mRNA_L-elsbetiae_contig10297.340.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10297.340.1
Unique NamemRNA_L-elsbetiae_contig10297.340.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10297.340.1 vs. uniprot
Match: A0A4S8KW60_DENBC (3'-5' exonuclease domain-containing protein n=1 Tax=Dendrothele bispora (strain CBS 962.96) TaxID=1314807 RepID=A0A4S8KW60_DENBC)

HSP 1 Score: 69.3 bits (168), Expect = 1.460e-10
Identity = 41/146 (28.08%), Postives = 71/146 (48.63%), Query Frame = 1 
Query:   88 HPGVLKRLPRDLLELFPAVILRKSAVDKKLITRVEQTLVNPIGLKTLANNVRENHMRHYLWLQLRYYARMGRRRRHGQSSAVPAENELMTKPPRFSRFDDQAGYNGRPPSASVLQSAFVAVMEGMEHWYHRQQQLVDGRNLGLDDS 525
            HP +LK+LP DL + FPA +  +S +DK L+  +   + + +      + +RE H+R +  L+LRY   +  ++++ +       N   TK   FS FDD+  Y G  PS   + + ++  ME +     +    + G  L  D S
Sbjct:   26 HPDILKQLPPDLADEFPAFLTHRSGIDKGLLALIRAGVAHRVSSNAWEDILRELHLREHDILELRYLHSIQDQQKYNEKW-----NIAQTKYIPFSAFDDRTQYAGHAPSKRYINNVYMDFMESIRSCLDQCMSALTGHILQWDHS 166
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10297.340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A4S8KW60_DENBC1.460e-1028.083'-5' exonuclease domain-containing protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10297contigL-elsbetiae_contig10297:1192..1918 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size526
Cds size525
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815258.6947212-CDS-L-elsbetiae_contig10297:1191..14721622815258.6947212-CDS-L-elsbetiae_contig10297:1191..1472Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10297 1192..1472 +
1691682801.2312827-CDS-L-elsbetiae_contig10297:1191..14721691682801.2312827-CDS-L-elsbetiae_contig10297:1191..1472Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10297 1192..1472 +
1622815258.706861-CDS-L-elsbetiae_contig10297:1673..19171622815258.706861-CDS-L-elsbetiae_contig10297:1673..1917Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10297 1674..1917 +
1691682801.2400177-CDS-L-elsbetiae_contig10297:1673..19171691682801.2400177-CDS-L-elsbetiae_contig10297:1673..1917Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10297 1674..1917 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10297.340.1prot_L-elsbetiae_contig10297.340.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10297 1192..1917 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10297.340.1

>prot_L-elsbetiae_contig10297.340.1 ID=prot_L-elsbetiae_contig10297.340.1|Name=mRNA_L-elsbetiae_contig10297.340.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=175bp
NSSSKGKGRAGSRGAGSNTGYTGYKFAPWHPGVLKRLPRDLLELFPAVIL
RKSAVDKKLITRVEQTLVNPIGLKTLANNVRENHMRHYLWLQLRYYARMG
RRRRHGQSSAVPAENELMTKPPRFSRFDDQAGYNGRPPSASVLQSAFVAV
MEGMEHWYHRQQQLVDGRNLGLDDS
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mRNA from alignment at L-elsbetiae_contig10297:1192..1918+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10297.340.1 ID=mRNA_L-elsbetiae_contig10297.340.1|Name=mRNA_L-elsbetiae_contig10297.340.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=727bp|location=Sequence derived from alignment at L-elsbetiae_contig10297:1192..1918+ (Laminarionema elsbetiae ELsaHSoW15)
AATTCCTCTTCTAAGGGTAAAGGTAGAGCAGGCAGCCGTGGAGCGGGTAG
CAACACCGGCTACACCGGCTACAAGTTCGCGCCTTGGCATCCAGGCGTGC
TCAAGCGGCTTCCGCGTGACCTGCTGGAGTTGTTCCCTGCTGTCATCTTG
CGCAAGTCAGCTGTCGACAAAAAGCTCATCACTCGCGTCGAACAGACGCT
TGTGAACCCGATCGGCTTGAAGACCCTAGCAAACAACGTGCGGGAGAACC
ACATGAGGCACTACTTGTGGTTGCAGCTCCGGTGAGTGCCGTCAGTACAC
CGCGCACTGACGTAGTTTTTTGTTTTTTTCAGTGGATGATTTGCTTTTGC
CTCAACGTGTGCTTACGGTGTGTCAGTGGCCCTCGAAAAACGTGCAGTCC
ATAGCAACGCCAATGTGCTGTGCTGTGTGTGTGCGTGTGTGTGCGTGTGT
GTGTGTTTATTGCGCGTACGACATCGGTACAGATACTACGCGCGGATGGG
TAGGCGGAGAAGGCATGGTCAGTCATCAGCGGTGCCGGCAGAGAACGAGC
TGATGACCAAGCCCCCTCGCTTCAGTCGCTTCGACGATCAAGCTGGTTAC
AATGGCCGTCCACCCAGCGCCTCGGTTCTCCAGTCCGCGTTTGTCGCTGT
GATGGAGGGCATGGAGCACTGGTACCATCGGCAGCAGCAGTTGGTTGACG
GCAGGAATCTTGGGTTGGATGACTCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10297:1192..1918+

>mRNA_L-elsbetiae_contig10297.340.1 ID=mRNA_L-elsbetiae_contig10297.340.1|Name=mRNA_L-elsbetiae_contig10297.340.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1050bp|location=Sequence derived from alignment at L-elsbetiae_contig10297:1192..1918+ (Laminarionema elsbetiae ELsaHSoW15)
AATTCCTCTTCTAAGGGTAAAGGTAGAGCAGGCAGCCGTGGAGCGGGTAG
CAACACCGGCTACACCGGCTACAAGTTCGCGCCTTGGCATCCAGGCGTGC
TCAAGCGGCTTCCGCGTGACCTGCTGGAGTTGTTCCCTGCTGTCATCTTG
CGCAAGTCAGCTGTCGACAAAAAGCTCATCACTCGCGTCGAACAGACGCT
TGTGAACCCGATCGGCTTGAAGACCCTAGCAAACAACGTGCGGGAGAACC
ACATGAGGCACTACTTGTGGTTGCAGCTCCGAATTCCTCTTCTAAGGGTA
AAGGTAGAGCAGGCAGCCGTGGAGCGGGTAGCAACACCGGCTACACCGGC
TACAAGTTCGCGCCTTGGCATCCAGGCGTGCTCAAGCGGCTTCCGCGTGA
CCTGCTGGAGTTGTTCCCTGCTGTCATCTTGCGCAAGTCAGCTGTCGACA
AAAAGCTCATCACTCGCGTCGAACAGACGCTTGTGAACCCGATCGGCTTG
AAGACCCTAGCAAACAACGTGCGGGAGAACCACATGAGGCACTACTTGTG
GTTGCAGCTCCGATACTACGCGCGGATGGGTAGGCGGAGAAGGCATGGTC
AGTCATCAGCGGTGCCGGCAGAGAACGAGCTGATGACCAAGCCCCCTCGC
TTCAGTCGCTTCGACGATCAAGCTGGTTACAATGGCCGTCCACCCAGCGC
CTCGGTTCTCCAGTCCGCGTTTGTCGCTGTGATGGAGGGCATGGAGCACT
GGTACCATCGGCAGCAGCAGTTGGTTGACGGCAGGAATCTTGGGTTGGAT
GACTCGATACTACGCGCGGATGGGTAGGCGGAGAAGGCATGGTCAGTCAT
CAGCGGTGCCGGCAGAGAACGAGCTGATGACCAAGCCCCCTCGCTTCAGT
CGCTTCGACGATCAAGCTGGTTACAATGGCCGTCCACCCAGCGCCTCGGT
TCTCCAGTCCGCGTTTGTCGCTGTGATGGAGGGCATGGAGCACTGGTACC
ATCGGCAGCAGCAGTTGGTTGACGGCAGGAATCTTGGGTTGGATGACTCG
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