10533.524.1 vs. uniprot
Match: D8LCQ4_ECTSI (SHQ1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCQ4_ECTSI) HSP 1 Score: 164 bits (415), Expect = 3.460e-43 Identity = 76/87 (87.36%), Postives = 81/87 (93.10%), Query Frame = 1 Query: 76 MPATPRFTVSQTDSAVVVCIKVPHIRVGGAESHVDGKEFSFYCKPYLLRLTLPHEVGAEDDDGSCKAVYDPADDNGTITVTLRKATP 336 MPATPRF VSQTD AVVVCIKVPHIRVG AE+HVDG EFSFYCKPYLLRLTLP+EVG EDDDGSCKAVYDP+D+NGTITVTL+KA P Sbjct: 1 MPATPRFKVSQTDLAVVVCIKVPHIRVGSAETHVDGTEFSFYCKPYLLRLTLPYEVGGEDDDGSCKAVYDPSDENGTITVTLKKAAP 87
BLAST of mRNA_L-elsbetiae_contig10533.524.1 vs. uniprot
Match: A0A835YXH0_9STRA (SHQ1 protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXH0_9STRA) HSP 1 Score: 149 bits (375), Expect = 7.780e-38 Identity = 78/138 (56.52%), Postives = 94/138 (68.12%), Query Frame = 1 Query: 76 MPATPRFTVSQTDSAVVVCIKVPHIRVGGAESHV--DGKEFSFYCKPYLLRLTLPHEVGAEDDDGSCKAVYDPADDNGTITVTLRKATPGLHFPDLDLTTTLMQPRWTPKDLLKERPADAGGSPDGAPASSGVEVLSS 483 MP TPRF+V QTD V V I+VPHIRV AE+HV DG SFYCKPYLL+L LP V EDD+ C+AVYDPA D GT+ + L KAT G HFPDLDLT+ L+QP+W P L +R A+ A +G+EVL+S Sbjct: 1 MPVTPRFSVEQTDDFVCVTIRVPHIRVSAAETHVEEDGCGVSFYCKPYLLKLRLPLPVRGEDDE-RCRAVYDPAADGGTVVLHLPKATAGQHFPDLDLTSALLQPKWDPSKELADRAAERA-----AEGGTGIEVLAS 132
BLAST of mRNA_L-elsbetiae_contig10533.524.1 vs. uniprot
Match: A0A6G0XW87_9STRA (CS domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XW87_9STRA) HSP 1 Score: 128 bits (321), Expect = 3.460e-31 Identity = 69/136 (50.74%), Postives = 85/136 (62.50%), Query Frame = 1 Query: 76 MPATPRFTVSQTDSAVVVCIKVPHIRVGGAESHVDGKEFSFYCKPYLLRLTLPHEVGAEDDDGSCKAVYDPADDNGTITVTLRKATPGLHFPDLDLTTTLMQPRWTPKDLLKERPADAGGSPDGAPASSGVEVLSS 483 MP+TPRF V+Q + V V I VP++RV E H+DG FSF+CKPYLL LT P GA DD KAVYD ++GTITV L K TP HFPDLDL TTL+Q +W P+D G PD P + ++V+ S Sbjct: 1 MPSTPRFKVTQDATTVFVEIHVPYVRVSEMEYHIDGTNFSFWCKPYLLNLTFP---GAVVDDDRAKAVYDMNKNHGTITVHLPKETPDAHFPDLDLLTTLLQKKWKPEDE---------GLPDSLPKAPLIQVVES 124
BLAST of mRNA_L-elsbetiae_contig10533.524.1 vs. uniprot
Match: A0A8K1FE71_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FE71_PYTOL) HSP 1 Score: 124 bits (310), Expect = 1.720e-29 Identity = 72/143 (50.35%), Postives = 86/143 (60.14%), Query Frame = 1 Query: 76 MPATPRFTVSQTDSAVVVCIKVPHIRVGGAESHVDGKEFSFYCKPYLLRLTLPHEVGAEDDDGSCKAVYDPADDNGTITVTLRKATPGLHFPDLDLTTTLMQPRWTPKDLLKERPADAGGSPDGAPASSGVEVLSSEHYDVRD 504 MP+ PRF V+Q + V V + VP++RV E HV+G FSFYCKPYLL+L PHEV DD KAVYDP DNGTITV L K PG HF DLDL T L+QP+ P L+ + APA +EVL S+ D D Sbjct: 1 MPSIPRFHVTQDAAFVYVHVNVPYVRVSEMEFHVEGLHFSFYCKPYLLKLQFPHEVV---DDDLAKAVYDPNVDNGTITVHLPKKDPGQHFEDLDLITKLLQPKKAPVVDLQAK---------SAPAPL-IEVLDSQTTDTTD 130
BLAST of mRNA_L-elsbetiae_contig10533.524.1 vs. uniprot
Match: A0A7S1U3V6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3V6_9STRA) HSP 1 Score: 113 bits (282), Expect = 9.510e-29 Identity = 59/101 (58.42%), Postives = 68/101 (67.33%), Query Frame = 1 Query: 76 MPATPRFTVSQTDSAVVVCIKVPHIRVGGAESHVDGKEFSFYCKPYLLRLTLPHEVGAEDDDGSCKAVYDPADDNGTITVTLRKATPGLHFPDLDLTTTLM 378 MP TP+F++ Q D V V I VP IRV AE HV+G FSFYCKPYLL+LTLP EV DD C+ VYD +NGTIT L KA PG FPDLDL + L+ Sbjct: 1 MPTTPKFSLRQDDDFVYVDIHVPWIRVSEAEIHVEGCAFSFYCKPYLLKLTLPGEVV---DDERCRGVYDLDKNNGTITAHLPKAEPGTFFPDLDLKSRLL 98
BLAST of mRNA_L-elsbetiae_contig10533.524.1 vs. uniprot
Match: A0A5D6XNA5_9STRA (CS domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XNA5_9STRA) HSP 1 Score: 122 bits (305), Expect = 1.110e-28 Identity = 74/148 (50.00%), Postives = 88/148 (59.46%), Query Frame = 1 Query: 76 MPATPRFTVSQTDSAVVVCIKVPHIRVGGAESHVDGKEFSFYCKPYLLRLTLPHEVGAEDDDGSCKAVYDPADDNGTITVTLRKATPGLHFPDLDLTTTLMQPRWTPKDLLKERPADAGGSPDGAPASSGVEVLSSEHYDVRDDDEDA 519 MP PRF V+Q + + V + VP +RVG E VDG FSFYCKP+LL+L PHEV DD KAVYDP ++NGTI V L K PGL FPDLDL T L+QP KDL + A + AP +EVL S+ DDEDA Sbjct: 1 MPTIPRFRVTQDAAWIFVHVHVPFVRVGDMEFDVDGTHFSFYCKPFLLKLQFPHEVV---DDELAKAVYDPNEENGTIVVHLLKKEPGLEFPDLDLLTKLLQP----KDLKLDLGLHASRA---APL---IEVLHSDATAANGDDEDA 135
BLAST of mRNA_L-elsbetiae_contig10533.524.1 vs. uniprot
Match: A0A7S3HKC7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HKC7_9STRA) HSP 1 Score: 119 bits (297), Expect = 1.850e-28 Identity = 68/152 (44.74%), Postives = 93/152 (61.18%), Query Frame = 1 Query: 85 TPRFTVSQTDSAVVVCIKVPHIRVGGAESHVDGKEFSFYCKPYLLRLTLPHEVGAEDDDGSCKAVYDPADDNGTITVTLRKATPGLHFPDLDLTTTLMQPRWTPKDLLKERPADAGGSPDGAPASSGVEVLSSEHYDVRDDDEDADESSSPS 540 TP+FT+SQ D V++ +K+P+IR+ E + FS YCKPYLL+LT + ED++ CKA YDP DNGT+ L K G HFPDLDLTT+L+Q L K++ A A G A + +EVLSSE + + ++DE+ SS PS Sbjct: 3 TPKFTISQNDEFVIITVKMPYIRMSALEMIAEDCNFSLYCKPYLLKLTFACQFKEEDEE--CKATYDPFSDNGTLIAYLPKLNHGEHFPDLDLTTSLLQ-------LNKKKSAVAAG----AEKVNSIEVLSSEDFVMENNDEEDAASSLPS 141
BLAST of mRNA_L-elsbetiae_contig10533.524.1 vs. uniprot
Match: G4ZMP3_PHYSP (CS domain-containing protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZMP3_PHYSP) HSP 1 Score: 112 bits (280), Expect = 5.940e-28 Identity = 59/110 (53.64%), Postives = 71/110 (64.55%), Query Frame = 1 Query: 76 MPATPRFTVSQTDSAVVVCIKVPHIRVGGAESHVDGKEFSFYCKPYLLRLTLPHEVGAEDDDGSCKAVYDPADDNGTITVTLRKATPGLHFPDLDLTTTLMQPRWTPKDL 405 M ATPRF V+Q + V V + VP +RV E +VDG +F+FYCKPYLL+L PHEV DD KAVYDP DNG I V L K G HFPDLD+ T L+Q + P D+ Sbjct: 1 MVATPRFHVTQDAAWVFVHVHVPFVRVSEMEFYVDGLDFTFYCKPYLLKLHFPHEVV---DDELAKAVYDPNKDNGMIVVHLPKKEAGQHFPDLDMLTKLLQSQRPPVDV 107
BLAST of mRNA_L-elsbetiae_contig10533.524.1 vs. uniprot
Match: A0A485LUB9_9STRA (Aste57867_24266 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LUB9_9STRA) HSP 1 Score: 119 bits (298), Expect = 6.850e-28 Identity = 61/110 (55.45%), Postives = 75/110 (68.18%), Query Frame = 1 Query: 76 MPATPRFTVSQTDSAVVVCIKVPHIRVGGAESHVDGKEFSFYCKPYLLRLTLPHEVGAEDDDGSCKAVYDPADDNGTITVTLRKATPGLHFPDLDLTTTLMQPR-WTPKD 402 MP+TPRFTV+Q + V V I VP++RV E H+DG F+F+CKPYLL LT P V DD KAVYD ++GTI V L K TP +HFPDLDL TTL+Q + W P+D Sbjct: 1 MPSTPRFTVTQDATTVFVEIHVPYVRVSEMEYHIDGCNFTFWCKPYLLNLTFPRAVV---DDDRAKAVYDINKEHGTIMVHLPKETPDIHFPDLDLLTTLLQQKKWRPQD 107 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10533.524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig10533.524.1 >prot_L-elsbetiae_contig10533.524.1 ID=prot_L-elsbetiae_contig10533.524.1|Name=mRNA_L-elsbetiae_contig10533.524.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=206bp GSELLLWRVCKRDTAAYRRNDLVDSMPATPRFTVSQTDSAVVVCIKVPHIback to top mRNA from alignment at L-elsbetiae_contig10533:2028..4895+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig10533.524.1 ID=mRNA_L-elsbetiae_contig10533.524.1|Name=mRNA_L-elsbetiae_contig10533.524.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2868bp|location=Sequence derived from alignment at L-elsbetiae_contig10533:2028..4895+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig10533:2028..4895+ >mRNA_L-elsbetiae_contig10533.524.1 ID=mRNA_L-elsbetiae_contig10533.524.1|Name=mRNA_L-elsbetiae_contig10533.524.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1236bp|location=Sequence derived from alignment at L-elsbetiae_contig10533:2028..4895+ (Laminarionema elsbetiae ELsaHSoW15)back to top |