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Homology
BLAST of mRNA_L-elsbetiae_contig10293.337.1 vs. uniprot
Match: A0A6H5KDS9_9PHAE (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDS9_9PHAE) HSP 1 Score: 212 bits (539), Expect = 8.070e-65 Identity = 98/126 (77.78%), Postives = 111/126 (88.10%), Query Frame = 1
Query: 25 KIEEYRGSNHWKGLIPAAEEPRVWDEGFRSFLLKYGMFNHMVYDVFIKNEDGYKDEKTGLRGMSRFGDKLDEFTAKGL--DYVNAKGEKKQEYDFSKDYTIEANLVCSPDSFFTAEDNWFGFMGLS 396
K++EYRG+NHWKGLIP+A EPRVWDEGFRSFLLKYGM NH+VYDVFIK ED K E+TGLRG SRFGDKL F+ KGL +YVN KGE+KQEYDF+ DYTI ANLVCSP+SFF+AEDNWFGF+GLS
Sbjct: 59 KLDEYRGANHWKGLIPSATEPRVWDEGFRSFLLKYGMLNHVVYDVFIKGEDEVKSEETGLRGRSRFGDKLTAFSEKGLRFNYVNKKGEQKQEYDFTDDYTIVANLVCSPESFFSAEDNWFGFIGLS 184
BLAST of mRNA_L-elsbetiae_contig10293.337.1 vs. uniprot
Match: D8LGE2_ECTSI (Lipase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGE2_ECTSI) HSP 1 Score: 211 bits (537), Expect = 1.110e-64 Identity = 97/126 (76.98%), Postives = 110/126 (87.30%), Query Frame = 1
Query: 25 KIEEYRGSNHWKGLIPAAEEPRVWDEGFRSFLLKYGMFNHMVYDVFIKNEDGYKDEKTGLRGMSRFGDKLDEFTAKGL--DYVNAKGEKKQEYDFSKDYTIEANLVCSPDSFFTAEDNWFGFMGLS 396
K++EYRG+N+WKGLIP+ EPRVWDEGFRSFLLKYGMFNH+VYDVFIK ED +K E+TGLRG SRFGD F+ KGL +YVN KGEKKQEYDF+ DYTI ANLVCSPDSFF+AEDNWFGF+GLS
Sbjct: 44 KLDEYRGANNWKGLIPSVTEPRVWDEGFRSFLLKYGMFNHVVYDVFIKGEDDFKSEETGLRGRSRFGDDFTAFSEKGLKFNYVNKKGEKKQEYDFTDDYTIVANLVCSPDSFFSAEDNWFGFIGLS 169
BLAST of mRNA_L-elsbetiae_contig10293.337.1 vs. uniprot
Match: D7FQN1_ECTSI (Lipase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQN1_ECTSI) HSP 1 Score: 189 bits (481), Expect = 1.940e-56 Identity = 88/132 (66.67%), Postives = 105/132 (79.55%), Query Frame = 1
Query: 7 DPAATSKIEEYRGSNHWKGLIPAAEEPRVWDEGFRSFLLKYGMFNHMVYDVFIKNEDGYKDEKTGLRGMSRFGDKLDEFTAKGLD--YVNAKGEKKQEYDFSKDYTIEANLVCSPDSFFTAEDNWFGFMGLS 396
+PAA SK++EYRGSNHW+GL P+ EEPR WDEGFRSFLLKYGM NHMVYDVF K + G KD TGLR SRFG+ L++F A GL+ YVN GE+KQEYDFS +Y ++ANLVCSP +F EDNWFGF+ +S
Sbjct: 11 EPAALSKLDEYRGSNHWEGLHPSIEEPRTWDEGFRSFLLKYGMVNHMVYDVFQKGKHGVKDA-TGLRARSRFGENLEDFNALGLEFSYVNMAGEQKQEYDFSNEYEVQANLVCSPSAFAVKEDNWFGFIAIS 141
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 211.5 |
| Seed ortholog evalue | 2.5e-52 |
| Seed eggNOG ortholog | 2880.D8LGE2 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | phospholipase A1 activity |
| EggNOG OGs | KOG4569@1,KOG4569@2759 |
| COG Functional cat. | G |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 4 |
| Model size | 396 |
| Cds size | 396 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815258.4499295-CDS-L-elsbetiae_contig10293:322..397 | 1622815258.4499295-CDS-L-elsbetiae_contig10293:322..397 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10293 323..397 - |
| 1691682801.007012-CDS-L-elsbetiae_contig10293:322..397 | 1691682801.007012-CDS-L-elsbetiae_contig10293:322..397 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10293 323..397 - |
| 1622815258.4605262-CDS-L-elsbetiae_contig10293:981..1042 | 1622815258.4605262-CDS-L-elsbetiae_contig10293:981..1042 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10293 982..1042 - |
| 1691682801.0209093-CDS-L-elsbetiae_contig10293:981..1042 | 1691682801.0209093-CDS-L-elsbetiae_contig10293:981..1042 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10293 982..1042 - |
| 1622815258.4694436-CDS-L-elsbetiae_contig10293:1713..1848 | 1622815258.4694436-CDS-L-elsbetiae_contig10293:1713..1848 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10293 1714..1848 - |
| 1691682801.0359323-CDS-L-elsbetiae_contig10293:1713..1848 | 1691682801.0359323-CDS-L-elsbetiae_contig10293:1713..1848 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10293 1714..1848 - |
| 1622815258.4819572-CDS-L-elsbetiae_contig10293:2646..2771 | 1622815258.4819572-CDS-L-elsbetiae_contig10293:2646..2771 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10293 2647..2771 - |
| 1691682801.0480022-CDS-L-elsbetiae_contig10293:2646..2771 | 1691682801.0480022-CDS-L-elsbetiae_contig10293:2646..2771 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10293 2647..2771 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig10293.337.1 >prot_L-elsbetiae_contig10293.337.1 ID=prot_L-elsbetiae_contig10293.337.1|Name=mRNA_L-elsbetiae_contig10293.337.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=132bp
MADPAATSKIEEYRGSNHWKGLIPAAEEPRVWDEGFRSFLLKYGMFNHMV
YDVFIKNEDGYKDEKTGLRGMSRFGDKLDEFTAKGLDYVNAKGEKKQEYD
FSKDYTIEANLVCSPDSFFTAEDNWFGFMGLS back to topmRNA from alignment at L-elsbetiae_contig10293:323..2771- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig10293.337.1 ID=mRNA_L-elsbetiae_contig10293.337.1|Name=mRNA_L-elsbetiae_contig10293.337.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2449bp|location=Sequence derived from alignment at L-elsbetiae_contig10293:323..2771- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGACCCCGCAGCGACGAGCAAGATTGAGGAGTACCGCGGATCGAA
CCACTGGAAGGGGCTGATCCCCGCGGCGGAGGAGCCCAGGGTATGGGACG
AGGGCTTTCGGTCCTTCCTGCTCAAGTGAGTGTCCCAAAACGGGCGCGGT
AAAGGCCGTTTAAAACGCGAGCGTTTCTTCTCCCATTTCAACTTTCTATT
TTATTGGAAACCCAAAGATGCGGAAGCACGATCCCCCCCCTCGCTCCCCC
CGCAAGGCAATCTGGAAGATTTGGAAGGTGAAACGCGAGCGTTTGCATCC
GTCCCAGGCCTTGAGTCGATGCTTGTGTTGCCTGTCGAACACTGGCGGGG
CGGATCGCCCTGTTGTGCGGTGTGTGTGCCGTGCGAATAACTTGTTTCGC
CCACGGGGTGTGACTTGTTCCGCGCCCAGGCTGCAGCAGAGTGGCCCACC
ACGCTCGTCCACTGCCGCTGGGATCCATGCGCTCCGTTTACTCCCTCAAT
ACATTTGCTGGTGCTCGAGAGTAAACGCGCTCTTGCAGGTTGTTGCCTCG
CCCTGTGTGTGTCTACGTAGCTCCCCGTTCCGCACGGTTTTATGCAAAAA
AGTTATGATAATACCTCGTTTGAATGGCTAAAGCCCCCATATCCCATCGG
TTTACTGATTTCTACATAGCTGATTTCCCCATGCCCCCCCCCCCCCCCCC
CCCCCCCCCCTTTTTTTTTCTTTTCCTCCTCCCCGCCCGCCGCCCCTTCC
CCATCGTGGTATATCTGCTTTCTTAGCAGCACGCGTACNNNNNNNNNNTT
AATTCCTCTGTTTCATGGCTAAAGCCCCCCCTCCCCATCGGTTTTGTTTT
TTTTTCCTAGCTGTTTTCCCCCCCCCCCCCCCCCCCCCCCTATTTTCTTG
TTCTTCTGCCCTGCCGAAACGAGGTACGGTATGTTCAACCACATGGTGTA
CGACGTGTTCATCAAGAACGAAGACGGCTACAAGGACGAGAAGACCGGCC
TGCGCGGCATGTCTCGCTTCGGGGACAAGCTGGACGAGTTCACCGCCAAG
GGGCTCGAGTTCAGGCACGCACTAATTTGCATACCACCCGTTTCTCTGTT
CGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGTACTTCGAATGTACATATATGATTCAACATCCTTC
GAGCAGTTGACAACTACCAACTACCAATAGCTTAGTGGTGCTGGTTCGTC
CCCCTTGAAGAAATATGCATTGGAGTAAACCGAGGCAGCTGGTCGTGAAA
TCGTAGATATCGCACACTGTAAGTATAGTAGTTTATTTTGTATGGGAAGG
ATTTTGGTGACCGCTGGAGCTCAGCTGTATGGCCAGACAAGTCTAAGCGG
AGGCAGCCACCAAGCAGTGGGCGATTCAACGAGCGTTTTCAAATGCAGAA
GCCACGGCTGGCCCGTGTTGGCACTGCTGCCTTTGCCCTCGCTGCTACTC
TGTAGCCCGTTTCCCGTCGCCGCTGAGCAGGTAACCACTGCTTAGAGTCT
GCACCGCCACAGCCTCACGCCTGTTCGCTTATGCCACATGCGTGCCTCTC
ACATGCGTCCCAGTTGGTTCCTCTTCGCGTCAGCTCTCAACACCTCTCCT
CCCTCCTCAACTTCGCATCTCCACCCGCTTCATGTCGCTTCTGGCGCTTT
GCCGAACTAACTGCCGGTGTGGCGCACAGCTACGTGAACGCCAAGGGGGA
GAAGAAGCAGGAGTACGATTTCTCGAAAGACTACACAATCGTGAGTAGGC
GCCACAACGAGATGGATAGAGGGACCGCCTTTGGGAAGAAATTAAGTTTA
TCCGGGAAATCGACGGGGTTCCGTAACCGTAACCGTAACCGTAACCCTAA
ACCGACCCCTCGCTTAGCTGTGTCCATACTTTATCCTTCATATGATAGCT
TACGTGAAAACCCGCGTCGGCAACTGAAATAGAGAGAGAGAGGGGGTGGG
GGGGTGGGGGGGGGGAGAGAACATGAGAGAGAGATACAGAGCACTGCTTG
CGCGACATCTAAAAACGTTGTTTAAGCCGAAGACCGTTTGATTACATAGC
ACTCCTTTTTTATTTGCTCTACACGTGGACGTCAGAACTCGGCCGACCTA
ACCTCTTACATACATTTCCATGTATTTCTATGCCCTTAAGCAATGCTGCT
GGGTTGCGACTCGGTCGGCAGCAAACAGGGCCGAACACGCGCACGATTGC
GCCCATCGACAAGACCGCAACGGCAGAGCAGCGGGTTGGACACGTTTGCA
TGCAAACACACACCCAGCAGGCTATATTAACGCTTCCCCCTTCCCGTGCT
GTGTCGCCCGCCGGCCCGCTCTAGGAGGCCAACCTTGTGTGCAGCCCCGA
CTCGTTTTTCACGGCCGAGGACAACTGGTTCGGCTTCATGGGGCTCTCC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig10293:323..2771- >mRNA_L-elsbetiae_contig10293.337.1 ID=mRNA_L-elsbetiae_contig10293.337.1|Name=mRNA_L-elsbetiae_contig10293.337.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=792bp|location=Sequence derived from alignment at L-elsbetiae_contig10293:323..2771- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGACCCCGCAGCGACGAGCAAGATTGAGGAGTACCGCGGATCGAA
CCACTGGAAGGGGCTGATCCCCGCGGCGGAGGAGCCCAGGGTATGGGACG
AGGGCTTTCGGTCCTTCCTGCTCAAATGGCGGACCCCGCAGCGACGAGCA
AGATTGAGGAGTACCGCGGATCGAACCACTGGAAGGGGCTGATCCCCGCG
GCGGAGGAGCCCAGGGTATGGGACGAGGGCTTTCGGTCCTTCCTGCTCAA
GTACGGTATGTTCAACCACATGGTGTACGACGTGTTCATCAAGAACGAAG
ACGGCTACAAGGACGAGAAGACCGGCCTGCGCGGCATGTCTCGCTTCGGG
GACAAGCTGGACGAGTTCACCGCCAAGGGGCTCGAGTACGGTATGTTCAA
CCACATGGTGTACGACGTGTTCATCAAGAACGAAGACGGCTACAAGGACG
AGAAGACCGGCCTGCGCGGCATGTCTCGCTTCGGGGACAAGCTGGACGAG
TTCACCGCCAAGGGGCTCGACTACGTGAACGCCAAGGGGGAGAAGAAGCA
GGAGTACGATTTCTCGAAAGACTACACAATCCTACGTGAACGCCAAGGGG
GAGAAGAAGCAGGAGTACGATTTCTCGAAAGACTACACAATCGAGGCCAA
CCTTGTGTGCAGCCCCGACTCGTTTTTCACGGCCGAGGACAACTGGTTCG
GCTTCATGGGGCTCTCCGAGGCCAACCTTGTGTGCAGCCCCGACTCGTTT
TTCACGGCCGAGGACAACTGGTTCGGCTTCATGGGGCTCTCC back to top
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