mRNA_L-elsbetiae_contig1029.332.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1029.332.1
Unique NamemRNA_L-elsbetiae_contig1029.332.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1029.332.1 vs. uniprot
Match: D8LLL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLL5_ECTSI)

HSP 1 Score: 300 bits (769), Expect = 6.200e-98
Identity = 148/206 (71.84%), Postives = 173/206 (83.98%), Query Frame = 2
Query:  191 VELQVKPCPSPCSLPIVLGSSSSHRRAVMEQLGWQFSTAAPDIDEKAIRDPDPRKMCAEIARAKARALVQSLDKPGILITADQVCLFEE------EIREKPKNAQEANTFLASYSGQSVKTLSALCVTNLETGRVSEGVHEATVFWKDMPTSVVDGVVARGLVMSSAGGFALEDPDLRPLVDKIEGSVDSVFGLAVDLLCALVENA 790
            VELQV+P P PCSLPIVLGSSS +RR +M+ LGW+FSTA+PD+DEKAIRDPDPRKMCAEIARAKARAL + LDKP +LITADQVCLF+E      E+REKP++ +EA  FL SYS +SVKTLSALCVTNL+ GR +EGVHE+TV W+++  +VVD V+ARG VM SAGGFALE+P LR LVDKIEGSVDSV GL V+LLC LVE A
Sbjct:   23 VELQVQPRPKPCSLPIVLGSSSGYRRRIMDSLGWEFSTASPDVDEKAIRDPDPRKMCAEIARAKARALAERLDKPAVLITADQVCLFDEGHGRGEEVREKPESVEEAKAFLRSYSCRSVKTLSALCVTNLDNGRAAEGVHESTVAWREISPAVVDDVIARGNVMGSAGGFALEEPGLRSLVDKIEGSVDSVLGLPVELLCTLVERA 228          
BLAST of mRNA_L-elsbetiae_contig1029.332.1 vs. uniprot
Match: A0A7S2XZD4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZD4_9STRA)

HSP 1 Score: 186 bits (471), Expect = 1.650e-53
Identity = 95/199 (47.74%), Postives = 134/199 (67.34%), Query Frame = 2
Query:  191 VELQVKPCPSPCSLPIVLGSSSSHRRAVMEQLGWQFSTAAPDIDEKAIRDPDPRKMCAEIARAKARALVQSLD-KPGILITADQVCLFEEEIREKPKNAQEANTFLASYSGQSVKTLSALCVTNLETGRVSEGVHEATVFWKDMPTSVVDGVVARGLVMSSAGGFALEDPDLRPLVDKIEGSVDSVFGLAVDLLCALVE 784
            V  + +P P    +PI+LGSSS++R+ V++  GW FS  +PDIDEKAIR  +P ++   I+R K  AL+  +   P ILI +DQV  F+  IREKP+N  +A  +L+SYSG SV T+S + VTN  +G+ +EGV  ATV W  +   V++ VVARG +M+SAGGF +ED DL PLV  I+G+ DSV GL + L+C L++
Sbjct:    6 VRFETRPQPQT-EIPIILGSSSTNRKQVLQTAGWDFSCMSPDIDEKAIRCENPEELVILISRGKTEALLPRVTGSPSILICSDQVVSFQGTIREKPENEDQARAYLSSYSGNSVSTVSGVMVTNTGSGKSAEGVDVATVHWDTISPEVIERVVARGEIMTSAGGFRIEDVDLSPLVKNIQGTKDSVLGLPLALVCDLID 203          
BLAST of mRNA_L-elsbetiae_contig1029.332.1 vs. uniprot
Match: A0A7S3M630_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M630_9STRA)

HSP 1 Score: 167 bits (424), Expect = 9.370e-46
Identity = 87/203 (42.86%), Postives = 134/203 (66.01%), Query Frame = 2
Query:  194 ELQVKPCPSPCSLPIVLGSSSSHRRAVMEQLGWQFSTAAPDIDEKAIRDPDPRKMCAEIARAKARALV-----QSLDKPGILITADQVCLFEEEIREKPKNAQEANTFLASYSGQSVKTLSALCVTNLETGRVSEGVHEATVFWKDMPTSVVDGVVARGLVMSSAGGFALEDPDLRPLVDKIEGSVDSVFGLAVDLLCALVEN 787
            ++Q +PCP+  ++ ++ G+SS+ R+ V++ L W +     DIDEKAIR  DP +M   IA+AKA A++     Q+  +P +L+T DQ+ L    +REKP++  EA  +L+SYSG +V T+SA+ VT++ +G     +  ATV+W+D+ + VV+ VV RG VMSSAGGF +ED DL  L+  I+  VDSV G+ VDL   L+++
Sbjct:   48 QVQPQPCPAH-NMKLIFGTSSACRKNVIDALKWDYEQICADIDEKAIRHDDPMEMPVLIAKAKAEAIMEKERMQTWTEPAVLLTFDQIVLHRTNVREKPESRAEAVEYLSSYSGDAVSTVSAVVVTHIPSGIQMSSIDIATVYWRDISSEVVERVVDRGEVMSSAGGFLIEDEDLNGLIKGIDRPVDSVMGMPVDLTKRLIKD 249          
BLAST of mRNA_L-elsbetiae_contig1029.332.1 vs. uniprot
Match: A0A1G2MS12_9BACT (7-methyl-GTP pyrophosphatase n=1 Tax=Candidatus Taylorbacteria bacterium RIFCSPHIGHO2_02_FULL_46_13 TaxID=1802312 RepID=A0A1G2MS12_9BACT)

HSP 1 Score: 161 bits (407), Expect = 3.010e-44
Identity = 79/185 (42.70%), Postives = 125/185 (67.57%), Query Frame = 2
Query:  230 LPIVLGSSSSHRRAVMEQLGWQFSTAAPDIDEKAIRDPDPRKMCAEIARAKARALVQSLDKPGILITADQVCLFEEEIREKPKNAQEANTFLASYSGQSVKTLSALCVTNLETGRVSEGVHEATVFWKDMPTSVVDGVVARGLVMSSAGGFALEDPDLRPLVDKIEGSVDSVFGLAVDLLCALVE 784
            + I+LGS+S  R+ V++ +G+++   +PDIDEKAIR  DP K+   +A AKA+AL+  + +P ++IT DQV ++  +IREKP+N +EA  FL SY     +T SA+ VTN   G+ + GV  A V++K++P  ++D VV +G + ++AGG  +ED  L P +++I+G+VDS+ GL   LL  L+E
Sbjct:    1 MKIILGSASKWRKGVIDTMGFEYEVMSPDIDEKAIRLRDPDKLVLALAEAKAKALLTKVKEPALIITGDQVVVWNGQIREKPQNEKEAGYFLESYCEHPAETHSAVMVTNTANGKHAMGVDVARVYFKNIPKEIIDEVVKKGAIYTTAGGIQMEDALLAPYIERIDGTVDSLKGLPKALLTKLME 185          
BLAST of mRNA_L-elsbetiae_contig1029.332.1 vs. uniprot
Match: A0A554MGT6_9BACT (Nucleoside triphosphate pyrophosphatase n=1 Tax=Parcubacteria group bacterium Greene0714_21 TaxID=2017158 RepID=A0A554MGT6_9BACT)

HSP 1 Score: 155 bits (391), Expect = 7.390e-42
Identity = 78/185 (42.16%), Postives = 120/185 (64.86%), Query Frame = 2
Query:  230 LPIVLGSSSSHRRAVMEQLGWQFSTAAPDIDEKAIRDPDPRKMCAEIARAKARALVQSLDKPGILITADQVCLFEEEIREKPKNAQEANTFLASYSGQSVKTLSALCVTNLETGRVSEGVHEATVFWKDMPTSVVDGVVARGLVMSSAGGFALEDPDLRPLVDKIEGSVDSVFGLAVDLLCALVE 784
            + I+LGS+S  R+ V+E+ G++F   A DIDEKAIR  DP+++   +A+AKA  L+  + +P +LITADQV ++  +I EKP+NA+EA  FL  Y+    + ++A  VTN ETG+        TV++K  P  V++ ++  G + S AG F+LEDP + P VD IEG++DS+ GL  +L   L++
Sbjct:    1 MKIILGSASKQRKRVLERAGYRFEVMAADIDEKAIRLDDPKELTMALAKAKAEVLLPQIKEPALLITADQVVVWNGQILEKPENAEEARQFLRGYAQYPAQPVNATVVTNTETGKQIGENDINTVYFKPFPDEVIEQLIHEGNIFSQAGAFSLEDPLVAPYVDHIEGTLDSIEGLPFELTQRLLK 185          
BLAST of mRNA_L-elsbetiae_contig1029.332.1 vs. uniprot
Match: A0A0G1WSY9_9BACT (Nucleoside triphosphate pyrophosphatase n=1 Tax=Parcubacteria group bacterium GW2011_GWA2_51_12 TaxID=1618856 RepID=A0A0G1WSY9_9BACT)

HSP 1 Score: 152 bits (383), Expect = 1.080e-40
Identity = 78/183 (42.62%), Postives = 118/183 (64.48%), Query Frame = 2
Query:  236 IVLGSSSSHRRAVMEQLGWQFSTAAPDIDEKAIRDPDPRKMCAEIARAKARALVQSLDKPGILITADQVCLFEEEIREKPKNAQEANTFLASYSGQSVKTLSALCVTNLETGRVSEGVHEATVFWKDMPTSVVDGVVARGLVMSSAGGFALEDPDLRPLVDKIEGSVDSVFGLAVDLLCALVE 784
            I+LGS S +R  ++++ G++F    P+IDEKAIR  DP+K+ A +ARAK  AL+  +    +LIT+DQV  FE +IREKP+   EA  FL +    + +T +A+ VTN  TG+ + G+  A VF+K +P +V++  ++ G   S AGGFA E P L P +  +EG +DS+ GL ++L  AL+E
Sbjct:    3 IILGSQSKNRADILQEAGFEFDVLPPNIDEKAIRSSDPKKLPALLARAKTDALLPKISGEALLITSDQVVSFEGQIREKPETEAEARKFLETGHESANETYTAVEVTNTSTGKRASGLDIARVFFKKIPPAVINDFISSGEPFSHAGGFAAESPLLAPYIVGVEGEMDSILGLPMNLTRALIE 185          
BLAST of mRNA_L-elsbetiae_contig1029.332.1 vs. uniprot
Match: A0A1G2R879_9BACT (Nucleoside triphosphate pyrophosphatase n=1 Tax=Candidatus Wildermuthbacteria bacterium RIFCSPHIGHO2_02_FULL_48_16 TaxID=1802453 RepID=A0A1G2R879_9BACT)

HSP 1 Score: 152 bits (383), Expect = 1.150e-40
Identity = 75/187 (40.11%), Postives = 118/187 (63.10%), Query Frame = 2
Query:  230 LPIVLGSSSSHRRAVMEQLGWQFSTAAPDIDEKAIRDPDPRKMCAEIARAKARALVQSLDKPGILITADQVCLFEEEIREKPKNAQEANTFLASYSGQSVKTLSALCVTNLETGRVSEGVHEATVFWKDMPTSVVDGVVARGLVMSSAGGFALEDPDLRPLVDKIEGSVDSVFGLAVDLLCALVENA 790
            + I+LGS+S  R+ V+E++G+ F      IDEKAIR+ DP+K+   +A+AKA AL   + +P +LITADQV +   +I EKP+N ++A +FL  Y+    K  +++ VTN ETG    G  E T++ + +P  V++ ++  G + S AG +AL DP + P +D++EGS+DS  GL  +L   L+  A
Sbjct:    1 MKIILGSASKQRKGVLEKMGYVFEVMTAGIDEKAIREVDPKKLTMALAKAKAEALRSRIKEPALLITADQVVVCNGQILEKPENLEQARSFLRGYADYPAKPTNSILVTNTETGVQVGGSDENTIYLRPLPEDVIEQLIKEGNIFSWAGAYALIDPLIVPYIDRVEGSIDSAEGLPRELTERLLREA 187          
BLAST of mRNA_L-elsbetiae_contig1029.332.1 vs. uniprot
Match: A0A1G2C222_9BACT (Nucleoside triphosphate pyrophosphatase n=1 Tax=Candidatus Komeilibacteria bacterium RIFOXYC1_FULL_37_11 TaxID=1798555 RepID=A0A1G2C222_9BACT)

HSP 1 Score: 151 bits (381), Expect = 2.470e-40
Identity = 71/183 (38.80%), Postives = 119/183 (65.03%), Query Frame = 2
Query:  236 IVLGSSSSHRRAVMEQLGWQFSTAAPDIDEKAIRDPDPRKMCAEIARAKARALVQSLDKPGILITADQVCLFEEEIREKPKNAQEANTFLASYSGQSVKTLSALCVTNLETGRVSEGVHEATVFWKDMPTSVVDGVVARGLVMSSAGGFALEDPDLRPLVDKIEGSVDSVFGLAVDLLCALVE 784
            I+LGS+S  R+ V+E LG++F     DIDE+AIRD +P+K+ +++A AKA  L++ +  P +L+TADQV  +   IREKP++ QEA  FL SY     +T++ + VT+ ETGR  E    A +++K +P  +++ ++++G +   AGGF++ DP ++P +  IEG  +S+ GL   +   L++
Sbjct:    8 IILGSASLGRKKVLEDLGYKFDVLISDIDERAIRDSNPKKLTSKLANAKALVLLEKIKFPALLVTADQVVYWNGIIREKPQSPQEARDFLNSYEKFPAETVNTVVVTDTETGRKVEASDSAKIYFKKIPNQIIEKLISKGDIFQQAGGFSIWDPLVKPYIKNIEGEEESIIGLPTKITKKLLD 190          
BLAST of mRNA_L-elsbetiae_contig1029.332.1 vs. uniprot
Match: A0A1G2R322_9BACT (Nucleoside triphosphate pyrophosphatase n=1 Tax=Candidatus Wildermuthbacteria bacterium RIFCSPHIGHO2_02_FULL_47_12 TaxID=1802451 RepID=A0A1G2R322_9BACT)

HSP 1 Score: 150 bits (380), Expect = 2.990e-40
Identity = 75/179 (41.90%), Postives = 115/179 (64.25%), Query Frame = 2
Query:  230 LPIVLGSSSSHRRAVMEQLGWQFSTAAPDIDEKAIRDPDPRKMCAEIARAKARALVQSLDKPGILITADQVCLFEEEIREKPKNAQEANTFLASYSGQSVKTLSALCVTNLETGRVSEGVHEATVFWKDMPTSVVDGVVARGLVMSSAGGFALEDPDLRPLVDKIEGSVDSVFGLAVDL 766
            + I+LGS+S  R+ V+E+ G+ F     DIDEKAIRD DP+K+   +ARAKA AL   + +P +LITADQV L+  +I EKP++ ++A  FL  Y+    + ++A+ VTN +TG       E TV++   P  V++ ++  G + S AG F+LEDP + P ++ IEG++DS+ GL  +L
Sbjct:    1 MKIILGSASKQRKRVLERWGYSFEVMTADIDEKAIRDDDPKKLTMALARAKAEALRPKIKEPVLLITADQVVLWNGQILEKPESPEQARRFLKGYAQYPAQPVNAVVVTNTQTGVQLGENDENTVYFHKFPDDVIEQLILEGNIFSQAGAFSLEDPLITPYIEHIEGTLDSIEGLPKEL 179          
BLAST of mRNA_L-elsbetiae_contig1029.332.1 vs. uniprot
Match: A0A0K9NID8_ZOSMR (Maf family protein, putative, expressed n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9NID8_ZOSMR)

HSP 1 Score: 149 bits (375), Expect = 4.240e-39
Identity = 81/206 (39.32%), Postives = 119/206 (57.77%), Query Frame = 2
Query:  209 PCPSPCSLPIVLGSSSSHRRAVMEQLGWQFSTAAPDIDEKAIRDPDPRKMCAEIARAKARALVQSLD------------KPGILITADQVCLFEEEIREKPKNAQEANTFLASYSGQSVKTLSALCVTNLETGRVSEGVHEATVFWKDMPTSVVDGVVARGLVMSSAGGFALEDPDLRPLVDKIEGSVDSVFGLAVDLLCALVENA 790
            P  S     I+LGSSSS RR ++E++G+QFS    DIDEKAIR  +P ++   +A+AKA A+++ L             +P +LITADQV + E  IREKP + +EA  F+ SYS     T+ ++ VTNL+TG        A V++ ++P  V+D ++  G V+  AGG  +E P   P V  + G++DSV G   DL   L++ A
Sbjct:    8 PAQSSHPFKIILGSSSSSRRLILEEMGYQFSIMTADIDEKAIRMEEPEELVMTLAQAKADAILEKLKGTDGYYTENDDGQPTLLITADQVVVHEGVIREKPSSKEEARQFVKSYSNGCASTVGSVLVTNLKTGIKKGACDTAEVYFHEIPDEVIDNLIEEGTVLYVAGGLLVESPLTSPFVSAMVGTIDSVMGFPKDLAEKLIQEA 213          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1029.332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLL5_ECTSI6.200e-9871.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2XZD4_9STRA1.650e-5347.74Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3M630_9STRA9.370e-4642.86Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A1G2MS12_9BACT3.010e-4442.707-methyl-GTP pyrophosphatase n=1 Tax=Candidatus Ta... [more]
A0A554MGT6_9BACT7.390e-4242.16Nucleoside triphosphate pyrophosphatase n=1 Tax=Pa... [more]
A0A0G1WSY9_9BACT1.080e-4042.62Nucleoside triphosphate pyrophosphatase n=1 Tax=Pa... [more]
A0A1G2R879_9BACT1.150e-4040.11Nucleoside triphosphate pyrophosphatase n=1 Tax=Ca... [more]
A0A1G2C222_9BACT2.470e-4038.80Nucleoside triphosphate pyrophosphatase n=1 Tax=Ca... [more]
A0A1G2R322_9BACT2.990e-4041.90Nucleoside triphosphate pyrophosphatase n=1 Tax=Ca... [more]
A0A0K9NID8_ZOSMR4.240e-3939.32Maf family protein, putative, expressed n=1 Tax=Zo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1029contigL-elsbetiae_contig1029:10317..13025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score300.8
Seed ortholog evalue5.5e-79
Seed eggNOG ortholog2880.D8LLL5
KEGG koko:K06287
Hectar predicted targeting categoryother localisation
EggNOG free text desc.nucleoside-triphosphate diphosphatase activity
EggNOG OGsCOG0424@1,KOG1509@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Ec32 ortholog descriptionMaf-like protein
Ec32 orthologEc-04_005320.1
Exons6
Model size1208
Cds size714
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1029.332.1prot_L-elsbetiae_contig1029.332.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1029 10408..12622 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815258.0639536-UTR-L-elsbetiae_contig1029:10316..104071622815258.0639536-UTR-L-elsbetiae_contig1029:10316..10407Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1029 10317..10407 +
1691682800.6789477-UTR-L-elsbetiae_contig1029:10316..104071691682800.6789477-UTR-L-elsbetiae_contig1029:10316..10407Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1029 10317..10407 +
1622815258.138561-UTR-L-elsbetiae_contig1029:12622..130251622815258.138561-UTR-L-elsbetiae_contig1029:12622..13025Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1029 12623..13025 +
1691682800.7624593-UTR-L-elsbetiae_contig1029:12622..130251691682800.7624593-UTR-L-elsbetiae_contig1029:12622..13025Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1029 12623..13025 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815258.0737731-CDS-L-elsbetiae_contig1029:10407..104941622815258.0737731-CDS-L-elsbetiae_contig1029:10407..10494Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1029 10408..10494 +
1691682800.6917822-CDS-L-elsbetiae_contig1029:10407..104941691682800.6917822-CDS-L-elsbetiae_contig1029:10407..10494Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1029 10408..10494 +
1622815258.0841053-CDS-L-elsbetiae_contig1029:10803..109201622815258.0841053-CDS-L-elsbetiae_contig1029:10803..10920Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1029 10804..10920 +
1691682800.708338-CDS-L-elsbetiae_contig1029:10803..109201691682800.708338-CDS-L-elsbetiae_contig1029:10803..10920Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1029 10804..10920 +
1622815258.0942335-CDS-L-elsbetiae_contig1029:11148..112921622815258.0942335-CDS-L-elsbetiae_contig1029:11148..11292Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1029 11149..11292 +
1691682800.7177405-CDS-L-elsbetiae_contig1029:11148..112921691682800.7177405-CDS-L-elsbetiae_contig1029:11148..11292Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1029 11149..11292 +
1622815258.1069002-CDS-L-elsbetiae_contig1029:11526..115771622815258.1069002-CDS-L-elsbetiae_contig1029:11526..11577Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1029 11527..11577 +
1691682800.7300868-CDS-L-elsbetiae_contig1029:11526..115771691682800.7300868-CDS-L-elsbetiae_contig1029:11526..11577Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1029 11527..11577 +
1622815258.1175342-CDS-L-elsbetiae_contig1029:12043..122231622815258.1175342-CDS-L-elsbetiae_contig1029:12043..12223Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1029 12044..12223 +
1691682800.7406669-CDS-L-elsbetiae_contig1029:12043..122231691682800.7406669-CDS-L-elsbetiae_contig1029:12043..12223Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1029 12044..12223 +
1622815258.1268888-CDS-L-elsbetiae_contig1029:12487..126221622815258.1268888-CDS-L-elsbetiae_contig1029:12487..12622Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1029 12488..12622 +
1691682800.752848-CDS-L-elsbetiae_contig1029:12487..126221691682800.752848-CDS-L-elsbetiae_contig1029:12487..12622Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1029 12488..12622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1029.332.1

>prot_L-elsbetiae_contig1029.332.1 ID=prot_L-elsbetiae_contig1029.332.1|Name=mRNA_L-elsbetiae_contig1029.332.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=238bp
MDSIGSSGGGGGGSTAWKSISSSGSRRSQEYCGVELQVKPCPSPCSLPIV
LGSSSSHRRAVMEQLGWQFSTAAPDIDEKAIRDPDPRKMCAEIARAKARA
LVQSLDKPGILITADQVCLFEEEIREKPKNAQEANTFLASYSGQSVKTLS
ALCVTNLETGRVSEGVHEATVFWKDMPTSVVDGVVARGLVMSSAGGFALE
DPDLRPLVDKIEGSVDSVFGLAVDLLCALVENAAVLS*
back to top

mRNA from alignment at L-elsbetiae_contig1029:10317..13025+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1029.332.1 ID=mRNA_L-elsbetiae_contig1029.332.1|Name=mRNA_L-elsbetiae_contig1029.332.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2709bp|location=Sequence derived from alignment at L-elsbetiae_contig1029:10317..13025+ (Laminarionema elsbetiae ELsaHSoW15)
GAACAAGAACGGAGACACTGCCCTTGTAAGCCCCCATCAACTACAGCAAA GACGGTGGTAGCGTAGGGACACGTGGAATAGCGGCAACAGCATGGACAGC ATAGGTAGCAGCGGTGGCGGTGGCGGCGGCTCAACTGCGTGGAAGAGTAT TAGCAGCAGTGGCAGCCGCCGCAGTCAGGTGATTCGCTTCGCTTTTCGCT CCTTGCTTCGCTTGTCAAATCGCGCATGAAATATACTGTAGATACGATTC CCATCTTATCAGTGCCTGCAAAATTCGACGACAAGTTTGACGCCCGGGAC ACGAAGCTTGCGACCAATAACCAGTCGTTTCCCCCAACAATCTTTGCTCC CCCGTTACAACGAACAAATAACTCAAAATCAAACTCGAGCCCGCTAGTGT AACTGATGTTGTTCACATCGCACACCAATATCACAACAACAACAACAACA ACAACAACGCCGATAACGACGATGGCACCTTGGGCAGGAGTATTGCGGCG TCGAGCTACAGGTAAAGCCCTGCCCCTCGCCGTGCTCCTTGCCGATCGTG TTGGGTTCGTCATCGTCTCATCGTCGAGCGGTCATGGAACAGCTGGGCTG GCAGGTGCGATGAATTTTTTGCAACACGCGGAATGCGCGAAGGGGACGGG GGATGGGGCGCTACAACTGCATTTTGTTTATTTGTTTCAGACGTGTGACC ATTCGTCATGCAGCCTCTCCGAAAGTAACGTCCTATTCCTAAATATTGCC GCCTGCTGTGCCGCCGGGAGCACCCTAGCGACTGCACTGACACGCTGGCT ATCTTCTTGGAACACACGTGCACCGCTCGCAGTTTTCCACCGCCGCACCT GACATTGACGAGAAGGCCATTCGCGACCCTGACCCAAGGAAAATGTGCGC CGAAATCGCGCGCGCCAAGGCGAGAGCGCTGGTTCAGAGCCTCGATAAGC CGGGGATTCTCATCACGGCGGACCAGGTGCGTTGTGTTGCGGACTTTCAC CAGAGTTGCGTGAGCAATAGTGCAGCACTGGCAGCCGTATAAGGCAGAGG GCCCGACCTGAAGTACATGATGCAAGATTCTGGTCGCCGCTTGACTATCA CGGTGGAAATCGGTAGGTCCCCTCTAGTGTGGGTGCTGGCCGTTACATGA CATCAGCATCAACACTTGTGACTGCCATTCGTTTTGACGCATATACGTAT GTATATCCAGGTGTGTCTTTTCGAGGAAGAAATTAGAGAAAAGCCCAAGA ACGCCCAAGAGGTGAGGGAGCGAGCGCTCTGGAGGAAAGATCATTGGGAG GAGGGTACCTGGAACCGCGTGTCAGAACTGGGATATATATATATATAGAA GTATGGATGCCAGCGTCATTCGAAATCACAATACTTGTAGGCGCCGCACC ATCAAACCCCGACGAGTGTTTTAGCGACACAACAACTAATTCACGAGCAG TTTTCGTCAAACTCTGAGTGTGTGTAGTTGAAACAACAGCAGTGTTGGAC TACACGAACAAGTCTACTATCAGTTATTGTTGTTTCTTCACATTAAAAAC CGTTCCGATCTCTCCACGCAGTACCTCCCTATGTCCGTACACTCCAACAC TTGATGCGGTCAATTCCCGTGGTCAGTAGTTAGATAAAGGTAAACAATAG AGTCTGAGGACGCGTGCGTGTCATACCTCGTGGCCCGAAGTGAGCTCGGA CCCCCTGTGCCGGTTGTGCTGCTGCAGGCAAACACTTTTCTGGCAAGCTA TTCTGGTCAGTCGGTAAAGACGCTGAGCGCCCTCTGCGTGACAAACCTCG AGACTGGCCGTGTTTCGGAAGGGGTGCACGAGGCCACCGTGTTCTGGAAA GACATGCCGACCAGCGTGGTCGATGGCGTCGTGGCCAGGGGACTCGTCAT GTCGTCGGCAAGTATCTACATCTAGTCGGATACAGGCACATTTTGGCGAC ACCTGCCTTGGTTGGGCATCGGTCGTTTGGAACGTGGGCCTGCCGTTGGA AAGAGGCCGTGCCGTCGTGTACTCCAGGGAACATTCCATCCGTGGGCTTT GAAATGCTTGCCGTATCGTTAGCCGAACTTGATATATTACGGCCATTTGC GAATCGTGCTCACCAAGAGCTTAATTTAATGTGTTGCGGTCAACGATGCG GGCGGTTCCCGTAATAACCAGGCCGGCGGCTTTGCGCTGGAAGATCCAGA CTTACGGCCGCTCGTGGACAAGATTGAAGGCTCGGTCGACAGCGTCTTCG GCTTGGCCGTTGATCTCCTATGCGCCCTTGTCGAAAATGCCGCGGTTTTA AGTTGACGGAACCAAGTCGTGGGAAACTGCCATTTGCCACATGTATAAGA TCTACCTACATAGCAATCCCACGTGTGAGGTACTTGGAGAGAGGGCACGT TGTGTCGGGCAAAGATTAGGCGAGAAAACGGGAAAATTGAAAATTGCATG CTCGTTGAGACTTGGCGCTGGAGACTTGAATCGAAGGTGGGATTGGGTAG GATGCCTTTCGTTCGCCCACCGCTGCCGCAAGCCCGTGACTGCCTGGACA TGGGTCTATGCAACAAAGCTATCGAACCGAAGGAGTGGCCCCGACACACT GGTGTATTGCTGACAAAATGGGGCGCGGACTGGCGGTGTTGGGATGCACG TTGCCTCGACAAGCACCCAATCGTTTCAGGTCGGAAGATTATTGACGCCA TTTCAATCG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1029:10317..13025+

>mRNA_L-elsbetiae_contig1029.332.1 ID=mRNA_L-elsbetiae_contig1029.332.1|Name=mRNA_L-elsbetiae_contig1029.332.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1428bp|location=Sequence derived from alignment at L-elsbetiae_contig1029:10317..13025+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACAGCATAGGTAGCAGCGGTGGCGGTGGCGGCGGCTCAACTGCGTG
GAAGAGTATTAGCAGCAGTGGCAGCCGCCGCAGTCAGATGGACAGCATAG
GTAGCAGCGGTGGCGGTGGCGGCGGCTCAACTGCGTGGAAGAGTATTAGC
AGCAGTGGCAGCCGCCGCAGTCAGGAGTATTGCGGCGTCGAGCTACAGGT
AAAGCCCTGCCCCTCGCCGTGCTCCTTGCCGATCGTGTTGGGTTCGTCAT
CGTCTCATCGTCGAGCGGTCATGGAACAGCTGGGCTGGCAGGAGTATTGC
GGCGTCGAGCTACAGGTAAAGCCCTGCCCCTCGCCGTGCTCCTTGCCGAT
CGTGTTGGGTTCGTCATCGTCTCATCGTCGAGCGGTCATGGAACAGCTGG
GCTGGCAGTTTTCCACCGCCGCACCTGACATTGACGAGAAGGCCATTCGC
GACCCTGACCCAAGGAAAATGTGCGCCGAAATCGCGCGCGCCAAGGCGAG
AGCGCTGGTTCAGAGCCTCGATAAGCCGGGGATTCTCATCACGGCGGACC
AGTTTTCCACCGCCGCACCTGACATTGACGAGAAGGCCATTCGCGACCCT
GACCCAAGGAAAATGTGCGCCGAAATCGCGCGCGCCAAGGCGAGAGCGCT
GGTTCAGAGCCTCGATAAGCCGGGGATTCTCATCACGGCGGACCAGGTGT
GTCTTTTCGAGGAAGAAATTAGAGAAAAGCCCAAGAACGCCCAAGAGGTG
TGTCTTTTCGAGGAAGAAATTAGAGAAAAGCCCAAGAACGCCCAAGAGGC
AAACACTTTTCTGGCAAGCTATTCTGGTCAGTCGGTAAAGACGCTGAGCG
CCCTCTGCGTGACAAACCTCGAGACTGGCCGTGTTTCGGAAGGGGTGCAC
GAGGCCACCGTGTTCTGGAAAGACATGCCGACCAGCGTGGTCGATGGCGT
CGTGGCCAGGGGACTCGTCATGTCGTCGGCAAACACTTTTCTGGCAAGCT
ATTCTGGTCAGTCGGTAAAGACGCTGAGCGCCCTCTGCGTGACAAACCTC
GAGACTGGCCGTGTTTCGGAAGGGGTGCACGAGGCCACCGTGTTCTGGAA
AGACATGCCGACCAGCGTGGTCGATGGCGTCGTGGCCAGGGGACTCGTCA
TGTCGTCGGCCGGCGGCTTTGCGCTGGAAGATCCAGACTTACGGCCGCTC
GTGGACAAGATTGAAGGCTCGGTCGACAGCGTCTTCGGCTTGGCCGTTGA
TCTCCTATGCGCCCTTGTCGAAAATGCCGCGGTTTTAAGTTGAGCCGGCG
GCTTTGCGCTGGAAGATCCAGACTTACGGCCGCTCGTGGACAAGATTGAA
GGCTCGGTCGACAGCGTCTTCGGCTTGGCCGTTGATCTCCTATGCGCCCT
TGTCGAAAATGCCGCGGTTTTAAGTTGA
back to top