mRNA_L-elsbetiae_contig10298.342.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10298.342.1
Unique NamemRNA_L-elsbetiae_contig10298.342.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10298.342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10298contigL-elsbetiae_contig10298:2350..5888 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size481
Cds size480
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10298.342.1prot_L-elsbetiae_contig10298.342.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10298 2350..5888 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815258.890441-CDS-L-elsbetiae_contig10298:2349..24731622815258.890441-CDS-L-elsbetiae_contig10298:2349..2473Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10298 2350..2473 -
1691682801.378922-CDS-L-elsbetiae_contig10298:2349..24731691682801.378922-CDS-L-elsbetiae_contig10298:2349..2473Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10298 2350..2473 -
1622815258.902003-CDS-L-elsbetiae_contig10298:5391..55081622815258.902003-CDS-L-elsbetiae_contig10298:5391..5508Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10298 5392..5508 -
1691682801.391347-CDS-L-elsbetiae_contig10298:5391..55081691682801.391347-CDS-L-elsbetiae_contig10298:5391..5508Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10298 5392..5508 -
1622815258.9121177-CDS-L-elsbetiae_contig10298:5649..58881622815258.9121177-CDS-L-elsbetiae_contig10298:5649..5888Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10298 5650..5888 -
1691682801.4036472-CDS-L-elsbetiae_contig10298:5649..58881691682801.4036472-CDS-L-elsbetiae_contig10298:5649..5888Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10298 5650..5888 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10298.342.1

>prot_L-elsbetiae_contig10298.342.1 ID=prot_L-elsbetiae_contig10298.342.1|Name=mRNA_L-elsbetiae_contig10298.342.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=160bp
YEVQTLAIVSTGLSRSAARDSGPPRSALVHMYSIVLHSDDRPPFASVAEC
LSRYALARRPKKASACLALLHGPGGHVAEGLDFEPSRYQTVSQPLVSVRD
LQEPFDPPFKENSWYTNQRYHARKLLLGKNKSGAGKATKMDYILVDSNVA
SPVIAVFCR*
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mRNA from alignment at L-elsbetiae_contig10298:2350..5888-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10298.342.1 ID=mRNA_L-elsbetiae_contig10298.342.1|Name=mRNA_L-elsbetiae_contig10298.342.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3539bp|location=Sequence derived from alignment at L-elsbetiae_contig10298:2350..5888- (Laminarionema elsbetiae ELsaHSoW15)
TACGAAGTTCAAACACTTGCCATCGTCTCTACGGGCCTATCGCGTAGCGC
GGCCCGCGATAGCGGGCCGCCGCGAAGCGCCCTTGTACATATGTACAGCA
TTGTATTGCACTCTGATGACCGTCCCCCCTTCGCCTCTGTGGCTGAATGC
TTGTCCAGATACGCGCTAGCCCGGCGTCCCAAGAAGGCATCAGCATGTTT
AGCCCTACTTCACGGGCCTGGGGGACACGTAGCGGAAGGGTACGTGCGGA
TGCGTAGAGCTGTGATTGGTGTTGGTGCGCTCAGAGTACATAGTTTATGG
GTCTAGATAGAACCGATGCAAGAGCGCTATCTAAACATCAAATAGTCTAT
ATCGCTCTCCTTGCTTTCCTCTGACGACAGGCTCGACTTCGAGCCATCCC
GGTATCAGACCGTAAGCCAGCCCCTCGTCAGCGTTCGCGATCTCCAGGAG
CCTTTCGATCCTCCCTTCAAGGAAAACTCCTGGTACACCAACCAAAGGCA
AGAACAGAAGGGGGGTGAAAAATATAGGACGGGGAGGGTTAGCGAAAGAT
GACAAGACAAAAGGACACAGAGTGAACACCAGATGCATCGAATATATAAT
CTACACCGATTTGGTGTGCCGAGCAGGGTTTCAAATCGGATGCATGCTTC
GTGGTGAGCTTGACGTTTGGGCAGAGGTGTACCAAACCGTTGGTGTAAGT
CTATGAAGGTCAGGTCGACTACTGTGAGGATTAGACTAGAGGGTGCGAAG
AAATGAGAGGGCGCGTTCAACGAGAGACACGGACAGGGCGCTTTTGGAGG
AGGTCTTTCCATGTTTTGCCAACTGCAAAAGATGGGGAAATTTCAGACCA
AACGCCCCCGGTCACGTGACTCAAAAAAACGAGCCACCTGAATTCCAACC
TCTCCATGGCAGTTGATCTGACTTGTACCAGGTGTTTATTTGTCGTACTG
GTGAAGAGAATTGGCCGCGGGGAACGCTCCGGACCCGTCCATTAAAGCTA
CGCGAGGAGAATTCGTTTTCGTCCGCTTTTTGGCTATTTTTCCTCGCCAG
TTTATAATGGAAATAGAGAGGAGGCACGCTTTGAACTCTGATACGTTTAC
GGCGGGGACCAGAATTATTGTGAGCGAACCTAAGCTCTCATGCGTGCCGT
CATCTCGAACTGCATTGAACGCAAGCAAAATATCTATGATGTGAACCTGA
CATGATCACAACTATCTGTCGGTATCTTTACATTTAAAATTTAGGCTACA
AAGAAAAATATATTCTACGAGCGTCCAATTTATCCTCAAAGGTAGGCTAC
TAGATCTAGTCAGGATCATGATGTCTTGTTTGGCGTTGATCTCCGTTTTT
GATGTTGAGCGATGAGATCTGGATTCAAAGCGCTTCAACAAAAAGCGTTG
GTTGTTCTGTTTTTGCTTTGAAACTATACTTATAATACTTCTCTTATAGT
TGTGCTTTCGATTTGTTGTCGAGCGCACAGGTCTCGGAACGCTGTAGTCA
GAGAGATCCTGGATACGCACCAACTTTTTTTGGGGAAAACTACATACTTC
TACATAGATATATATAGACTATACGGATATATATGTATGTATCATGTTTG
TTTGTCGTACTAGTGAAGAGAATTGGCCGCGGGGAAACGCTCCGGACCCG
TCCATTAAAGCTACGCGAGGAGAATTCGTTTTCGTCCGCTTTTTGGCTAT
TTTTCCTCGCCAGTTTATAATCCAAATAGAGAGGAGGCACGCTATGAGCT
CTGATACGTTTACGGCGGGGACCAGAATTATTGTGAGCGAACCTAAGCTC
TCATGCGTGCCGCCATCTCGAACTGCATTGAACGCAAGCAAAACATCGTT
GATGTGAACCTGACATGATCACAACTATCTGTCGGTATCTTTACATTTAA
AATCTAGTCTACAAAGAAAAATATATTTTACGAGCAAGCGTCCAATTTAT
CCTCAAAGGTAGGCTACTAGATCTAGTCAGGATCGTGATGTCTTGTTCGG
CGTTGATCTCCGTTTTTGATGTTGAGCGATGAGATCTGGATTCAAAGCGC
TTCAACAAAAAGCGTTGGTTGTTCTGTTTTTGCTTTGAAGCTATATAATG
CTTCTCTTATAGATGTGCTTTCGATTTGTTGTCGAGCGCACAGGTCTCGG
AACGCTGTAGTCAGAGAGATCCTGGATACGCACCAACTTTTTTGGGGAAA
ACTACATACATAGATATATATACTATACGGATACAAATATGTATGTACCA
TGTTTGTTTGTCGTACTGGTGAAGAGAATTGGCCGCGGGGAAACGCTCCG
GACCCGTCCATTAAAGCTACGCGAGGAGAATTCGTTTTCGTCCGCTTTTT
GGCTATTTTTCCTCCCCAGTTTATAATGCAAATAGAGAGGAGGCACGCTA
TGAACTCTGATACGTTTACGGCGGGGACCAGAATTATTGTGAGCGAACCT
AAGCTCTCATGCGTGCCGTCATCTCGAACTGCATTGAACGCAAGCAAAAT
ATCTATGATGGGAACCTGACATGATCACATCTATCTGTTGTGTGTGTGTG
TGTGTGTGTGTCCTTCCCATTTATTTTGGCGACAGTCCCCCCAAATGGAG
ACGTGTACTACACCTTGCGGTGTACTTAGAGGTAATATCGTTACATTTAG
AACCTCTCCGATCTGTCTATCTATCCAGTACCTCCACGAGTCCGTAATAC
TCCAACACTGACTCGATCGATTCCCGTGATCACGGGATAATCTACCCTAA
CAAGAGTAATGATATTGAAAATGAGAAAACAAATACTCGTAGAAGTATAA
TGAACCCGGGGGGTTCGCCAAGCACAAAATCAAAATATCATATCTTATCA
AGTCTATGTACACAGCAATATTCTGCTGCAGGTTAACCAGATTGAGCTAA
GTGAACAACCAACAACAATAAAACAACATTCAGTAGCGCGCTGTTTCCCA
TACGTTCGGGCCGCACCAAGACGACATTAGTAGACGGACTTCATCAACAC
ACGATGACCTAGTTTTCAACTCCCAGCACCCTCACGAGGCTATGCCTATT
ATCGCTTGTAAACACAGGCTTGTATATCTGCACCAGCATCAACCATTTTG
CTAGGGAACGATAACCCGACTCTGGTAATTTATCGCCAAGGCTTTCTGTG
CGCATTGCCCGCAAACAATATCGTCTTGAGAGAAGGCAAAGCAATGACGC
TAATATCAGATCAGTAGCAACAGCAGCAGCAGCAGCAGCAGCCGTACAGC
AGCAACAGCGGTCACACCCACGGCAACAACAGCAACGACGACGTCGAAAA
CAGCAACAGCGTATTTAGAGTTGGATGGTCGGTGACGTGGCTCTTAGCTC
CTCACTGACTCTTGCTAGCTCTGCTCTGCTCGCGTGTTATCCCTCTCACA
ACTTTCGCGCGGCAGGTATCACGCAAGGAAACTATTGTTGGGGAAGAACA
AATCTGGCGCTGGGAAGGCAACAAAGATGGACTACATCCTTGTGGACTCG
AACGTCGCCAGTCCGGTCATCGCCGTGTTCTGCAGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10298:2350..5888-

>mRNA_L-elsbetiae_contig10298.342.1 ID=mRNA_L-elsbetiae_contig10298.342.1|Name=mRNA_L-elsbetiae_contig10298.342.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=960bp|location=Sequence derived from alignment at L-elsbetiae_contig10298:2350..5888- (Laminarionema elsbetiae ELsaHSoW15)
TACGAAGTTCAAACACTTGCCATCGTCTCTACGGGCCTATCGCGTAGCGC
GGCCCGCGATAGCGGGCCGCCGCGAAGCGCCCTTGTACATATGTACAGCA
TTGTATTGCACTCTGATGACCGTCCCCCCTTCGCCTCTGTGGCTGAATGC
TTGTCCAGATACGCGCTAGCCCGGCGTCCCAAGAAGGCATCAGCATGTTT
AGCCCTACTTCACGGGCCTGGGGGACACGTAGCGGAAGGTACGAAGTTCA
AACACTTGCCATCGTCTCTACGGGCCTATCGCGTAGCGCGGCCCGCGATA
GCGGGCCGCCGCGAAGCGCCCTTGTACATATGTACAGCATTGTATTGCAC
TCTGATGACCGTCCCCCCTTCGCCTCTGTGGCTGAATGCTTGTCCAGATA
CGCGCTAGCCCGGCGTCCCAAGAAGGCATCAGCATGTTTAGCCCTACTTC
ACGGGCCTGGGGGACACGTAGCGGAAGGGCTCGACTTCGAGCCATCCCGG
TATCAGACCGTAAGCCAGCCCCTCGTCAGCGTTCGCGATCTCCAGGAGCC
TTTCGATCCTCCCTTCAAGGAAAACTCCTGGTACACCAACCAAAGGCTCG
ACTTCGAGCCATCCCGGTATCAGACCGTAAGCCAGCCCCTCGTCAGCGTT
CGCGATCTCCAGGAGCCTTTCGATCCTCCCTTCAAGGAAAACTCCTGGTA
CACCAACCAAAGGTATCACGCAAGGAAACTATTGTTGGGGAAGAACAAAT
CTGGCGCTGGGAAGGCAACAAAGATGGACTACATCCTTGTGGACTCGAAC
GTCGCCAGTCCGGTCATCGCCGTGTTCTGCAGGTGAGTATCACGCAAGGA
AACTATTGTTGGGGAAGAACAAATCTGGCGCTGGGAAGGCAACAAAGATG
GACTACATCCTTGTGGACTCGAACGTCGCCAGTCCGGTCATCGCCGTGTT
CTGCAGGTGA
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