mRNA_L-elsbetiae_contig10225.275.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10225.275.1
Unique NamemRNA_L-elsbetiae_contig10225.275.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig10225.275.1 vs. uniprot
Match: D7FQI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQI6_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 9.320e-28
Identity = 51/62 (82.26%), Postives = 57/62 (91.94%), Query Frame = 1
Query:    1 GDMEGEVRCSDGCIGGNMKATLSASKTILIGKAAVVTGDVTYSSLQVMDGARLQGKLTHYAA 186
            G MEGEVRCSDGCIGGNMKAT+ ASKT+LIGKAAVVTGD+ Y SLQV+DG RLQGKLTHY++
Sbjct:  137 GQMEGEVRCSDGCIGGNMKATIIASKTLLIGKAAVVTGDMVYDSLQVLDGGRLQGKLTHYSS 198          
BLAST of mRNA_L-elsbetiae_contig10225.275.1 vs. uniprot
Match: A0A6H5JYZ3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYZ3_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.230e-24
Identity = 47/62 (75.81%), Postives = 57/62 (91.94%), Query Frame = 1
Query:    1 GDMEGEVRCSDGCIGGNMKATLSASKTILIGKAAVVTGDVTYSSLQVMDGARLQGKLTHYAA 186
            G MEGEVRCS+GCIGGNMKAT+ AS+T+LIGKAAVVTGD+ Y SLQV++G R+QGKLTHY++
Sbjct:  263 GQMEGEVRCSEGCIGGNMKATIIASETLLIGKAAVVTGDMVYDSLQVLEGGRIQGKLTHYSS 324          
BLAST of mRNA_L-elsbetiae_contig10225.275.1 vs. uniprot
Match: UPI001E3BA90A (polymer-forming cytoskeletal protein n=1 Tax=Saccharospirillum sp. MSK14-1 TaxID=1897632 RepID=UPI001E3BA90A)

HSP 1 Score: 58.5 bits (140), Expect = 8.490e-9
Identity = 32/73 (43.84%), Postives = 47/73 (64.38%), Query Frame = 1
Query:    1 GDMEGEVRCSDGCIGGNMKATLSASKTILIGKAAVVTGDVTYSSLQVMDGARLQGKLTHYAAPPQKEPKPAAA 219
            G +EGE+R  +  I G +K  + +S+ I + K AVVTGDV Y  ++++ GA++ GKL H A    K+ KPAAA
Sbjct:   50 GLVEGEIRAPNIVINGEVKGDVYSSEHIELAKKAVVTGDVHYVMMEMVMGAKVNGKLLHVATDKSKKAKPAAA 122          
BLAST of mRNA_L-elsbetiae_contig10225.275.1 vs. uniprot
Match: UPI000D345703 (polymer-forming cytoskeletal protein n=2 Tax=Saccharospirillum mangrovi TaxID=2161747 RepID=UPI000D345703)

HSP 1 Score: 54.3 bits (129), Expect = 3.900e-7
Identity = 29/73 (39.73%), Postives = 45/73 (61.64%), Query Frame = 1
Query:    1 GDMEGEVRCSDGCIGGNMKATLSASKTILIGKAAVVTGDVTYSSLQVMDGARLQGKLTHYAAPPQKEPKPAAA 219
            G +EGE+R  +  I G +K  + +S+ I + K AVVTGDV Y  ++++ GA++ GKL H A    K+ KP  +
Sbjct:   57 GLVEGEIRAPNIVINGEVKGDVYSSEHIELAKKAVVTGDVHYVMMEMVMGAKVNGKLLHVATDKSKKAKPVTS 129          
BLAST of mRNA_L-elsbetiae_contig10225.275.1 vs. uniprot
Match: UPI000400B92E (polymer-forming cytoskeletal protein n=2 Tax=Saccharospirillum TaxID=231683 RepID=UPI000400B92E)

HSP 1 Score: 53.5 bits (127), Expect = 5.340e-7
Identity = 34/84 (40.48%), Postives = 49/84 (58.33%), Query Frame = 1
Query:    1 GDMEGEVRCSDGCIGGNMKATLSASKTILIGKAAVVTGDVTYSSLQVMDGARLQGKLTHYAAPPQK-----EPKPAAAVKKEPM 237
            G +EGE+R  +  I G +K  + +S+ I + K AVVTGDV Y  ++++ GA++ GKL H AA   K     EP  A  V + PM
Sbjct:   57 GYVEGEIRAPNIVINGEVKGDVYSSEHIELAKKAVVTGDVHYVMMEMVMGAKVNGKLLHVAAEKGKKVSKPEPVDAKPVTEAPM 140          
BLAST of mRNA_L-elsbetiae_contig10225.275.1 vs. uniprot
Match: UPI0018AB98B7 (polymer-forming cytoskeletal protein n=1 Tax=Reinekea sp. G2M2-21 TaxID=2788942 RepID=UPI0018AB98B7)

HSP 1 Score: 52.0 bits (123), Expect = 1.820e-6
Identity = 29/79 (36.71%), Postives = 45/79 (56.96%), Query Frame = 1
Query:    1 GDMEGEVRCSDGCIGGNMKATLSASKTILIGKAAVVTGDVTYSSLQVMDGARLQGKLTHYAAPPQKEPKPAAAVKKEPM 237
            G +EGE+R     I G +K  + +S  I + K A+VTGDV Y  ++++ GA++ GKL H  +   K+ KP    K  P+
Sbjct:   57 GIVEGEIRAPHVVINGEVKGDVYSSDHITLNKNALVTGDVHYVMMEMVMGAKVNGKLLHVPSEKGKKSKPDLLTKPTPV 135          
BLAST of mRNA_L-elsbetiae_contig10225.275.1 vs. uniprot
Match: UPI001C085613 (polymer-forming cytoskeletal protein n=1 Tax=Reinekea forsetii TaxID=1336806 RepID=UPI001C085613)

HSP 1 Score: 50.8 bits (120), Expect = 5.580e-6
Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 1
Query:    1 GDMEGEVRCSDGCIGGNMKATLSASKTILIGKAAVVTGDVTYSSLQVMDGARLQGKLTHYAA 186
            G +EGE+R     I G +K  + +S  I + K A+VTGDV Y  ++++ GA++ GKL H AA
Sbjct:   57 GIVEGEIRAPHVVINGEVKGDVYSSDHITLNKNALVTGDVHYVMMEMVMGAKVNGKLLHVAA 118          
BLAST of mRNA_L-elsbetiae_contig10225.275.1 vs. uniprot
Match: A0A2E8VHH4_9BACT (Uncharacterized protein n=2 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A2E8VHH4_9BACT)

HSP 1 Score: 49.3 bits (116), Expect = 1.880e-5
Identity = 22/58 (37.93%), Postives = 36/58 (62.07%), Query Frame = 1
Query:    1 GDMEGEVRCSDGCIGGNMKATLSASKTILIGKAAVVTGDVTYSSLQVMDGARLQGKLT 174
            G   G ++ SD  IGG++K  +  S  I++G  + ++GD+TY SL + DGA+ QG  +
Sbjct:   51 GKXXGNIQASDAHIGGSIKGDIXVSNKIVLGSKSEISGDLTYRSLIIEDGAQFQGSCS 108          
BLAST of mRNA_L-elsbetiae_contig10225.275.1 vs. uniprot
Match: A0A2K8KU71_9GAMM (Cell shape-determining protein CcmA n=1 Tax=Reinekea forsetii TaxID=1336806 RepID=A0A2K8KU71_9GAMM)

HSP 1 Score: 48.9 bits (115), Expect = 2.810e-5
Identity = 24/59 (40.68%), Postives = 38/59 (64.41%), Query Frame = 1
Query:    1 GDMEGEVRCSDGCIGGNMKATLSASKTILIGKAAVVTGDVTYSSLQVMDGARLQGKLTH 177
            G +EGE+R     I G +K  + +S+ I + K A+VTGDV Y  ++++ GA++ GKL H
Sbjct:   57 GIVEGEIRAPHVVINGEVKGDVYSSEHITLNKNALVTGDVHYVMMEMVMGAKVNGKLLH 115          
BLAST of mRNA_L-elsbetiae_contig10225.275.1 vs. uniprot
Match: I0HV62_RUBGI (Uncharacterized protein n=3 Tax=Rubrivivax gelatinosus TaxID=28068 RepID=I0HV62_RUBGI)

HSP 1 Score: 48.1 bits (113), Expect = 4.580e-5
Identity = 32/76 (42.11%), Postives = 44/76 (57.89%), Query Frame = 1
Query:    1 GDMEGEVRCSDGCIGGNMKATLSASKTILIGKAAVVTGDVTYSSLQVMDGARLQGKL--THYAAPPQKEPKPAAAV 222
            G +EG +   +  I G +  T+ A + I+I   AVVTG VTY ++Q+  GAR+ G L  +  AAPP   P PA AV
Sbjct:   50 GRVEGSLSARNVDIRGEVGETIVAREQIVIRSTAVVTGTVTYQTIQIEGGARIDGHLRRSDTAAPP---PAPAPAV 122          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10225.275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7FQI6_ECTSI9.320e-2882.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYZ3_9PHAE1.230e-2475.81Reverse transcriptase domain-containing protein n=... [more]
UPI001E3BA90A8.490e-943.84polymer-forming cytoskeletal protein n=1 Tax=Sacch... [more]
UPI000D3457033.900e-739.73polymer-forming cytoskeletal protein n=2 Tax=Sacch... [more]
UPI000400B92E5.340e-740.48polymer-forming cytoskeletal protein n=2 Tax=Sacch... [more]
UPI0018AB98B71.820e-636.71polymer-forming cytoskeletal protein n=1 Tax=Reine... [more]
UPI001C0856135.580e-641.94polymer-forming cytoskeletal protein n=1 Tax=Reine... [more]
A0A2E8VHH4_9BACT1.880e-537.93Uncharacterized protein n=2 Tax=Candidatus Marinim... [more]
A0A2K8KU71_9GAMM2.810e-540.68Cell shape-determining protein CcmA n=1 Tax=Reinek... [more]
I0HV62_RUBGI4.580e-542.11Uncharacterized protein n=3 Tax=Rubrivivax gelatin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10225contigL-elsbetiae_contig10225:6052..6288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size237
Cds size231
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815253.1940138-CDS-L-elsbetiae_contig10225:6051..62821622815253.1940138-CDS-L-elsbetiae_contig10225:6051..6282Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10225 6052..6282 -
1691682797.7050076-CDS-L-elsbetiae_contig10225:6051..62821691682797.7050076-CDS-L-elsbetiae_contig10225:6051..6282Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10225 6052..6282 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815253.205254-UTR-L-elsbetiae_contig10225:6282..62881622815253.205254-UTR-L-elsbetiae_contig10225:6282..6288Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10225 6283..6288 -
1691682797.7155368-UTR-L-elsbetiae_contig10225:6282..62881691682797.7155368-UTR-L-elsbetiae_contig10225:6282..6288Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10225 6283..6288 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10225.275.1prot_L-elsbetiae_contig10225.275.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10225 6052..6282 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10225.275.1

>prot_L-elsbetiae_contig10225.275.1 ID=prot_L-elsbetiae_contig10225.275.1|Name=mRNA_L-elsbetiae_contig10225.275.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=77bp
MEGEVRCSDGCIGGNMKATLSASKTILIGKAAVVTGDVTYSSLQVMDGAR
LQGKLTHYAAPPQKEPKPAAAVKKEPM
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mRNA from alignment at L-elsbetiae_contig10225:6052..6288-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10225.275.1 ID=mRNA_L-elsbetiae_contig10225.275.1|Name=mRNA_L-elsbetiae_contig10225.275.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=237bp|location=Sequence derived from alignment at L-elsbetiae_contig10225:6052..6288- (Laminarionema elsbetiae ELsaHSoW15)
GGTGACATGGAGGGAGAGGTGCGATGCTCCGACGGCTGCATCGGGGGCAA CATGAAGGCGACCCTCAGCGCCTCCAAGACGATCCTCATCGGGAAGGCGG CCGTCGTGACCGGCGACGTGACGTACAGCAGCCTCCAGGTCATGGACGGG GCCAGGCTGCAGGGCAAGCTCACCCACTACGCTGCCCCCCCACAAAAGGA GCCGAAGCCGGCGGCTGCTGTCAAAAAGGAGCCGATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10225:6052..6288-

>mRNA_L-elsbetiae_contig10225.275.1 ID=mRNA_L-elsbetiae_contig10225.275.1|Name=mRNA_L-elsbetiae_contig10225.275.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=462bp|location=Sequence derived from alignment at L-elsbetiae_contig10225:6052..6288- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGGAGAGGTGCGATGCTCCGACGGCTGCATCGGGGGCAACATGAA
GGCGACCCTCAGCGCCTCCAAGACGATCCTCATCGGGAAGGCGGCCGTCG
TGACCGGCGACGTGACGTACAGCAGCCTCCAGGTCATGGACGGGGCCAGG
CTGCAGGGCAAGCTCACCCACTACGCTGCCCCCCCACAAAAGGAGCCGAA
GCCGGCGGCTGCTGTCAAAAAGGAGCCGATGATGGAGGGAGAGGTGCGAT
GCTCCGACGGCTGCATCGGGGGCAACATGAAGGCGACCCTCAGCGCCTCC
AAGACGATCCTCATCGGGAAGGCGGCCGTCGTGACCGGCGACGTGACGTA
CAGCAGCCTCCAGGTCATGGACGGGGCCAGGCTGCAGGGCAAGCTCACCC
ACTACGCTGCCCCCCCACAAAAGGAGCCGAAGCCGGCGGCTGCTGTCAAA
AAGGAGCCGATG
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