mRNA_L-elsbetiae_contig10300.349.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig10300.349.1 vs. uniprot
Match: A0A6H5JJ53_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJ53_9PHAE) HSP 1 Score: 862 bits (2226), Expect = 1.170e-299 Identity = 438/474 (92.41%), Postives = 457/474 (96.41%), Query Frame = 1 Query: 25 TAKYGWTPLHAAARGNAEAMGAVMNSLVNYMEADELKEQLSQSHDKDSDLPTPLMFAAASSSLDSRSLNPLLGELLGSMCDIDEARRQRTAVDYAAAYGRLDTLSCLMAYGCEISDQTVTTLLSGDLAVGAAAFNRCIWKGITTARNPLIPAHNVLRAVGRAADRDAKHRQFLLRMQSDVDELVQEMLQQLPPNMAGFAENHMDTGQGFEAVQWLLEPEMAGKRIPSFTGPLARALECRRLDFFSSNIVLAYVSRKFSRGLPGIFSGASWKMPDMHNRDTKRFVLGLPYGAAPDNIVGAVRMRLLVPFELIQGSALRRTSLIPGLQFNCVGLASRPDAFYEVPAVRMAFDVITYLSMLILFCFVVKLDSPTEIPGREIAFYAYMLGNMVNELGEARYVRKLRGQSQLWNVVEAVLLGLVCAAFSFRMVALLSDVIQEEAFFLAQLFFAIAAPLFFSRVLFLAQIDENLGLMVQV 1446 TAKYGWTPLHAAARG MGAVM +LVNYMEADELKEQLSQSHDKDSDLPTPLMFAAASSSLDSRSLNPLL ELLG MCDIDEARRQRTAVDYAAAYGRLDTLSCL+AYGCEISDQTVTTLLSGDLAVGAAAFNRCIWKGITTARNPLIPAHNVLRAV RAADRDAKHRQFLLRMQSDVDELVQEMLQQLPPNMAGFA+N+MDTGQGFEAVQWLLEPEM GKRI SFTGPLARALE RRL+FFS+NIVLAYVSRKFSRGLPG+FSGASWKMPDMHNRDT+RFVLGLPYGAAPDN+VGAVRMRL VPFELIQGSALRRTSLIPGLQFNCVGLASRPDAFYEVPAVRMA DV+TYLSMLILFCFVVKL+SPT+IP +E+AFY YMLGNMVNELGEARYVRKLRGQS+LWNVVEAVLLGLVCAAF+FRMVA SDVI+EEAFFLAQLFFA+AAPLFFSRVLFLAQIDENLGLMVQ+ Sbjct: 528 TAKYGWTPLHAAARGXXXXMGAVMTALVNYMEADELKEQLSQSHDKDSDLPTPLMFAAASSSLDSRSLNPLLSELLGCMCDIDEARRQRTAVDYAAAYGRLDTLSCLIAYGCEISDQTVTTLLSGDLAVGAAAFNRCIWKGITTARNPLIPAHNVLRAVSRAADRDAKHRQFLLRMQSDVDELVQEMLQQLPPNMAGFADNYMDTGQGFEAVQWLLEPEMGGKRISSFTGPLARALETRRLEFFSTNIVLAYVSRKFSRGLPGVFSGASWKMPDMHNRDTRRFVLGLPYGAAPDNVVGAVRMRLCVPFELIQGSALRRTSLIPGLQFNCVGLASRPDAFYEVPAVRMACDVVTYLSMLILFCFVVKLESPTKIPAKEVAFYVYMLGNMVNELGEARYVRKLRGQSELWNVVEAVLLGLVCAAFTFRMVAFGSDVIEEEAFFLAQLFFAMAAPLFFSRVLFLAQIDENLGLMVQI 1001
BLAST of mRNA_L-elsbetiae_contig10300.349.1 vs. uniprot
Match: A0A6H5KIV5_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KIV5_9PHAE) HSP 1 Score: 120 bits (300), Expect = 4.710e-25 Identity = 124/430 (28.84%), Postives = 198/430 (46.05%), Query Frame = 1 Query: 220 RSLNPLLGELLG-SMCDIDEARRQRTAVDYAAAYGRLDTLSCLMAYGCEISDQTVTTLLSGDLAVGAAAFNRCIWKGITTARNPLIPAHNVLRAVGRAADRDAK-HRQFLLRMQSDVDELVQEMLQQLPPNMAGFAENHMDTGQGFEAVQWLLEPEMAGKR---IPSF------------TGPLARALECR-RLDFFSSN-IVLAYVSRKFSRGLPGIFSGASWKMPDMHNRDTKRFVLGLPYGAAPDNIVGAVRMRLLVPFELIQGS--ALRRTSLIPGLQFNCVGLASRPDAFYEVPAVRMAFDVITYLSMLILFCFVVKLDSPTEIPGREIAFYAYMLGNMVNELGEARYVRKLRGQSQLWNVVEAVLLGLVCAAFSFRMVALLSDVIQEEAFFLAQLFFAIAAPLFFSRVLFLAQIDENLGLMVQV 1446 R++NP++ + L +M ++ + Q + + + SCL+ +G + + V+ L G A G A +C + +A NPL+ + + AA + RQ LR+Q++V++LV E+ ++LP + GF E + G G +A + PE R IPS +GPL AL+ R +L+ F + +VL Y++R F+RGLPG+ + + + + + A G V LL E+++GS L +L G QF + +RP Y VPAVRMA D++ YL ML LF V + E+ F+ Y+LG ++ E+ E R+ WN ++ L AF R V E+ + L+ A APL R LF AQ G M++V Sbjct: 124 RAVNPIIDDCLPLAMSEVLMSNSQVPGNEAVSVF------SCLIKHGAAPTPRQVS--LVGRKA-GFEAARKCFLDAVCSAVNPLLVGMRLSLLLADAAGMGNEGQRQVALRLQNEVEDLVLEVFERLPQTVDGFREGDVG-GSGMDACSVVFAPEKIRPRDETIPSHLFQDGTGGTRVDSGPLEMALQARHQLELFCTQPLVLDYLNRAFTRGLPGLDASETGAQEADQFKLLMQRNASVQVNAGDGESSGEVSRELL---EVLEGSHSVLGSLTLSAGKQFILAQVVARPAFSYSVPAVRMAVDLLVYLLMLALFAKDVLWYKEGTVEVGEVVFFVYVLGAILVEITELWDGRE-EYMKDHWNALDVAALAFCGGAFLVR-------VYDPESLWGRALYCA-GAPLLLFRTLFFAQFMPAQGPMIEV 531
BLAST of mRNA_L-elsbetiae_contig10300.349.1 vs. uniprot
Match: D8LM43_ECTSI (Ankyrin repeat Transient receptor potential channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM43_ECTSI) HSP 1 Score: 119 bits (299), Expect = 7.310e-25 Identity = 92/283 (32.51%), Postives = 138/283 (48.76%), Query Frame = 1 Query: 646 GFEAVQWLLEPEMAGKRIPSFTGPLARALECRRLDFFSSNIVLAYVSRKFSRGLPGIFSGASWKMPDMH-NRDTKRFVLGLPYGAAPDNIVGAVRMRLLVPFELIQGSALRRTS--LIPGLQFNCVGLASRPDAFYEVPAVRMAFDVITYLSMLILFCF-VVKLDSPTEIPGREIAFYAYMLGNMVNELGEARYVRKLRGQS-QLWNVVEAVLLGLVCAAFSFRMVALLSD----------------VIQEEAFFLAQLFFAIAAPLFFSRVLFLAQIDENLG 1431 G VQ +LEPE+AG + GPLA+A++ R +DF + +V+ Y+ KFS GLP F W+ +R+ RF+ V +L+V ++QG S +PGLQF G+A + AF+ VPA+R+A DV+ Y ++ +F VV L I ++ + Y++G + ++ E + LR WNVVEA L + AF FRM A + D V + +LAQ F A +AP +VLFL Q+ +LG Sbjct: 527 GTTLVQEMLEPELAGLQPRDCAGPLAQAMQSRHVDFIYTPLVVDYLRLKFSAGLPNPFRETDWRREHGRVDRNLARFM------------VNEDESQLMV--YILQGGCPDSPSWTYLPGLQFILAGVAGKTAAFFGVPAMRLALDVLVYTGVVSVFVLKVVVLRDVGRITAWDVLWLVYLVGAIWKQVHEVQEAGSLRVHLFNPWNVVEATKLASLSTAFFFRMHAWVCDGHGEYFCGQLSTGSGSVNELNEVYLAQYFQAASAPFVLGKVLFLTQVHSSLG 795
BLAST of mRNA_L-elsbetiae_contig10300.349.1 vs. uniprot
Match: A0A6H5LDE6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDE6_9PHAE) HSP 1 Score: 119 bits (298), Expect = 1.080e-24 Identity = 113/392 (28.83%), Postives = 178/392 (45.41%), Query Frame = 1 Query: 322 RLDTLSCLMAYGCEISDQTVTTLLSGDLAVGAAAFNRCIWKGITTARNPLIPAHNVLRAVGRAADRDAK-HRQFLLRMQSDVDELVQEMLQQLPPNMAGFAENHMDTGQGFEAVQWLLEPEMAGKRIPSFTGPLARALECRRL--DFFSSNIVLAYVSRKFSRGLPGIFSGASWKMPDMHNRDTKRFVLGLP------YGAA--PDNIVGAVRMRLLVPFELIQGSALRRTSLIPGLQFNCVGLASRPDAFYEVPAVRMAFDVITYLSMLILFC-FVVKLDSPTEIPGREIAFYAYMLGNMVNELGEA-----RYVRKLRGQSQLWNVVEAVLLGLVCAAFSFRMVALLSDVIQEEAFFLAQLFFAIAAPLFFSRVLFLAQIDENLGLMVQV 1446 RL L+ L+ G + +++ + L + V + I++A NP IP N+ A A R + ++ L MQ+ VDEL+ E+L+ +P + GF D FE PE R + GPL L R + + +VL +++RKF++GLP + RDT+ +L YG + V M L + G AL + PG +F G SRP ++Y+VPA+RM D++TY+SM+I+F FV+ ++ EI F Y+ G ++ E E Y+R WN+++ L L+ RM + D + A++APL F+R+LF AQI + G M+QV Sbjct: 895 RLSVLAYLLQQGAKPTNKGLLRLSN---LVKFPRLKESLLGAISSANNPFIPGMNLSVACTTATRRAMEGEKRRLASMQAAVDELLLEVLEHMPQTVKGFKGEMRDCSAIFE-------PETVISRFHGYQGPLHVVLSKREQMETYCTIPLVLDFMTRKFTKGLPSL-------------RDTEGVLLSNKGFTQTLYGGGLLAEGKVFFFGMALQRGYA---GGALSSITYFPGARFIIAGFLSRPGSYYKVPALRMCLDLVTYISMMIIFGGFVILHEAGDTSDWLEIVFTMYIFGGILTEFREILEDPWEYMR------DQWNLLDVTSLTLLLGGAIQRMYGQVDDESSRALY-------ALSAPLAFARILFFAQILPSQGPMIQV 1247
BLAST of mRNA_L-elsbetiae_contig10300.349.1 vs. uniprot
Match: D8LH99_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH99_ECTSI) HSP 1 Score: 107 bits (268), Expect = 6.340e-21 Identity = 69/206 (33.50%), Postives = 101/206 (49.03%), Query Frame = 1 Query: 979 TSLIPGLQFNCVGLASRPDAFYEVPAVRMAFDVITYLSMLILFCFVVKLDSPTEIPGREIAFYAYMLGNMVNELGE-------------ARYVRKLRGQSQL-----------------------------------WNVVEAVLLGLVCAAFSFRMVALLSDVIQEEAFFL--AQLFFAIAAPLFFSRVLFLAQIDENLGLMVQV 1446 ++++PGLQF+ G+ +P+ FY+VP +R AF++ +YL ML+LFCF V L IP E+ FY + G + E+ E R V K G ++ WN ++ +G + AF FRM+AL ++ FFL AQ F+A++APL FSR+L L+QID LG M QV Sbjct: 982 STMLPGLQFSLAGIQGKPETFYKVPVIRFAFEIFSYLVMLVLFCFSVLLKEHDSIPWGEVTFYVFAAGLLWREILEFRDGMPARRHKPPKRQVSKNDGSTRTGSEQPLSFPRISRLGTGNRFNRMVSAFTRYVFYDTWNFLDTSTIGCILVAFIFRMIAL------DDKFFLFHAQFFYALSAPLLFSRLLVLSQIDATLGPMTQV 1181
BLAST of mRNA_L-elsbetiae_contig10300.349.1 vs. uniprot
Match: A0A6H5JTT3_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT3_9PHAE) HSP 1 Score: 95.5 bits (236), Expect = 4.900e-17 Identity = 63/194 (32.47%), Postives = 91/194 (46.91%), Query Frame = 1 Query: 982 SLIPGLQFNCVGLASRPDAFYEVPAVRMAFDVITYLSMLILFCFVVKLDSPTEIPGREIAFYAYMLGNMVNELGE------ARYVRKLRGQS---------------------------------QLWNVVEAVLLGLVCAAFSFRMVALLSDVIQEEAFFLAQLFFAIAAPLFFSRVLFLAQIDENLGLMVQV 1446 +++PGLQF+ G+ +P+ F++VP +R ++ +YL ML+LFC V L P IP E+ FY + G + E+ E R R RG WN ++ + + AF FRM+A E F AQ F+A++APL FSR+L L+QID LG M QV Sbjct: 225 TILPGLQFSLAGILGKPETFFKVPVIRFVYESFSYLVMLVLFCSSVLLKEPDFIPRDEVIFYIFAAGLLWREVLEFLDGVPTRRHRISRGLGPEVGGRVKPGISHLGAGSNFNRMVSAFTRYVFYDTWNFMDMSTICCILVAFIFRMIARFDS---EFDLFYAQFFYALSAPLLFSRLLVLSQIDATLGPMTQV 415
BLAST of mRNA_L-elsbetiae_contig10300.349.1 vs. uniprot
Match: D8LH97_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH97_ECTSI) HSP 1 Score: 95.5 bits (236), Expect = 5.450e-17 Identity = 60/194 (30.93%), Postives = 94/194 (48.45%), Query Frame = 1 Query: 982 SLIPGLQFNCVGLASRPDAFYEVPAVRMAFDVITYLSMLILFCFVVKLDSPTEIPGREIAFYAYMLGNMVNELGE----------------------------------ARYVRKLRGQSQL-----WNVVEAVLLGLVCAAFSFRMVALLSDVIQEEAFFLAQLFFAIAAPLFFSRVLFLAQIDENLGLMVQV 1446 +++PGLQF+ G+ +P+ F++VP +R +++ +YL ML+LFC V L P IP E+ FY + G + E+ E + + R + ++ WN ++ + + AF FRM+A E F AQ F+A++APL FSR+L L+QID LG M QV Sbjct: 857 TILPGLQFSLAGILGKPETFFKVPVIRFVYEIFSYLVMLVLFCSSVLLKEPDFIPRDEVIFYIFAAGLLWREVLEFLDGVPTRRHRTSGGPRTEEGGRVEPGISHLGAGSNFNRMVSAFTRYVFYDTWNFMDTSTICCIFVAFIFRMIARFDS---EFDLFYAQFFYALSAPLLFSRLLVLSQIDATLGPMTQV 1047
BLAST of mRNA_L-elsbetiae_contig10300.349.1 vs. uniprot
Match: A0A6H5KCQ6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCQ6_9PHAE) HSP 1 Score: 87.8 bits (216), Expect = 1.330e-14 Identity = 119/461 (25.81%), Postives = 195/461 (42.30%), Query Frame = 1 Query: 271 DEARRQRTAVDYAAAY-GRLDTLSCLMAYGCEISDQTVTTLL------SGDLAV---GAAAFNRCIWKGITTAR---NPLIPAHNVLRAVGRAADRDAKH-------RQFLLRMQSDVDELVQEMLQQLPPNMAGFAENHMDTGQGFEAVQWLLEPEMAGKRIPSFTG---PLAR----------ALECRRLDFFSSNIVLAYVSRKFSRGLPGIFSGASWKMPDMHNRDTKRFVLGLPY-----GAAPDNIVGAVRMRLLVPFELIQGSALRR-------TSLIPG---LQFNCVGLASRPDAFYEVPAVRMAFDVITYLSMLILFCF-VVKLDSPTEIPGREIAFYAYMLGNM-------VNELGEARYVRKLRGQSQLWNVVEAVLLGLVCAAFSFRMVALLSD----------------VIQEEAFFLAQLFFAIAAPLFFSRVLFLAQ--IDENLG 1431 DE+ Q TA+D AA +L + CL+A G + + V LL G +AV G AA C + + NPLIP N+ A+ A + +H R LL+M++D++ LV +L+ LP + GF + G A +P++ K P+ T P+++ A+E + + + ++R + G A+ + D+ + ++ G P + G + E + A++ T L+ L+F G+A + AF+ VPA+R+A DV+ Y ++ +F VV L I ++ + Y++G + V+E+ EA +R WNVVEA L + AF FRM A + D V + +LAQ F A +AP +VLFL Q + +LG Sbjct: 16 DESEAQLTALDLAARPPAKLGVIKCLLACGAIPTARVVQRLLRTCSEDGGAVAVSGSGLAAVRECFLGAMIASEWAVNPLIPGLNLYTAINAARRQVGRHVKACGAMRNNLLQMKNDINALVLSVLRHLPDTVEGF-DRFSTPAAGNAAGTGAAKPKLGKKTNPTLTPAKLPVSKVSTFEEDHDGAVEEGNATAATKLNLTSTIARGVTAASSGRLEAAAADLDDVPASEVGTSLVQEMLEPELAGLQPRDCAGPLAQARRACGETSKSFAMQSRHVDFIYTPLVVDYLRLKFILAGVAGKTAAFFGVPAMRLALDVLVYTGVVSVFVLKVVVLRDVGRITAWDVLWLVYLVGAIWKQVWMVVHEVQEAGSLRVHLFNP--WNVVEATKLASLSTAFFFRMHAWVCDGHGEYFCGQLSTGSGSVNELNEVYLAQYFQAASAPFVLGKVLFLTQARVHSSLG 473
BLAST of mRNA_L-elsbetiae_contig10300.349.1 vs. uniprot
Match: D8LHA0_ECTSI (Transient Receptor Potential Channel. Partial sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA0_ECTSI) HSP 1 Score: 77.4 bits (189), Expect = 3.490e-11 Identity = 51/158 (32.28%), Postives = 75/158 (47.47%), Query Frame = 1 Query: 979 TSLIPGLQFNCVGLASRPDAFYEVPAVRMAFDVITYLSMLILFCFVVKLDSPTEIPGREIAFYAYMLGNMVNELGEARYVRKLRGQSQLWNVVEAVLLGLVCAAFSFRMVALLSDVIQEEAFFL--AQLFFAIAAPLFFSRVLFLAQIDENLGLMVQV 1446 ++++PGLQF+ G+ +P+ FY+VPA+R F++ TYL + FY WN ++ +G + F FRM+AL ++ FFL AQ F+A +APL FSR+L L+QID LG M QV Sbjct: 1141 STILPGLQFSLAGVLGKPETFYQVPAIRFVFEIFTYLYV----------------------FY------------------------DTWNFLDTSTIGCLLVTFVFRMIAL------DDDFFLFHAQFFYAASAPLLFSRLLVLSQIDATLGPMTQV 1246
BLAST of mRNA_L-elsbetiae_contig10300.349.1 vs. uniprot
Match: A0A6H5JCX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX0_9PHAE) HSP 1 Score: 69.7 bits (169), Expect = 6.250e-9 Identity = 67/230 (29.13%), Postives = 101/230 (43.91%), Query Frame = 1 Query: 550 MQSDVDELVQEMLQQLPPNMAGFAENHMDTGQGFEAVQWLLEPEMAGKRIPS--FTGPLARALECRRLD---FFSSNIVLAYVSRKFSRGLPGI---------------FSGASWKMPDM---HNRDTKRFVLGLPYGAAPDNIV-GAVRMRLLVPFELIQGSALRRTSL--IPGLQFNCVGLASRPDAFYEVPAVRMAFDVITYLSMLILFCFVVKLDSPTEIPGREIA 1161 +Q V L+ E+L++LP + GF G +L PE K S F PLA L + F S+ +++ Y+SRKF+ GLP + SG+ M + D + G D +V ++ P L+QG+ R SL +PG QF G ++P+ +Y +PAVRM DV+ YL ++I +V DS + G IA Sbjct: 91 IQGHVHALLLEILERLPQTVNGF-------NGGMADCSAVLGPEFDSKTGESTGFKPPLALLLLANSIQTETFCSTPLIMDYLSRKFTHGLPDVGDKDGVLRNGTEHDVLSGSGPGMMSLVIGGGDDEELDERGYHEFRHKDLLVKNGLKASFESPRALLQGANDRLASLTFLPGAQFAIAGFLAKPNNYYRIPAVRMVLDVVVYLLVIIALSILVFRDSGSLTRGEGIA 313 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10300.349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig10300.349.1 >prot_L-elsbetiae_contig10300.349.1 ID=prot_L-elsbetiae_contig10300.349.1|Name=mRNA_L-elsbetiae_contig10300.349.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=491bp QVAEQLAATAKYGWTPLHAAARGNAEAMGAVMNSLVNYMEADELKEQLSQback to top mRNA from alignment at L-elsbetiae_contig10300:178..6471- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig10300.349.1 ID=mRNA_L-elsbetiae_contig10300.349.1|Name=mRNA_L-elsbetiae_contig10300.349.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6294bp|location=Sequence derived from alignment at L-elsbetiae_contig10300:178..6471- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig10300:178..6471- >mRNA_L-elsbetiae_contig10300.349.1 ID=mRNA_L-elsbetiae_contig10300.349.1|Name=mRNA_L-elsbetiae_contig10300.349.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2946bp|location=Sequence derived from alignment at L-elsbetiae_contig10300:178..6471- (Laminarionema elsbetiae ELsaHSoW15)back to top |