mRNA_L-elsbetiae_contig10218.266.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10218.266.1
Unique NamemRNA_L-elsbetiae_contig10218.266.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig10218.266.1 vs. uniprot
Match: D7FU20_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU20_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 9.080e-42
Identity = 80/102 (78.43%), Postives = 93/102 (91.18%), Query Frame = 1 
Query:    1 VQVNGQLFKGDVEELLKTLRGLIEQLVVGDETLLRTVCQDIVRASSRTSSGGDAYAVMAALLSRPAE-DLLTPSGSESAPIGISVDASDGEVVITVENRCAL 303
            +++NG+LF+G+V+ELL+TLRGLI+ LVVGDETL R VC DI+RASSRTSSGGDAYAVMAALLSRPAE DLLTPSGS S+PIGISV ++DGEVVITVENR  L
Sbjct:   70 IKMNGRLFEGNVDELLETLRGLIDPLVVGDETLTRAVCHDIMRASSRTSSGGDAYAVMAALLSRPAEGDLLTPSGSGSSPIGISVASADGEVVITVENRFVL 171
[Close]
BLAST of mRNA_L-elsbetiae_contig10218.266.1 vs. uniprot
Match: A0A6H5KR82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR82_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 8.200e-40
Identity = 78/102 (76.47%), Postives = 91/102 (89.22%), Query Frame = 1 
Query:    1 VQVNGQLFKGDVEELLKTLRGLIEQLVVGDETLLRTVCQDIVRASSRTSSGGDAYAVMAALLSRPAE-DLLTPSGSESAPIGISVDASDGEVVITVENRCAL 303
            +++NG+LF+G+V+ELLKTLRGLI+ LVVGDETL R VC DI+RASSRTSSGGDAYAVMAALLSRPA+ DLLTPSGS S+PIGIS+  +DGEVVITVEN   L
Sbjct: 1214 IEMNGRLFEGNVDELLKTLRGLIDPLVVGDETLTRAVCHDIIRASSRTSSGGDAYAVMAALLSRPAKGDLLTPSGSGSSPIGISIAGADGEVVITVENSFVL 1315
[Close]
BLAST of mRNA_L-elsbetiae_contig10218.266.1 vs. uniprot
Match: K8YUK8_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YUK8_NANGC)

HSP 1 Score: 73.9 bits (180), Expect = 2.280e-13
Identity = 46/102 (45.10%), Postives = 61/102 (59.80%), Query Frame = 1 
Query:    1 VQVNGQLFKGDVEELLKTLRGLIEQLVVGDETLLRTVCQDIVRASSRTSSGGDAYAVMAALLSRPAEDLLTPS-GSESAPIGISVDASDGEVVITVENRCAL 303
            V +NG+ F GD   L   +  L+  LVV  ET    +CQDI+RASSRT+SGGD+Y +  +LL RP  +LLTP+  + S PI I + A +G V I   N   L
Sbjct:   19 VVLNGRSFSGDPSGLQSEMHRLVAPLVVDSETAT-LLCQDILRASSRTASGGDSYVITTSLLVRPG-NLLTPAMAASSIPISIHIGAEEGVVDIAAYNSYVL 118
[Close]
BLAST of mRNA_L-elsbetiae_contig10218.266.1 vs. uniprot
Match: A0A4D9DEA1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DEA1_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.210e-13
Identity = 46/102 (45.10%), Postives = 61/102 (59.80%), Query Frame = 1 
Query:    1 VQVNGQLFKGDVEELLKTLRGLIEQLVVGDETLLRTVCQDIVRASSRTSSGGDAYAVMAALLSRPAEDLLTPS-GSESAPIGISVDASDGEVVITVENRCAL 303
            V +NG+ F GD   L   +  L+  LVV  ET    +CQDI+RASSRT+SGGD+Y +  +LL RP  +LLTP+  + S PI I + A +G V I   N   L
Sbjct:  686 VVLNGRSFSGDPSGLQSEMHRLVAPLVVDSETAT-LLCQDILRASSRTASGGDSYVITTSLLVRPG-NLLTPATAASSIPISIHIGAEEGVVDIAAYNSYVL 785
[Close]
BLAST of mRNA_L-elsbetiae_contig10218.266.1 vs. uniprot
Match: W7TIK0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIK0_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.560e-9
Identity = 39/81 (48.15%), Postives = 51/81 (62.96%), Query Frame = 1 
Query:   64 LIEQLVVGDETLLRTVCQDIVRASSRTSSGGDAYAVMAALLSRPAEDLLTPS-GSESAPIGISVDASDGEVVITVENRCAL 303
            L+  LVV  ET    +CQDI+RASSRT+SGGD+Y +  +LL RP  +LLTP+  + S PI I + A +G V I   N   L
Sbjct:    4 LVAPLVVDSETAT-LLCQDILRASSRTASGGDSYVITTSLLVRPG-NLLTPAMAASSIPISIHIGAEEGVVDIAAYNSYVL 82
[Close]
BLAST of mRNA_L-elsbetiae_contig10218.266.1 vs. uniprot
Match: A0A7S1UIL6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UIL6_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.740e-8
Identity = 36/91 (39.56%), Postives = 58/91 (63.74%), Query Frame = 1 
Query:    1 VQVNGQLFKGDVEELLKTLRGLIEQLVV-GDETLLRTVCQDIVRASSRTSSGGDAYAVMAALLSRPAED-----LLTPSGSESAPIGISVD 255
            V+VNG   +G+ + L +T+R  +  LV   ++ L+ +V  D++RASSRT+ GGDAY ++ +L  R A+D     LLTPS  +  PI ++V+
Sbjct:  884 VRVNGVPVEGNADVLRETVREALLSLVDDSNDVLVNSVVTDVMRASSRTAHGGDAYLILQSLFVRQADDGMPVDLLTPSPEQPPPIEVTVN 974
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10218.266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FU20_ECTSI9.080e-4278.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KR82_9PHAE8.200e-4076.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K8YUK8_NANGC2.280e-1345.10Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A4D9DEA1_9STRA3.210e-1345.10Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TIK0_9STRA1.560e-948.15Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S1UIL6_9STRA1.740e-839.56Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10218contigL-elsbetiae_contig10218:5756..6791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815252.65263-CDS-L-elsbetiae_contig10218:5755..58631622815252.65263-CDS-L-elsbetiae_contig10218:5755..5863Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10218 5756..5863 +
1691682797.418891-CDS-L-elsbetiae_contig10218:5755..58631691682797.418891-CDS-L-elsbetiae_contig10218:5755..5863Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10218 5756..5863 +
1622815252.6671736-CDS-L-elsbetiae_contig10218:6596..67911622815252.6671736-CDS-L-elsbetiae_contig10218:6596..6791Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10218 6597..6791 +
1691682797.4313614-CDS-L-elsbetiae_contig10218:6596..67911691682797.4313614-CDS-L-elsbetiae_contig10218:6596..6791Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10218 6597..6791 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10218.266.1prot_L-elsbetiae_contig10218.266.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10218 5756..6791 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10218.266.1

>prot_L-elsbetiae_contig10218.266.1 ID=prot_L-elsbetiae_contig10218.266.1|Name=mRNA_L-elsbetiae_contig10218.266.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
VQVNGQLFKGDVEELLKTLRGLIEQLVVGDETLLRTVCQDIVRASSRTSS
GGDAYAVMAALLSRPAEDLLTPSGSESAPIGISVDASDGEVVITVENRCA
L
back to top

mRNA from alignment at L-elsbetiae_contig10218:5756..6791+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10218.266.1 ID=mRNA_L-elsbetiae_contig10218.266.1|Name=mRNA_L-elsbetiae_contig10218.266.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1036bp|location=Sequence derived from alignment at L-elsbetiae_contig10218:5756..6791+ (Laminarionema elsbetiae ELsaHSoW15)
GTGCAGGTGAATGGGCAGTTGTTCAAGGGAGACGTGGAGGAGCTGCTGAA
GACGCTGCGCGGGCTGATAGAGCAGCTCGTAGTGGGCGACGAGACGCTCT
TGAGGACGGTCAGTGCATCACTCGTGTTCATCTCGTTGGCCACCAGAGAA
GACTGATTCTGTGTATTGTACCTACATCCGAATATGTCTTGTGTCGATGC
CACTGACCGGCCGGCCGCCCAATCAAACAGAGGTGGAGATGTCACGTTGT
TTTCAGTCGGCTAAATCGCGTGTGCGTGTGTTTTCGTTTGTTCGCATCGA
CCGCGCTACCCGGCTGACCGATAATGGGACGGCAGAGTTGGCGGGTAAAT
TGTGAATCGTCAGGCCCACCTTGTGCGTGTTTGTGAGTGCGTGTGTGTGT
GTGATATTGTTGTCTTATTCCCGGCCGTGATACAGGTACGCAGCAGGCGG
TATTATCGTTGTCCTCCCGCCTTTTGTTTCTGCCTTTGTCTCTTGCCTCT
CTCACCATCCCGCGTTTCTTTCTCCCGCTCAATTGGTGAAAGTATGTTTG
TGCCTGCGCCTCGATTGGCGAGACACCGCAAGAACAGACCGACAGAAATT
ACCCGCAACACATACGCACACACACACACACACATCTTGATGTGTTCCCA
ATGATCAACCGTACCACGCCTCAATGGTTACCAGTACGTGACAGGGAAAT
ACAGCAAAACTCACGCGCTTAACTTTGACGCCGTTTTTTTTATTGTTTGT
CGTGCTCTTTGTTGCGGTGGTGGTGCTGATGCTGATGCTGATGCTGATGT
TGGTGTGCGCGGCGGCGGCGGGGGGGGTGATCATGCGACAGGTATGCCAA
GACATCGTACGTGCGTCGAGCCGCACATCTTCCGGCGGGGACGCGTACGC
CGTCATGGCGGCCCTCCTGTCGCGGCCCGCGGAGGACCTGCTGACCCCGT
CGGGGTCCGAGTCGGCACCCATCGGCATCAGCGTAGACGCCTCCGACGGG
GAGGTGGTCATCACGGTCGAGAACAGGTGTGCATTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig10218:5756..6791+

>mRNA_L-elsbetiae_contig10218.266.1 ID=mRNA_L-elsbetiae_contig10218.266.1|Name=mRNA_L-elsbetiae_contig10218.266.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig10218:5756..6791+ (Laminarionema elsbetiae ELsaHSoW15)
GTGCAGGTGAATGGGCAGTTGTTCAAGGGAGACGTGGAGGAGCTGCTGAA
GACGCTGCGCGGGCTGATAGAGCAGCTCGTAGTGGGCGACGAGACGCTCT
TGAGGACGGTGCAGGTGAATGGGCAGTTGTTCAAGGGAGACGTGGAGGAG
CTGCTGAAGACGCTGCGCGGGCTGATAGAGCAGCTCGTAGTGGGCGACGA
GACGCTCTTGAGGACGGTATGCCAAGACATCGTACGTGCGTCGAGCCGCA
CATCTTCCGGCGGGGACGCGTACGCCGTCATGGCGGCCCTCCTGTCGCGG
CCCGCGGAGGACCTGCTGACCCCGTCGGGGTCCGAGTCGGCACCCATCGG
CATCAGCGTAGACGCCTCCGACGGGGAGGTGGTCATCACGGTCGAGAACA
GGTGTGCATTGGTATGCCAAGACATCGTACGTGCGTCGAGCCGCACATCT
TCCGGCGGGGACGCGTACGCCGTCATGGCGGCCCTCCTGTCGCGGCCCGC
GGAGGACCTGCTGACCCCGTCGGGGTCCGAGTCGGCACCCATCGGCATCA
GCGTAGACGCCTCCGACGGGGAGGTGGTCATCACGGTCGAGAACAGGTGT
GCATTG
back to top