mRNA_L-elsbetiae_contig10383.399.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10383.399.1
Unique NamemRNA_L-elsbetiae_contig10383.399.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10383.399.1 vs. uniprot
Match: T0R1T5_SAPDV (TKL protein kinase n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R1T5_SAPDV)

HSP 1 Score: 48.5 bits (114), Expect = 6.380e-5
Identity = 27/59 (45.76%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:    7 LHVAAEEANSQMTQLLLLQKGADADKLDEDNSTPIYIAAREGFVTVVRVLMAWGPDSSL 183
            LHVAA + +  + QLLL Q   + D LD   STP+Y+AA  G VTVV+ L+    D +L
Sbjct:  875 LHVAAADDSRDIVQLLLDQPRIEVDALDCMRSTPLYVAAAHGHVTVVQQLLRANADVAL 933
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BLAST of mRNA_L-elsbetiae_contig10383.399.1 vs. uniprot
Match: A0A6F9BYH4_9TELE (Uncharacterized protein (Fragment) n=1 Tax=Coregonus sp. 'balchen' TaxID=861768 RepID=A0A6F9BYH4_9TELE)

HSP 1 Score: 48.1 bits (113), Expect = 8.600e-5
Identity = 26/61 (42.62%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:    1 TTLHVAAEEANSQMTQLLLLQKGADADKLDEDNSTPIYIAAREGFVTVVRVLMAWGPDSSL 183
            T LH AA E  ++  +++L       DKLDED ST +++AAREG V  V +L+  G + SL
Sbjct:  360 TCLHHAAAEGYTRTVKIVLATNIKLLDKLDEDGSTALHVAAREGHVAAVSLLLRRGAEISL 420
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BLAST of mRNA_L-elsbetiae_contig10383.399.1 vs. uniprot
Match: A0A3N7AD23_9BURK (Uncharacterized protein n=3 Tax=Herminiimonas TaxID=303379 RepID=A0A3N7AD23_9BURK)

HSP 1 Score: 47.8 bits (112), Expect = 9.580e-5
Identity = 26/62 (41.94%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:    1 TTLHVAAEEANSQMTQLLLLQKGADADKLDEDNSTPIYIAAREGFVTVVRVLMAWGPDSSLK 186
            T LH AA   +S++ ++L+ Q GA+ D    +N+TP+ +AAR GF+  V+VL   G D+S+K
Sbjct:  139 TALHYAAACGDSEIVRVLVKQ-GAELDARSPNNTTPMMMAARGGFIYSVKVLSDAGADASIK 199
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10383.399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
T0R1T5_SAPDV6.380e-545.76TKL protein kinase n=1 Tax=Saprolegnia diclina (st... [more]
A0A6F9BYH4_9TELE8.600e-542.62Uncharacterized protein (Fragment) n=1 Tax=Coregon... [more]
A0A3N7AD23_9BURK9.580e-541.94Uncharacterized protein n=3 Tax=Herminiimonas TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10383contigL-elsbetiae_contig10383:2760..2948 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815264.7805922-CDS-L-elsbetiae_contig10383:2759..29481622815264.7805922-CDS-L-elsbetiae_contig10383:2759..2948Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10383 2760..2948 +
1691682804.9775352-CDS-L-elsbetiae_contig10383:2759..29481691682804.9775352-CDS-L-elsbetiae_contig10383:2759..2948Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10383 2760..2948 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10383.399.1prot_L-elsbetiae_contig10383.399.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10383 2760..2948 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10383.399.1

>prot_L-elsbetiae_contig10383.399.1 ID=prot_L-elsbetiae_contig10383.399.1|Name=mRNA_L-elsbetiae_contig10383.399.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=63bp
TTLHVAAEEANSQMTQLLLLQKGADADKLDEDNSTPIYIAAREGFVTVVR
VLMAWGPDSSLKC
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mRNA from alignment at L-elsbetiae_contig10383:2760..2948+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10383.399.1 ID=mRNA_L-elsbetiae_contig10383.399.1|Name=mRNA_L-elsbetiae_contig10383.399.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=189bp|location=Sequence derived from alignment at L-elsbetiae_contig10383:2760..2948+ (Laminarionema elsbetiae ELsaHSoW15)
ACTACCCTCCACGTCGCCGCCGAAGAAGCTAACTCACAGATGACCCAGCT
GCTACTGCTGCAGAAAGGGGCCGATGCTGACAAATTGGACGAAGACAACT
CGACGCCTATCTACATAGCAGCCCGAGAGGGGTTCGTCACTGTGGTGCGG
GTTCTCATGGCTTGGGGACCTGATTCAAGTCTTAAGTGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10383:2760..2948+

>mRNA_L-elsbetiae_contig10383.399.1 ID=mRNA_L-elsbetiae_contig10383.399.1|Name=mRNA_L-elsbetiae_contig10383.399.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=378bp|location=Sequence derived from alignment at L-elsbetiae_contig10383:2760..2948+ (Laminarionema elsbetiae ELsaHSoW15)
ACTACCCTCCACGTCGCCGCCGAAGAAGCTAACTCACAGATGACCCAGCT
GCTACTGCTGCAGAAAGGGGCCGATGCTGACAAATTGGACGAAGACAACT
CGACGCCTATCTACATAGCAGCCCGAGAGGGGTTCGTCACTGTGGTGCGG
GTTCTCATGGCTTGGGGACCTGATTCAAGTCTTAAGTGCACTACCCTCCA
CGTCGCCGCCGAAGAAGCTAACTCACAGATGACCCAGCTGCTACTGCTGC
AGAAAGGGGCCGATGCTGACAAATTGGACGAAGACAACTCGACGCCTATC
TACATAGCAGCCCGAGAGGGGTTCGTCACTGTGGTGCGGGTTCTCATGGC
TTGGGGACCTGATTCAAGTCTTAAGTGC
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