mRNA_L-elsbetiae_contig10254.297.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10254.297.1
Unique NamemRNA_L-elsbetiae_contig10254.297.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10254.297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10254contigL-elsbetiae_contig10254:2251..2612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size362
Cds size321
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815255.3215792-UTR-L-elsbetiae_contig10254:2250..22911622815255.3215792-UTR-L-elsbetiae_contig10254:2250..2291Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10254 2251..2291 +
1691682799.0876653-UTR-L-elsbetiae_contig10254:2250..22911691682799.0876653-UTR-L-elsbetiae_contig10254:2250..2291Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10254 2251..2291 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815255.3326917-CDS-L-elsbetiae_contig10254:2291..26121622815255.3326917-CDS-L-elsbetiae_contig10254:2291..2612Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10254 2292..2612 +
1691682799.0972414-CDS-L-elsbetiae_contig10254:2291..26121691682799.0972414-CDS-L-elsbetiae_contig10254:2291..2612Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10254 2292..2612 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10254.297.1prot_L-elsbetiae_contig10254.297.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10254 2292..2612 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10254.297.1

>prot_L-elsbetiae_contig10254.297.1 ID=prot_L-elsbetiae_contig10254.297.1|Name=mRNA_L-elsbetiae_contig10254.297.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
MEQQRWQTGVLARLPMRQTMDVQKPPHHQGYPSHIQPLAKKAHQAPGQAG
TARQRRVPHYFQAVCSPSCDLDVHLFSTLHPTPSHRAVNCAHFVVDTCLR
RRSCRSP
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mRNA from alignment at L-elsbetiae_contig10254:2251..2612+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10254.297.1 ID=mRNA_L-elsbetiae_contig10254.297.1|Name=mRNA_L-elsbetiae_contig10254.297.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=362bp|location=Sequence derived from alignment at L-elsbetiae_contig10254:2251..2612+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGCACATCAATATGATTGAAAATAAATAATCCATTAAAAATGGAGCAG
CAGCGGTGGCAGACGGGCGTACTCGCACGACTTCCAATGCGCCAAACAAT
GGATGTTCAAAAACCACCACACCACCAGGGGTATCCATCCCATATCCAAC
CTCTAGCTAAAAAAGCCCACCAGGCCCCGGGACAAGCTGGCACCGCGAGA
CAAAGGAGAGTTCCACACTACTTCCAAGCGGTTTGTAGCCCAAGCTGTGA
CCTAGACGTACATCTGTTTTCGACTCTACACCCGACACCTTCCCACCGCG
CCGTAAACTGTGCGCATTTTGTCGTCGATACTTGTCTTCGTCGTCGGAGC
TGTCGTTCTCCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10254:2251..2612+

>mRNA_L-elsbetiae_contig10254.297.1 ID=mRNA_L-elsbetiae_contig10254.297.1|Name=mRNA_L-elsbetiae_contig10254.297.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig10254:2251..2612+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGCAGCAGCGGTGGCAGACGGGCGTACTCGCACGACTTCCAATGCG
CCAAACAATGGATGTTCAAAAACCACCACACCACCAGGGGTATCCATCCC
ATATCCAACCTCTAGCTAAAAAAGCCCACCAGGCCCCGGGACAAGCTGGC
ACCGCGAGACAAAGGAGAGTTCCACACTACTTCCAAGCGGTTTGTAGCCC
AAGCTGTGACCTAGACGTACATCTGTTTTCGACTCTACACCCGACACCTT
CCCACCGCGCCGTAAACTGTGCGCATTTTGTCGTCGATACTTGTCTTCGT
CGTCGGAGCTGTCGTTCTCCTATGGAGCAGCAGCGGTGGCAGACGGGCGT
ACTCGCACGACTTCCAATGCGCCAAACAATGGATGTTCAAAAACCACCAC
ACCACCAGGGGTATCCATCCCATATCCAACCTCTAGCTAAAAAAGCCCAC
CAGGCCCCGGGACAAGCTGGCACCGCGAGACAAAGGAGAGTTCCACACTA
CTTCCAAGCGGTTTGTAGCCCAAGCTGTGACCTAGACGTACATCTGTTTT
CGACTCTACACCCGACACCTTCCCACCGCGCCGTAAACTGTGCGCATTTT
GTCGTCGATACTTGTCTTCGTCGTCGGAGCTGTCGTTCTCCT
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