mRNA_L-elsbetiae_contig10222.270.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10222.270.1
Unique NamemRNA_L-elsbetiae_contig10222.270.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10222.270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10222contigL-elsbetiae_contig10222:2589..3998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size244
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815252.887964-CDS-L-elsbetiae_contig10222:2588..26491622815252.887964-CDS-L-elsbetiae_contig10222:2588..2649Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10222 2589..2649 +
1691682797.545204-CDS-L-elsbetiae_contig10222:2588..26491691682797.545204-CDS-L-elsbetiae_contig10222:2588..2649Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10222 2589..2649 +
1622815252.8981848-CDS-L-elsbetiae_contig10222:3815..39971622815252.8981848-CDS-L-elsbetiae_contig10222:3815..3997Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10222 3816..3997 +
1691682797.554701-CDS-L-elsbetiae_contig10222:3815..39971691682797.554701-CDS-L-elsbetiae_contig10222:3815..3997Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10222 3816..3997 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10222.270.1prot_L-elsbetiae_contig10222.270.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10222 2589..3997 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10222.270.1

>prot_L-elsbetiae_contig10222.270.1 ID=prot_L-elsbetiae_contig10222.270.1|Name=mRNA_L-elsbetiae_contig10222.270.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=81bp
VGRDQPCLRGTPAAAVWAAQGMNERSNIPNGILLAFGIGHGPWGGRCGQL
LLSEYWAVAAGGGARSIPWMQHNWIGLPSSA
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mRNA from alignment at L-elsbetiae_contig10222:2589..3998+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10222.270.1 ID=mRNA_L-elsbetiae_contig10222.270.1|Name=mRNA_L-elsbetiae_contig10222.270.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1410bp|location=Sequence derived from alignment at L-elsbetiae_contig10222:2589..3998+ (Laminarionema elsbetiae ELsaHSoW15)
GTTGGACGAGATCAACCTTGCCTCCGCGGAACCCCTGCAGCGGCTGTCTG
GGCTGCTCAAGGTATGGCGAGAGCAACAGCGCCTGCATGCCAAATACCAT
GTCTGTGATGAATGCATGCTTTAAATGTTCCCTTGGTAGTTAATCCAAAT
GTATTGGTTTCCGTTTCGACTCTACTTTGGCGGAGTGGTCCCAGGTGCGG
TAGTTCATGTAAACCATGGCTTAGGCGCCCTTGAAAACTTGGAATGCGAT
CGGGTTTGGAAGCTCCTTGTACCTAGAAGTTCACGGCCGACAAGGCATGC
GTTGCACCCACGGTGTTGTGTTGCGTATGCGGTGTTTCTGCTCGAGTTTT
GTCGCGGCGGTATTTGTCTCTGTCGCGTTGTTGAATGCAGAATGTGACGT
CATAGGGCTGACTCTTTCTGCCGGGTAACTCCTGCATATAGGCCCACCCA
TAAAGACGGGCTTTCGATTATTCATGGTGAGCTATGTATGCTGGTAAATA
CCCTGGAAATGCTGGAATAGCTTTGCGTAAGTCCGCCAAGAGAGGCCTTG
TTACTCTCTAGCCTAAAGGGGGGGGGGCTTGGTATAGCACAGAGACGATC
GCGGATTCGTTGCTTGTTTAAAGGTAGTGCTTCATCCGTTTTGCGGCATC
AAATCAGTCACAGGACTCTCAGATTGACCCTCGCTCTTGACTTCCGTGCC
GTTGCGTGATATAAAAATAGTGTTTCTCCGTGCTTCCAATTTATTTTGTG
CATTTTCCTGAAGTGAAACTAGATATCGTAGGACATTGGTTGGAGCCCTG
TACTGCGCCACGCGTCTGGTTGGCGGGGGTTTCAGCCCAAACAGGACCAC
GATGAAGGGCTACAGAGCCTTCTCTGTCTCGAGACAGACGCAGATAGACG
GGTGAGGAAAATGCTGCCGCACAGCATGTCTCGAGACCTGAATGTCGTAA
GCTGTTTTCTAGCGTGCACCATCATGTGACACGGTGCTAGCGGTACAAAA
GCAAACCACTATGTGTTGCAGTCCAACGCACGTTGTGTCAGCGAGGCCGT
TTCATCCGACTGTGTTATGAACAGTACCTATGATCCATGGCTGTTATTTC
AACGTTTTCCCGTGAGCGAGGAGGACCTGCCGGGGCTTTGTTTTAGGGGG
GGCGTCCTTTGCCGCCCGCACCTCATCCCACCCCCTTTTAACCCTGTCAC
ACGCTCTCTTTTGTGTATATGGTTCAGGGATGAACGAGCGTTCGAATATC
CCCAATGGTATTCTTCTAGCCTTCGGCATAGGGCATGGACCCTGGGGGGG
ACGTTGCGGCCAACTTTTATTGAGCGAATATTGGGCCGTTGCGGCTGGAG
GGGGCGCGCGCTCGATTCCGTGGATGCAGCACAATTGGATCGGGCTACCA
AGCAGCGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10222:2589..3998+

>mRNA_L-elsbetiae_contig10222.270.1 ID=mRNA_L-elsbetiae_contig10222.270.1|Name=mRNA_L-elsbetiae_contig10222.270.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=486bp|location=Sequence derived from alignment at L-elsbetiae_contig10222:2589..3998+ (Laminarionema elsbetiae ELsaHSoW15)
GTTGGACGAGATCAACCTTGCCTCCGCGGAACCCCTGCAGCGGCTGTCTG
GGCTGCTCAAGGTTGGACGAGATCAACCTTGCCTCCGCGGAACCCCTGCA
GCGGCTGTCTGGGCTGCTCAAGGGATGAACGAGCGTTCGAATATCCCCAA
TGGTATTCTTCTAGCCTTCGGCATAGGGCATGGACCCTGGGGGGGACGTT
GCGGCCAACTTTTATTGAGCGAATATTGGGCCGTTGCGGCTGGAGGGGGC
GCGCGCTCGATTCCGTGGATGCAGCACAATTGGATCGGGCTACCAAGCAG
CGCAGGATGAACGAGCGTTCGAATATCCCCAATGGTATTCTTCTAGCCTT
CGGCATAGGGCATGGACCCTGGGGGGGACGTTGCGGCCAACTTTTATTGA
GCGAATATTGGGCCGTTGCGGCTGGAGGGGGCGCGCGCTCGATTCCGTGG
ATGCAGCACAATTGGATCGGGCTACCAAGCAGCGCA
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