mRNA_L-elsbetiae_contig1029.331.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1029.331.1
Unique NamemRNA_L-elsbetiae_contig1029.331.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1029.331.1 vs. uniprot
Match: D8LLL4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLL4_ECTSI)

HSP 1 Score: 261 bits (667), Expect = 9.170e-84
Identity = 161/250 (64.40%), Postives = 175/250 (70.00%), Query Frame = 3 
Query:  195 MAEVFSSNSPCMLGKRVLSPHSHSSTLLGGQLDFSSKKRRLGQGTE-GSFDRVESDHQRQRS---PSPMRSGKRARPLSPLQPSAHFLGGDARGSSASA---------GSFSWSQQXXXRAQRAAAEDSELASLRLEVGALRAHAVEKDTGLNMAREENARLKEGMGMYQKELERLASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAGEYMKRLEQTNYALSVRVQAMGNSGPSDFMGGQRPPDVF 905
            MAEVFSSNSPCMLGKRVLSPHSH  TL+GGQLDFSSKKRRLGQG + GSFDR ESD         PSP+R+GKRARPLSPLQPSAHF  G A G +ASA         GSFS   Q   RAQR  AED ELA+LR EV  L+AHA EK++GLNMAREEN RLKEG+GM+QKELERL++                               QA EY+KRLEQTNYALSVRVQAMGNSG SDFMGGQRPPDVF
Sbjct:    1 MAEVFSSNSPCMLGKRVLSPHSHG-TLMGGQLDFSSKKRRLGQGLDQGSFDRSESDQXXXXXXXXPSPVRAGKRARPLSPLQPSAHFSSGGA-GEAASASRGSGLFGGGSFSQQHQHQQRAQRTGAEDGELAALRREVAVLQAHAAEKESGLNMAREENGRLKEGVGMFQKELERLSAENRILKRAVGIQNTKGKELEGQLHGLQQAAGQAAEYVKRLEQTNYALSVRVQAMGNSGASDFMGGQRPPDVF 248
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1029.331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLL4_ECTSI9.170e-8464.40Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1029contigL-elsbetiae_contig1029:6122..9179 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size908
Cds size714
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1029.331.1prot_L-elsbetiae_contig1029.331.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1029 6122..8985 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815257.9807951-CDS-L-elsbetiae_contig1029:6121..62861622815257.9807951-CDS-L-elsbetiae_contig1029:6121..6286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1029 6122..6286 -
1691682800.618138-CDS-L-elsbetiae_contig1029:6121..62861691682800.618138-CDS-L-elsbetiae_contig1029:6121..6286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1029 6122..6286 -
1622815257.9939961-CDS-L-elsbetiae_contig1029:6908..70851622815257.9939961-CDS-L-elsbetiae_contig1029:6908..7085Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1029 6909..7085 -
1691682800.6307352-CDS-L-elsbetiae_contig1029:6908..70851691682800.6307352-CDS-L-elsbetiae_contig1029:6908..7085Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1029 6909..7085 -
1622815258.0050933-CDS-L-elsbetiae_contig1029:8285..85181622815258.0050933-CDS-L-elsbetiae_contig1029:8285..8518Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1029 8286..8518 -
1691682800.639602-CDS-L-elsbetiae_contig1029:8285..85181691682800.639602-CDS-L-elsbetiae_contig1029:8285..8518Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1029 8286..8518 -
1622815258.0146291-CDS-L-elsbetiae_contig1029:8846..89851622815258.0146291-CDS-L-elsbetiae_contig1029:8846..8985Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1029 8847..8985 -
1691682800.648487-CDS-L-elsbetiae_contig1029:8846..89851691682800.648487-CDS-L-elsbetiae_contig1029:8846..8985Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1029 8847..8985 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815258.0263724-UTR-L-elsbetiae_contig1029:8985..91791622815258.0263724-UTR-L-elsbetiae_contig1029:8985..9179Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1029 8986..9179 -
1691682800.6694505-UTR-L-elsbetiae_contig1029:8985..91791691682800.6694505-UTR-L-elsbetiae_contig1029:8985..9179Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1029 8986..9179 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1029.331.1

>prot_L-elsbetiae_contig1029.331.1 ID=prot_L-elsbetiae_contig1029.331.1|Name=mRNA_L-elsbetiae_contig1029.331.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=238bp
MAEVFSSNSPCMLGKRVLSPHSHSSTLLGGQLDFSSKKRRLGQGTEGSFD
RVESDHQRQRSPSPMRSGKRARPLSPLQPSAHFLGGDARGSSASAGSFSW
SQQQQQRAQRAAAEDSELASLRLEVGALRAHAVEKDTGLNMAREENARLK
EGMGMYQKELERLASENRILKRAVGIQNTKGKELENQLHGLQQAAGQAGE
YMKRLEQTNYALSVRVQAMGNSGPSDFMGGQRPPDVF*
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mRNA from alignment at L-elsbetiae_contig1029:6122..9179-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1029.331.1 ID=mRNA_L-elsbetiae_contig1029.331.1|Name=mRNA_L-elsbetiae_contig1029.331.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3058bp|location=Sequence derived from alignment at L-elsbetiae_contig1029:6122..9179- (Laminarionema elsbetiae ELsaHSoW15)
CCGTGACCAACAGTTCGATCCTCGAGCGCAGCTTCCTACCGCTGTGTCAT
AAACCTTGAAACTCGAGAGCATATTAGGGCTGCTCTCTTCACCGGAAGTC
AAGGCAGAGGACAAACGTACTAAAGTCGAGCCGGTCGGTGAGCCTGGCTT
TTATTGAAGCCAGCAGCAGCAGGACGGAGGAGAAGCCAGACACAATGGCG
GAGGTCTTCAGCAGTAACTCGCCCTGCATGCTGGGGAAGCGCGTCCTCAG
CCCCCACTCGCACAGCAGCACCTTGCTCGGAGGGCAACTGGACTTTTCCT
CAAAGAAGCGACGACTCGGTCAAGGAACAGAAGGTAAGAGGTTAGAGGCT
GTGCAGTCGGTGTGGCAGAAGGCGCATCTCTCCCTGTAGGTCCACGCTCC
TCCATCCCACCTGCAGATATGAAACGCTCCCATGTCTTTTCAACACCAAA
AGCGCCTCATACCTGCTGATTTTGCCCCGAGATCAAAAGATGGCACGTTT
CCTTTTTTCCTTGCTTTTTTTCACGCCCACGCGACACAGCCACACTTGTT
TTTAGAGAGAGAAGCCTTCCCATAGAAGGCACCGTCTGTGTGTAGTTACG
CATAAACCTCACCGGCTAGCTGCCGCCCCTGTCGTCTCCCTCACTCGCAC
GCCACTACCAGGATCGTTCGACCGGGTCGAATCAGACCACCAGCGGCAGC
GATCCCCATCCCCCATGCGGTCGGGCAAGCGCGCTCGTCCGCTCTCGCCC
CTTCAGCCTTCGGCTCACTTCCTCGGAGGGGACGCACGCGGGTCCTCAGC
CTCTGCCGGTTCATTCTCCTGGTCGCAGCAGCAGCAGCAGCGAGCGCAGA
GGGCGGCAGCAGAGGACAGCGAGCTGGCATCTCTGCGGCTCGAGGTTAGT
GTTAGACGCTGCGGGGTTGCGTCAGTTTATGTAGGCCCGGTCGAGCTCCT
ATTTTGCTTTCGCGAAAGGGGCGGAAACCCGCTTCCCGCGGCGGTGGAAT
ACGCTCGACGCCTGACGCCTTACGAGGGACTACATACTTGTGCTACACGT
CGAGGTAAAAACCCAGCCGGGATGGTTTCCCAGCTAACTTTTGTGTTAAC
CTGATCGTGGCCTCACCCAGCAGAATTAGGTGGTATATTTTCGGTGTTGT
GTAAGAGGTTCTGCGTGTCGCTAATTAGTCGCTAATTAGTATGGTTGTTG
TGTGCATAAAACGCGCCGCAGTCAAAGAACGAGAGGTTGAAGAAAGACTT
GGGAAAACTGTTGATAGGTTGGTGGTTGCTATTTCTGTTTTCTCGCTACA
TATTCCTTCATATAGTGGCCCCACGCATCGCCGATACCGCGTAGATTCGG
CGGGGTTGTAGGAGCCGCAAAATTGCGATCCCCCCCTACTTCGTGTATCG
CACGTCGTTCGGAGTACGGTGGTAAATACATACGTACACGTGTAATGCCG
TCTGATCGTCTGCGTTCATACGAAACAGAGTAAACGTATGTATGCCCCCT
ATGGCACGAGGGTCGCCTTATCTAAGCACTAGCTCATGAGGGGTGTTCGA
TGTAGAAGCCTGTGGACTCGTGATGTATTTTGGGCATGTTGTATCTCACA
TAAGCTGTGTCCCGAGAATACCGGCCGGTTGTCACAAAAGTGCTGGAGCC
ATCAAAAGATCCGAAAAGACACACTACAAAAGGCAACGCAGACATCTGGA
GTATATTGTAATAGCATGTGCACGGGTACGTAAGCAGGAAATGATGCCTA
CCTGGAGCCCACGTAAATAGGAGTATGCTGGGTACAACTGTACGGCGGCA
CTAAACACACCCCTTGGTAGAGAAGAAGCTAGTTGGCACTGCAGGTAGGC
GGTGGGACAGACAGAGCAACCGTTCACGAAACTGGGCAAGAGCTGCTGTA
GGTGTGGCACGAGTTCACACCACACACCACAGACGCGTCCATCACCGTCG
TGATTTTGCGTTTGCGGCACATACTACAAGAGGGATATTTAACATGTGAG
AACCCAAACCGCAGTTCTAGTCTACCTATTTCTCAAGCTATTTCTCAAGC
CACTTTCTCTTCAACAAGAACACACGCTTCGCTTCCCCTGGCAGGTGGGA
GCCCTTCGAGCGCACGCGGTGGAGAAGGACACGGGCCTCAACATGGCTAG
GGAGGAGAACGCGCGGCTGAAGGAGGGCATGGGGATGTACCAGAAGGAGC
TGGAGCGCTTGGCCTCGGAGAACCGCATCCTCAAGCGCGCCGTCGGGATC
CAGAACACCAAGGGCAAGGAGGTGGGTGGGTGGGAGGAATATAGGTGGAA
TGGATGGTAGTAGCCGCGTGCATGCGTGGGGGTGCCGGTATGTAGCTCGG
TTGGTGTGGTGGATACGGCCTTGTGTGACGGGGGTCATATGTATTTGCTG
GTGTCGACCAGCAGCTTATCGAGATCGAAAAACCAAGGGTAGGCAGGGGG
GAATGGGTGTGTTGCAGGTGGTAGGACGTCGAGTACAGGATGGGTCGTGA
GCTGCTGTTGCAAGAGACATCCTATAGGGGTGTTTGATACTGGCGGTTTG
ATACGAGCTAGCAGCCAAGACTATGAGGAAAGAGAGAGGTAGGTTGTTTT
GCGTGTGGGGGGACGCCTGTGAAAATGCTGGACGGTTTGCGTGCGTTCCG
TGGATGCCTAGGTTTTCACCGTCGTTGTTTGCTGCTGCTTCCTTGATGCT
TCCTGGTGTCTCTTCGGTAGGGTGGAGGGAAAACAAGAAAACTGCGTCGT
TCAGATTGGGAGACAGCGCATTTTTTCTGCCCCCCTCTTTTCCTTCATCT
CCCGGATCTGCCGCCCCTGAACTGTATGTTTGGGCGTATGTTTCCCGTTG
TCCTGAATTTGTCCATTTATTCATTATTTTTTTTTCCGTACAGCTGGAGA
ACCAACTGCACGGGCTCCAGCAGGCGGCGGGGCAGGCGGGGGAGTACATG
AAGCGGCTCGAGCAGACCAACTACGCCCTGTCGGTGCGCGTCCAGGCCAT
GGGAAACTCGGGGCCCAGCGACTTCATGGGCGGCCAGCGCCCCCCTGACG
TGTTCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1029:6122..9179-

>mRNA_L-elsbetiae_contig1029.331.1 ID=mRNA_L-elsbetiae_contig1029.331.1|Name=mRNA_L-elsbetiae_contig1029.331.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1428bp|location=Sequence derived from alignment at L-elsbetiae_contig1029:6122..9179- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGAGGTCTTCAGCAGTAACTCGCCCTGCATGCTGGGGAAGCGCGT
CCTCAGCCCCCACTCGCACAGCAGCACCTTGCTCGGAGGGCAACTGGACT
TTTCCTCAAAGAAGCGACGACTCGGTCAAGGAACAGAAGATGGCGGAGGT
CTTCAGCAGTAACTCGCCCTGCATGCTGGGGAAGCGCGTCCTCAGCCCCC
ACTCGCACAGCAGCACCTTGCTCGGAGGGCAACTGGACTTTTCCTCAAAG
AAGCGACGACTCGGTCAAGGAACAGAAGGATCGTTCGACCGGGTCGAATC
AGACCACCAGCGGCAGCGATCCCCATCCCCCATGCGGTCGGGCAAGCGCG
CTCGTCCGCTCTCGCCCCTTCAGCCTTCGGCTCACTTCCTCGGAGGGGAC
GCACGCGGGTCCTCAGCCTCTGCCGGTTCATTCTCCTGGTCGCAGCAGCA
GCAGCAGCGAGCGCAGAGGGCGGCAGCAGAGGACAGCGAGCTGGCATCTC
TGCGGCTCGAGGATCGTTCGACCGGGTCGAATCAGACCACCAGCGGCAGC
GATCCCCATCCCCCATGCGGTCGGGCAAGCGCGCTCGTCCGCTCTCGCCC
CTTCAGCCTTCGGCTCACTTCCTCGGAGGGGACGCACGCGGGTCCTCAGC
CTCTGCCGGTTCATTCTCCTGGTCGCAGCAGCAGCAGCAGCGAGCGCAGA
GGGCGGCAGCAGAGGACAGCGAGCTGGCATCTCTGCGGCTCGAGGTGGGA
GCCCTTCGAGCGCACGCGGTGGAGAAGGACACGGGCCTCAACATGGCTAG
GGAGGAGAACGCGCGGCTGAAGGAGGGCATGGGGATGTACCAGAAGGAGC
TGGAGCGCTTGGCCTCGGAGAACCGCATCCTCAAGCGCGCCGTCGGGATC
CAGAACACCAAGGGCAAGGAGGTGGGAGCCCTTCGAGCGCACGCGGTGGA
GAAGGACACGGGCCTCAACATGGCTAGGGAGGAGAACGCGCGGCTGAAGG
AGGGCATGGGGATGTACCAGAAGGAGCTGGAGCGCTTGGCCTCGGAGAAC
CGCATCCTCAAGCGCGCCGTCGGGATCCAGAACACCAAGGGCAAGGAGCT
GGAGAACCAACTGCACGGGCTCCAGCAGGCGGCGGGGCAGGCGGGGGAGT
ACATGAAGCGGCTCGAGCAGACCAACTACGCCCTGTCGGTGCGCGTCCAG
GCCATGGGAAACTCGGGGCCCAGCGACTTCATGGGCGGCCAGCGCCCCCC
TGACGTGTTCTGACTGGAGAACCAACTGCACGGGCTCCAGCAGGCGGCGG
GGCAGGCGGGGGAGTACATGAAGCGGCTCGAGCAGACCAACTACGCCCTG
TCGGTGCGCGTCCAGGCCATGGGAAACTCGGGGCCCAGCGACTTCATGGG
CGGCCAGCGCCCCCCTGACGTGTTCTGA
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