mRNA_L-elsbetiae_contig10236.284.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10236.284.1
Unique NamemRNA_L-elsbetiae_contig10236.284.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig10236.284.1 vs. uniprot
Match: D7FTG1_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTG1_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 2.180e-31
Identity = 68/86 (79.07%), Postives = 78/86 (90.70%), Query Frame = 1 
Query: 1345 VDPLLEKRNAVDEVTRQLQDILREDALQDDGTHDYSAAFELFDVDHDGNATTDELHSIFLRLGMGNLLDEEGIAMVVDRVPRNASG 1602
            VDPL E RN +DEVTR+LQ +LREDALQDDG+ DYSAAFE+FDVDHDGNAT DELHSIF+RLGMG+LL EEGIA++VDRVPR+ SG
Sbjct:   93 VDPLFEARNKIDEVTRELQRLLREDALQDDGSLDYSAAFEIFDVDHDGNATPDELHSIFIRLGMGSLLSEEGIAVIVDRVPRDPSG 178
[Close]
BLAST of mRNA_L-elsbetiae_contig10236.284.1 vs. uniprot
Match: A0A6H5L2T5_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2T5_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.020e-20
Identity = 67/144 (46.53%), Postives = 77/144 (53.47%), Query Frame = 1 
Query: 1345 VDPLLEKRNAVDEVTRQLQDILREDALQDDGTH---DYSAAFELFDVDHDGNATTDELHSIFLR-------------------------------------------------------LGMGNLLDEEGIAMVVDRVPRNASG 1602
            VDPL E RN +DEVTR+LQ +LREDALQDDG     DYSAAFE+FD+D+DGNAT DELHSIF+R                                                       LGMGNLL EEGIA++VDRVPR+ SG
Sbjct:   93 VDPLFEARNKIDEVTRELQRLLREDALQDDGGEGSLDYSAAFEIFDMDNDGNATPDELHSIFIRCTLHLGSESHVARARPKAPLDLWWQDRGRVSAVRLALTLGVEVSSDGRSSWCSRRLGMGNLLSEEGIAVIVDRVPRDPSG 236
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10236.284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTG1_ECTSI2.180e-3179.07EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5L2T5_9PHAE1.020e-2046.53EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10236contigL-elsbetiae_contig10236:1273..4814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-21_001220.1
Exons5
Model size1602
Cds size1602
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10236.284.1prot_L-elsbetiae_contig10236.284.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10236 1273..4814 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815253.94045-CDS-L-elsbetiae_contig10236:1272..13761622815253.94045-CDS-L-elsbetiae_contig10236:1272..1376Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10236 1273..1376 +
1691682798.1583407-CDS-L-elsbetiae_contig10236:1272..13761691682798.1583407-CDS-L-elsbetiae_contig10236:1272..1376Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10236 1273..1376 +
1622815253.9511468-CDS-L-elsbetiae_contig10236:1941..20981622815253.9511468-CDS-L-elsbetiae_contig10236:1941..2098Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10236 1942..2098 +
1691682798.1713066-CDS-L-elsbetiae_contig10236:1941..20981691682798.1713066-CDS-L-elsbetiae_contig10236:1941..2098Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10236 1942..2098 +
1622815253.961911-CDS-L-elsbetiae_contig10236:2546..37201622815253.961911-CDS-L-elsbetiae_contig10236:2546..3720Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10236 2547..3720 +
1691682798.1807637-CDS-L-elsbetiae_contig10236:2546..37201691682798.1807637-CDS-L-elsbetiae_contig10236:2546..3720Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10236 2547..3720 +
1622815253.9713607-CDS-L-elsbetiae_contig10236:4220..43111622815253.9713607-CDS-L-elsbetiae_contig10236:4220..4311Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10236 4221..4311 +
1691682798.1893227-CDS-L-elsbetiae_contig10236:4220..43111691682798.1893227-CDS-L-elsbetiae_contig10236:4220..4311Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10236 4221..4311 +
1622815253.9832625-CDS-L-elsbetiae_contig10236:4738..48141622815253.9832625-CDS-L-elsbetiae_contig10236:4738..4814Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10236 4739..4814 +
1691682798.1980286-CDS-L-elsbetiae_contig10236:4738..48141691682798.1980286-CDS-L-elsbetiae_contig10236:4738..4814Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10236 4739..4814 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10236.284.1

>prot_L-elsbetiae_contig10236.284.1 ID=prot_L-elsbetiae_contig10236.284.1|Name=mRNA_L-elsbetiae_contig10236.284.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=534bp
RQLFDVAKSGDVRSLKSLLRQSRTTTVGGINFQYSAKVAEGAGINLWPWY
WCIDTRDDITRCWGAPAGIEPEAGDTLLMITLKIGMEDHVQIILDHGALN
LGIRNSSGRDAAGIAATHGRESLIPRLRARFDDQQQGPKASTLGRRRRRE
QRHIRLAKHFPRNSIYPDVPSSCYQVASKGAFGAAGAPGVILCKRIIDDE
HADEEISPPGGQQQVDSERKSSVRVGGATSHLSESCDVHPSPGETMAVAV
QTDPERVCARDATAPSTVPSKAQHTRGCQTPGALSPMPLVGSTDNARLQR
RSTAPGDMLSHSLGAWHSALPSTKSGEFGRRKLPNTWESVHNTDPFASTS
LHRKMMEQRRPEASTADENLAGSISGSAFSSELHRKGPETPPTAKVDERE
PSPCDNGGETGNPVVRGQGDFVLRQQGTPRPGGGSSADSGDDSSPPGAVD
PLLEKRNAVDEVTRQLQDILREDALQDDGTHDYSAAFELFDVDHDGNATT
DELHSIFLRLGMGNLLDEEGIAMVVDRVPRNASG
back to top

mRNA from alignment at L-elsbetiae_contig10236:1273..4814+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10236.284.1 ID=mRNA_L-elsbetiae_contig10236.284.1|Name=mRNA_L-elsbetiae_contig10236.284.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3542bp|location=Sequence derived from alignment at L-elsbetiae_contig10236:1273..4814+ (Laminarionema elsbetiae ELsaHSoW15)
CGACAACTTTTCGATGTGGCTAAATCTGGCGACGTCCGATCACTCAAATC
TCTGCTCCGGCAGAGCAGAACCACAACAGTCGGGGGCATCAACTTCCAGT
ATAGGTACACATGTCGTATTGTAGAATTGGGGCTCTTAAATTGCCACCAA
TTTCCGCAGTGCGTGGTGTGTTCACGGAAAGTCCTGATGTCATCAGCGTC
CGGCAGTCTACCAGCTGCGGGTCACCTGTTCCGTTGCTGATGAAATGCAC
ACCACGGGCGGTGCTTTATCAGTGATGGAGAGAAAAGGTGCATGGTTTCT
ATTGCAGATTTTCATTTTACATACACTATTTCTATCTATCTATCCCTTTT
CTAGACGAGGGTCCGTAGAACTCTTTGAAATACGCGCCTGGGAACCTGAA
CCCTGGCCAACCCCAACTTTAATAGTGCTTGCTTTTTTGGGGTATTTCCG
CTGGTTCTAGTGCATTCTCTTAATAATATGTTGTAATCCGGTTCCAGTAT
CAATTTGGCAAGTCTGTCACACCCGCAACAGGCGAGCTCGACCGCGAACT
CTCCACTTCGATGGGATTTTACGTGGATCGGAGAAAATATTTGTACGCTT
AATTGTGCACGCGCCGGTTGCCCTTCCTCCGTGATACTCTCCACATTCGA
TCGGGTGAATGATCCTCAGCGCTAAAGTTGCCGAGGGAGCGGGAATAAAC
CTGTGGCCATGGTATTGGTGTATCGACACACGCGACGACATCACTCGGTG
CTGGGGTGCACCTGCGGGTATAGAGCCAGAGGCAGGCGATACTCTACTCA
TGATCACTCTCAAGATTGGCATGGAGGTGGTTATGTACTGTAGCGACACA
TCTTCGCCTCCTTTACCGGGCACGAGAACGATGCTTTTATTCATGGGATA
GAGTCTAGACCTGATCCGGACGAGTTTAGCAAACACATATCCGCAATCGC
CTCAACTAGTGCATCCTAGACCTGTGGTTTTATTCAAGAGAGCCATGCGT
TGAGGAAGGATGTGCATAGCATAACGTATGCGCACCACCCTTTGAAAATA
CTCGCTTTCTGTTTTTTTTTTTTACTACAGTACGTGCATGCTAATGATGC
GGTGATGCTTGACGCCGTCGCTGCCATTGCTCGTTTCGTTATTTTGTCAA
GCTTTGTTTCTAGCGCCTCCGTGACACAAAGCCTGTGGTCTCCAAATCAC
TGTCGTATCTCTCCGTCCAAGGAGTTTTAAGAACGTGAGTGGCCGACCAC
TGATCTCACTCCTTCGTGCTGCAGGATCACGTCCAGATTATTCTCGATCA
TGGGGCACTCAACCTGGGGATTCGAAATTCCTCCGGTCGAGATGCGGCTG
GGATCGCCGCAACCCACGGTCGCGAATCGCTTATTCCACGCCTACGAGCG
CGTTTTGACGACCAACAGCAAGGGCCGAAAGCGAGCACGTTGGGTCGACG
GAGGCGCCGGGAACAACGACATATTCGTCTGGCCAAGCACTTCCCCAGAA
ACTCAATATACCCTGACGTACCATCCTCCTGCTACCAAGTCGCATCTAAG
GGAGCTTTTGGTGCAGCAGGCGCGCCTGGGGTGATCCTTTGTAAGCGAAT
AATCGACGACGAACATGCCGACGAAGAGATTTCACCTCCGGGTGGACAGC
AGCAGGTGGACAGTGAAAGGAAGAGCAGTGTTCGGGTTGGCGGGGCAACC
TCGCACCTCTCAGAATCGTGCGACGTGCACCCGTCGCCGGGCGAAACAAT
GGCCGTGGCGGTGCAAACTGATCCCGAGCGCGTTTGCGCGAGGGATGCCA
CCGCGCCTTCCACCGTGCCAAGCAAAGCCCAACACACTAGAGGCTGCCAA
ACCCCGGGGGCGCTCTCACCCATGCCACTTGTGGGTAGTACAGACAATGC
TCGTCTTCAACGGCGGTCAACAGCCCCGGGTGATATGTTATCTCACTCCC
TTGGCGCTTGGCATTCAGCCCTGCCATCGACCAAGTCCGGTGAATTCGGT
CGGAGGAAGCTTCCAAACACCTGGGAAAGTGTTCACAACACGGATCCTTT
CGCAAGTACATCTCTCCACAGAAAAATGATGGAGCAGAGGCGGCCTGAAG
CGAGTACCGCTGATGAGAATTTGGCAGGATCGATCTCGGGTAGTGCATTT
TCCTCCGAGCTCCACCGCAAGGGTCCTGAGACCCCACCCACCGCAAAGGT
TGACGAACGAGAACCCTCACCCTGTGACAATGGAGGCGAGACCGGAAACC
CTGTCGTACGAGGACAGGGGGACTTCGTCCTCCGGCAACAGGGCACACCG
AGACCTGGGGGCGGGAGTAGTGCAGACTCAGGTGATGACAGTTCTCCTCC
TGGGGCTGTTGATCCGCTGCTCGAGAAGAGAAACGCGGTCGATGAGGTTA
CTCGGCAGTTGCAAGACATACTGCGCGAAGATGCTCTACAGGACGACGGT
GGGTGCAACGCACACACACACGATCGCAGATGTAGATAGCACCATATCTT
GTAGCCTGCAGAGCCTTATGTCGGTCGATTGCTGCTTGGAGAGAAACGCC
CACAAAGCCCGTCGGCAAGGGATCTATGGGAAAGCATAAGTAGGATCGAA
ATAGCTTCGCCAAGCGTGACGTCGAAGATAAAAAAAACGACGGTGGAACC
AGGTGGACAAATTATTCCTCCTTAAACTTGAAACAATCGGAAACATAGGA
TCGGTGTTTTTACTGGCTGTGCTCGCATGCGGTTCAGAGTATAAATTGAC
TCTCGTCAACGGCCTCCACGATGTTTTGGTAAGCAATGGGGTTTGCGGAG
GTCCGGCAACTGCAGCAGGCCCAGGAGGGCACTCTATCGGGAAAAGAGGA
GAATAAGCAGAATCTCCCCAATTGAGTCTCGTGCAACTAGATACTGGAAA
CAAGCAGTCAGGGAGGAACACACCGCGATTTTGTTGAACCTTGGGCAGGA
ACTCACGACTATAGTGCGGCTTTCGAGCTGTTCGATGTGGACCACGACGG
GAACGCGACCACCGACGAGCTTCACTCTATTTTCTTAAGGTGAGCTTTTC
TCATCCGAAAAGGTGTATACTCTTATAACTCATAACCAACCGATGTAACC
CCTGGTATTTAGTGGCAAAGCAGCTATCGTCAGCGTAGGACTGTCACAGC
AGTGCTGACACTACTTTCAACGGTGTCCATTGAAAACAGACTAAGCCCGT
CGAACACCGGAGATCAAGGTGAACGGTTTCATGAACCACGCTGTGTGCAC
GGTTGAAAACAACGCCATTTCTCGAAACGTAGCGACATTGCGGGATTGCA
GGAAAATGATCTGATTTGGACTCTCGGGGTGTTGCACGGGTTGTGGCGTA
TCAGACTCGCCGCTGTTCTCACGAACCGTGTGTGCGCACCGAATTTACAC
ACACACGGGTGTGCCTCGATTGTGTGCCTCGAATCCGAACATCGTGACCC
AACGCGATAACCGAAGGCTTGGCATGGGGAATCTGCTGGACGAAGAAGGG
ATCGCCATGGTGGTCGACCGAGTGCCGAGGAACGCATCGGGT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig10236:1273..4814+

>mRNA_L-elsbetiae_contig10236.284.1 ID=mRNA_L-elsbetiae_contig10236.284.1|Name=mRNA_L-elsbetiae_contig10236.284.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3204bp|location=Sequence derived from alignment at L-elsbetiae_contig10236:1273..4814+ (Laminarionema elsbetiae ELsaHSoW15)
CGACAACTTTTCGATGTGGCTAAATCTGGCGACGTCCGATCACTCAAATC
TCTGCTCCGGCAGAGCAGAACCACAACAGTCGGGGGCATCAACTTCCAGT
ATAGCGACAACTTTTCGATGTGGCTAAATCTGGCGACGTCCGATCACTCA
AATCTCTGCTCCGGCAGAGCAGAACCACAACAGTCGGGGGCATCAACTTC
CAGTATAGCGCTAAAGTTGCCGAGGGAGCGGGAATAAACCTGTGGCCATG
GTATTGGTGTATCGACACACGCGACGACATCACTCGGTGCTGGGGTGCAC
CTGCGGGTATAGAGCCAGAGGCAGGCGATACTCTACTCATGATCACTCTC
AAGATTGGCATGGAGCGCTAAAGTTGCCGAGGGAGCGGGAATAAACCTGT
GGCCATGGTATTGGTGTATCGACACACGCGACGACATCACTCGGTGCTGG
GGTGCACCTGCGGGTATAGAGCCAGAGGCAGGCGATACTCTACTCATGAT
CACTCTCAAGATTGGCATGGAGGATCACGTCCAGATTATTCTCGATCATG
GGGCACTCAACCTGGGGATTCGAAATTCCTCCGGTCGAGATGCGGCTGGG
ATCGCCGCAACCCACGGTCGCGAATCGCTTATTCCACGCCTACGAGCGCG
TTTTGACGACCAACAGCAAGGGCCGAAAGCGAGCACGTTGGGTCGACGGA
GGCGCCGGGAACAACGACATATTCGTCTGGCCAAGCACTTCCCCAGAAAC
TCAATATACCCTGACGTACCATCCTCCTGCTACCAAGTCGCATCTAAGGG
AGCTTTTGGTGCAGCAGGCGCGCCTGGGGTGATCCTTTGTAAGCGAATAA
TCGACGACGAACATGCCGACGAAGAGATTTCACCTCCGGGTGGACAGCAG
CAGGTGGACAGTGAAAGGAAGAGCAGTGTTCGGGTTGGCGGGGCAACCTC
GCACCTCTCAGAATCGTGCGACGTGCACCCGTCGCCGGGCGAAACAATGG
CCGTGGCGGTGCAAACTGATCCCGAGCGCGTTTGCGCGAGGGATGCCACC
GCGCCTTCCACCGTGCCAAGCAAAGCCCAACACACTAGAGGCTGCCAAAC
CCCGGGGGCGCTCTCACCCATGCCACTTGTGGGTAGTACAGACAATGCTC
GTCTTCAACGGCGGTCAACAGCCCCGGGTGATATGTTATCTCACTCCCTT
GGCGCTTGGCATTCAGCCCTGCCATCGACCAAGTCCGGTGAATTCGGTCG
GAGGAAGCTTCCAAACACCTGGGAAAGTGTTCACAACACGGATCCTTTCG
CAAGTACATCTCTCCACAGAAAAATGATGGAGCAGAGGCGGCCTGAAGCG
AGTACCGCTGATGAGAATTTGGCAGGATCGATCTCGGGTAGTGCATTTTC
CTCCGAGCTCCACCGCAAGGGTCCTGAGACCCCACCCACCGCAAAGGTTG
ACGAACGAGAACCCTCACCCTGTGACAATGGAGGCGAGACCGGAAACCCT
GTCGTACGAGGACAGGGGGACTTCGTCCTCCGGCAACAGGGCACACCGAG
ACCTGGGGGCGGGAGTAGTGCAGACTCAGGTGATGACAGTTCTCCTCCTG
GGGCTGTTGATCCGCTGCTCGAGAAGAGAAACGCGGTCGATGAGGTTACT
CGGCAGTTGCAAGACATACTGCGCGAAGATGCTCTACAGGACGACGGATC
ACGTCCAGATTATTCTCGATCATGGGGCACTCAACCTGGGGATTCGAAAT
TCCTCCGGTCGAGATGCGGCTGGGATCGCCGCAACCCACGGTCGCGAATC
GCTTATTCCACGCCTACGAGCGCGTTTTGACGACCAACAGCAAGGGCCGA
AAGCGAGCACGTTGGGTCGACGGAGGCGCCGGGAACAACGACATATTCGT
CTGGCCAAGCACTTCCCCAGAAACTCAATATACCCTGACGTACCATCCTC
CTGCTACCAAGTCGCATCTAAGGGAGCTTTTGGTGCAGCAGGCGCGCCTG
GGGTGATCCTTTGTAAGCGAATAATCGACGACGAACATGCCGACGAAGAG
ATTTCACCTCCGGGTGGACAGCAGCAGGTGGACAGTGAAAGGAAGAGCAG
TGTTCGGGTTGGCGGGGCAACCTCGCACCTCTCAGAATCGTGCGACGTGC
ACCCGTCGCCGGGCGAAACAATGGCCGTGGCGGTGCAAACTGATCCCGAG
CGCGTTTGCGCGAGGGATGCCACCGCGCCTTCCACCGTGCCAAGCAAAGC
CCAACACACTAGAGGCTGCCAAACCCCGGGGGCGCTCTCACCCATGCCAC
TTGTGGGTAGTACAGACAATGCTCGTCTTCAACGGCGGTCAACAGCCCCG
GGTGATATGTTATCTCACTCCCTTGGCGCTTGGCATTCAGCCCTGCCATC
GACCAAGTCCGGTGAATTCGGTCGGAGGAAGCTTCCAAACACCTGGGAAA
GTGTTCACAACACGGATCCTTTCGCAAGTACATCTCTCCACAGAAAAATG
ATGGAGCAGAGGCGGCCTGAAGCGAGTACCGCTGATGAGAATTTGGCAGG
ATCGATCTCGGGTAGTGCATTTTCCTCCGAGCTCCACCGCAAGGGTCCTG
AGACCCCACCCACCGCAAAGGTTGACGAACGAGAACCCTCACCCTGTGAC
AATGGAGGCGAGACCGGAAACCCTGTCGTACGAGGACAGGGGGACTTCGT
CCTCCGGCAACAGGGCACACCGAGACCTGGGGGCGGGAGTAGTGCAGACT
CAGGTGATGACAGTTCTCCTCCTGGGGCTGTTGATCCGCTGCTCGAGAAG
AGAAACGCGGTCGATGAGGTTACTCGGCAGTTGCAAGACATACTGCGCGA
AGATGCTCTACAGGACGACGGAACTCACGACTATAGTGCGGCTTTCGAGC
TGTTCGATGTGGACCACGACGGGAACGCGACCACCGACGAGCTTCACTCT
ATTTTCTTAAGGAACTCACGACTATAGTGCGGCTTTCGAGCTGTTCGATG
TGGACCACGACGGGAACGCGACCACCGACGAGCTTCACTCTATTTTCTTA
AGGCTTGGCATGGGGAATCTGCTGGACGAAGAAGGGATCGCCATGGTGGT
CGACCGAGTGCCGAGGAACGCATCGGGTGCTTGGCATGGGGAATCTGCTG
GACGAAGAAGGGATCGCCATGGTGGTCGACCGAGTGCCGAGGAACGCATC
GGGT
back to top