mRNA_L-elsbetiae_contig10237.285.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10237.285.1
Unique NamemRNA_L-elsbetiae_contig10237.285.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10237.285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10237contigL-elsbetiae_contig10237:4162..4652 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size492
Cds size390
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815254.0263085-CDS-L-elsbetiae_contig10237:4161..45511622815254.0263085-CDS-L-elsbetiae_contig10237:4161..4551Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10237 4162..4551 +
1691682798.2079263-CDS-L-elsbetiae_contig10237:4161..45511691682798.2079263-CDS-L-elsbetiae_contig10237:4161..4551Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10237 4162..4551 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815254.0358317-UTR-L-elsbetiae_contig10237:4551..46521622815254.0358317-UTR-L-elsbetiae_contig10237:4551..4652Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10237 4552..4652 +
1691682798.2189531-UTR-L-elsbetiae_contig10237:4551..46521691682798.2189531-UTR-L-elsbetiae_contig10237:4551..4652Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10237 4552..4652 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10237.285.1prot_L-elsbetiae_contig10237.285.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10237 4162..4551 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10237.285.1

>prot_L-elsbetiae_contig10237.285.1 ID=prot_L-elsbetiae_contig10237.285.1|Name=mRNA_L-elsbetiae_contig10237.285.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
FCNGFVACFGFAFSENHVCVRVFVCVCVFCPSCLLVLGIDNTHAYVLSVS
VFQHQPDLTQAGVLEQRFFLFALPHIACRGESEGLQIRYLFYCCSAGPSS
PFVFFVCLFLGAGPSSPFVFFVYLFLGIS*
back to top

mRNA from alignment at L-elsbetiae_contig10237:4162..4652+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10237.285.1 ID=mRNA_L-elsbetiae_contig10237.285.1|Name=mRNA_L-elsbetiae_contig10237.285.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=491bp|location=Sequence derived from alignment at L-elsbetiae_contig10237:4162..4652+ (Laminarionema elsbetiae ELsaHSoW15)
TTTTGCAATGGATTTGTTGCTTGTTTTGGTTTCGCTTTTAGCGAAAACCA
TGTATGTGTGCGTGTGTTTGTGTGTGTGTGTGTGTTTTGCCCCTCGTGCC
TTCTTGTGCTTGGCATAGATAACACGCATGCATACGTACTGTCTGTGTCT
GTTTTTCAACACCAGCCTGACTTGACTCAGGCTGGTGTTCTTGAACAACG
TTTTTTCCTTTTCGCTTTGCCTCACATAGCGTGTAGAGGGGAGAGCGAAG
GGCTCCAGATTCGATATCTGTTTTATTGTTGCTCTGCTGGCCCTTCGAGT
CCATTTGTATTTTTCGTGTGCCTTTTCTTAGGTGCTGGCCCTTCGAGTCC
ATTTGTATTTTTCGTGTACCTTTTCTTAGGTATAAGTTAGCCTGTGACCA
CGGGAATTGACCGCATCAAGTGTTGGCGGTCCTTTCTTCTTCCTCTTATG
TATCCCCTCTTTTGCTCGTAAATAGATGGCATCGACGGAGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig10237:4162..4652+

>mRNA_L-elsbetiae_contig10237.285.1 ID=mRNA_L-elsbetiae_contig10237.285.1|Name=mRNA_L-elsbetiae_contig10237.285.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig10237:4162..4652+ (Laminarionema elsbetiae ELsaHSoW15)
TTTTGCAATGGATTTGTTGCTTGTTTTGGTTTCGCTTTTAGCGAAAACCA
TGTATGTGTGCGTGTGTTTGTGTGTGTGTGTGTGTTTTGCCCCTCGTGCC
TTCTTGTGCTTGGCATAGATAACACGCATGCATACGTACTGTCTGTGTCT
GTTTTTCAACACCAGCCTGACTTGACTCAGGCTGGTGTTCTTGAACAACG
TTTTTTCCTTTTCGCTTTGCCTCACATAGCGTGTAGAGGGGAGAGCGAAG
GGCTCCAGATTCGATATCTGTTTTATTGTTGCTCTGCTGGCCCTTCGAGT
CCATTTGTATTTTTCGTGTGCCTTTTCTTAGGTGCTGGCCCTTCGAGTCC
ATTTGTATTTTTCGTGTACCTTTTCTTAGGTATAAGTTAGTTTTGCAATG
GATTTGTTGCTTGTTTTGGTTTCGCTTTTAGCGAAAACCATGTATGTGTG
CGTGTGTTTGTGTGTGTGTGTGTGTTTTGCCCCTCGTGCCTTCTTGTGCT
TGGCATAGATAACACGCATGCATACGTACTGTCTGTGTCTGTTTTTCAAC
ACCAGCCTGACTTGACTCAGGCTGGTGTTCTTGAACAACGTTTTTTCCTT
TTCGCTTTGCCTCACATAGCGTGTAGAGGGGAGAGCGAAGGGCTCCAGAT
TCGATATCTGTTTTATTGTTGCTCTGCTGGCCCTTCGAGTCCATTTGTAT
TTTTCGTGTGCCTTTTCTTAGGTGCTGGCCCTTCGAGTCCATTTGTATTT
TTCGTGTACCTTTTCTTAGGTATAAGTTAG
back to top