mRNA_L-elsbetiae_contig10254.299.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10254.299.1
Unique NamemRNA_L-elsbetiae_contig10254.299.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10254.299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10254contigL-elsbetiae_contig10254:5490..6712 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size527
Cds size273
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10254.299.1prot_L-elsbetiae_contig10254.299.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10254 5562..6530 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815255.2458-UTR-L-elsbetiae_contig10254:5489..55611622815255.2458-UTR-L-elsbetiae_contig10254:5489..5561Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10254 5490..5561 -
1691682799.048419-UTR-L-elsbetiae_contig10254:5489..55611691682799.048419-UTR-L-elsbetiae_contig10254:5489..5561Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10254 5490..5561 -
1622815255.285437-UTR-L-elsbetiae_contig10254:6530..67121622815255.285437-UTR-L-elsbetiae_contig10254:6530..6712Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10254 6531..6712 -
1691682799.0787811-UTR-L-elsbetiae_contig10254:6530..67121691682799.0787811-UTR-L-elsbetiae_contig10254:6530..6712Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10254 6531..6712 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815255.259255-CDS-L-elsbetiae_contig10254:5561..57571622815255.259255-CDS-L-elsbetiae_contig10254:5561..5757Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10254 5562..5757 -
1691682799.0603094-CDS-L-elsbetiae_contig10254:5561..57571691682799.0603094-CDS-L-elsbetiae_contig10254:5561..5757Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10254 5562..5757 -
1622815255.274332-CDS-L-elsbetiae_contig10254:6453..65301622815255.274332-CDS-L-elsbetiae_contig10254:6453..6530Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10254 6454..6530 -
1691682799.071002-CDS-L-elsbetiae_contig10254:6453..65301691682799.071002-CDS-L-elsbetiae_contig10254:6453..6530Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10254 6454..6530 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10254.299.1

>prot_L-elsbetiae_contig10254.299.1 ID=prot_L-elsbetiae_contig10254.299.1|Name=mRNA_L-elsbetiae_contig10254.299.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=91bp
MCGARHYREDGRRGGALQGGDEESCSRAGVARTKWRKTAGGASTKFLASH
QQHQQPWCMQRGVAVQGGHERLQTAKSPPAWYCNSTVRFF*
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mRNA from alignment at L-elsbetiae_contig10254:5490..6712-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10254.299.1 ID=mRNA_L-elsbetiae_contig10254.299.1|Name=mRNA_L-elsbetiae_contig10254.299.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1223bp|location=Sequence derived from alignment at L-elsbetiae_contig10254:5490..6712- (Laminarionema elsbetiae ELsaHSoW15)
AGCCAAAGACTGGATTCCAGGTTGGGAAGGACGTTGTAGACCACAATCCC
GGGGTTGAGGACTCTCTCTGAACCTACCTGCCAACCTCGGAGGTTGTATA
GCAGTCCAACGTACCGCAACGTGTACCTCTGGCCACCTGTGAGGGCTGAC
AACTAGGCGCCCGACGACGATAATTCTACGGCATGTGTGGAGCTAGACAC
TACCGTGAGGACGGAAGACGTGGAGGTGCCTTGCAAGGTGGAGACGAAGA
AAGCTGCAGGTGATTCGAAAACAAGGATGTACCAGGTAGCTGATGTCTCG
GGGTGCTGTTGTACTCTCTGGTTGGTGAAAAACAGAGATGATAATTGAAG
GCAGACTCGGGCAACAGTGCAGTAGTGCACAACAACCGAACAGGGCATGT
AGACACCGCCGCTGCAGTGCTAAATGGCGAGCAGGTGCAGCAACAGCAGC
GCGACCAGCTTGGTAGTTTTGCCCACCTCGATCTGCCGCTCGCTACATTT
GCTTTGTGGGCGGTGGTGGAGAGCCACCCGCTGCAATGTCGCGTGCTAAA
TAAATACCGAGGAAGTGTGTTACCCTCACGTGGTGCTTTGTTTGGGGTCG
CTTCGTGGTACGTTTTTCGGTCTCTTTACCCGCGTGTGAGTCAAGCTGCC
CTGTTTTGAACTTCCGCGTTCAGGCCGCTCTTGTCCGCCGTATAGGCAGG
TTTCGCGTTTCGTCTGATCTGCGGCGGAAACTATGTCGCTGGATCGAGCA
AATATTTTGTTTTTTACAACGCAGAGAGATGTGACGCGTCACGTTTTGTC
GCATCGCCATACATATCACATGATGACCAGCATCACGTTACCCCCCGGCC
TTGTTCGTTTTTACATACGTCTCTACCGTGACCTCATCTACTGTTGCCCA
TTGTCCGGGCGTGGCTCTTGTGCGCCCCCCCACCCCCTTCTCTTGTCAAT
GCAAGCCGAGCAGGCGTAGCGAGGACGAAGTGGAGAAAGACCGCGGGGGG
GGCGAGCACGAAGTTCCTGGCATCGCACCAACAGCACCAGCAACCGTGGT
GTATGCAGCGTGGCGTGGCGGTACAGGGTGGACACGAGCGCCTGCAAACA
GCGAAATCACCGCCAGCGTGGTACTGTAATTCAACGGTCCGCTTTTTTTG
AGCGGGGTCGGCTGTCGCACACACGTTTCTTCCTTGCCATGTGGCACGAT
AGGCGTACATAGGTGTCCCGTAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10254:5490..6712-

>mRNA_L-elsbetiae_contig10254.299.1 ID=mRNA_L-elsbetiae_contig10254.299.1|Name=mRNA_L-elsbetiae_contig10254.299.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=546bp|location=Sequence derived from alignment at L-elsbetiae_contig10254:5490..6712- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGTGGAGCTAGACACTACCGTGAGGACGGAAGACGTGGAGGTGCCTT
GCAAGGTGGAGACGAAGAAAGCTGCAGATGTGTGGAGCTAGACACTACCG
TGAGGACGGAAGACGTGGAGGTGCCTTGCAAGGTGGAGACGAAGAAAGCT
GCAGCCGAGCAGGCGTAGCGAGGACGAAGTGGAGAAAGACCGCGGGGGGG
GCGAGCACGAAGTTCCTGGCATCGCACCAACAGCACCAGCAACCGTGGTG
TATGCAGCGTGGCGTGGCGGTACAGGGTGGACACGAGCGCCTGCAAACAG
CGAAATCACCGCCAGCGTGGTACTGTAATTCAACGGTCCGCTTTTTTTGA
CCGAGCAGGCGTAGCGAGGACGAAGTGGAGAAAGACCGCGGGGGGGGCGA
GCACGAAGTTCCTGGCATCGCACCAACAGCACCAGCAACCGTGGTGTATG
CAGCGTGGCGTGGCGGTACAGGGTGGACACGAGCGCCTGCAAACAGCGAA
ATCACCGCCAGCGTGGTACTGTAATTCAACGGTCCGCTTTTTTTGA
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