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Homology
BLAST of mRNA_L-elsbetiae_contig10192.240.1 vs. uniprot
Match: A0A6H5JGK6_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK6_9PHAE) HSP 1 Score: 67.4 bits (163), Expect = 7.550e-10 Identity = 35/96 (36.46%), Postives = 52/96 (54.17%), Query Frame = 1
Query: 43 EGCNASSCLMCLMQRKPCRLCGHVTSTQRLREAVWSMSRFVERWSL-------------------ASSGL-----PPDARSMRLEVARRWVTLITG 258
EGCNA CL+C+M+ +PC +CGH S R+RE + S + F+E+WS AS+G PP + ++R EVA RW+++ G
Sbjct: 183 EGCNADRCLLCVMRSRPCDMCGHPVSADRVREHMASTTGFIEKWSKFCLGKNSRRREESVAAVAGASAGPSEVHHPPRSIALRAEVAHRWMSVAAG 278
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 538 |
| Cds size | 534 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815249.8065474-CDS-L-elsbetiae_contig10192:4028..4424 | 1622815249.8065474-CDS-L-elsbetiae_contig10192:4028..4424 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10192 4029..4424 - |
| 1691682795.57198-CDS-L-elsbetiae_contig10192:4028..4424 | 1691682795.57198-CDS-L-elsbetiae_contig10192:4028..4424 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10192 4029..4424 - |
| 1622815249.8195188-CDS-L-elsbetiae_contig10192:5037..5130 | 1622815249.8195188-CDS-L-elsbetiae_contig10192:5037..5130 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10192 5038..5130 - |
| 1691682795.5807269-CDS-L-elsbetiae_contig10192:5037..5130 | 1691682795.5807269-CDS-L-elsbetiae_contig10192:5037..5130 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10192 5038..5130 - |
| 1622815249.8286448-CDS-L-elsbetiae_contig10192:6106..6151 | 1622815249.8286448-CDS-L-elsbetiae_contig10192:6106..6151 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10192 6107..6151 - |
| 1691682795.5928788-CDS-L-elsbetiae_contig10192:6106..6151 | 1691682795.5928788-CDS-L-elsbetiae_contig10192:6106..6151 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10192 6107..6151 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig10192.240.1 >prot_L-elsbetiae_contig10192.240.1 ID=prot_L-elsbetiae_contig10192.240.1|Name=mRNA_L-elsbetiae_contig10192.240.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=178bp
CLECVKFTEIPAFCEGCNASSCLMCLMQRKPCRLCGHVTSTQRLREAVWS
MSRFVERWSLASSGLPPDARSMRLEVARRWVTLITGPRTVATPPAGGTTS
GGSGVGGGGGGHGADFSAGRTSPAAPPGAPRQQQQPAAAQPPTTGPRPPP
AAAYKLGQYEGAAGQPGARENRGGTQER back to topmRNA from alignment at L-elsbetiae_contig10192:4027..6151- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig10192.240.1 ID=mRNA_L-elsbetiae_contig10192.240.1|Name=mRNA_L-elsbetiae_contig10192.240.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2125bp|location=Sequence derived from alignment at L-elsbetiae_contig10192:4027..6151- (Laminarionema elsbetiae ELsaHSoW15)
TGCCTCGAGTGCGTCAAGTTCACCGAGATCCCGGCATTCTGCGAGGTAAC
TTGTGTGTAGTTGTTGTTTCTCACACTAGCTCTCTACATACATAGTCAAA
AACATCCTTGAGGGCCGGCCCGTGGTCACGAAAACACTTAAGGGGGCACG
CTCGACGCCGCGGAAGAAAAATAAAAACAAAAAATATGGTACATACGTGC
TGTACGCGCCCGGCAGTACTAAACTGGACCCCGAGGGGTCTTGCGTCTCG
CCAACAGAAAATCGCCAACACAAAATCGAAGGTAGAGTAACGAGGCCCCA
TGGAGCGAATAGACGGATAGACGGCTTCGGTGTAGAGAGGTGTTTTGGTG
TCAGTTCCGCGGAGCGGTGTCTAGATATATATGTAGATATGTAGATATGT
ATGTCGACTTTTTTTAATTGTCGGTTTTGGCGCGTTCCGTACCAAATCGA
CGACCACAACTAACTCCCATGTCTCGTGCTTGTGTTTTTGTTTTTGTTTA
CCTTCAGCCACACACACTATTTGTCTTTGATTTTTATCGCTTTGCTGAAT
GATTCTTCGGGTCCACTCTTATTTTCGTATACCTTTTTTAGGCATAAGTT
GTTGTGTAGCCTGTGACAACGGCAATTGACCGCGTCAGGTGTTGGAATAC
TATGCCCATATGTAAGGAGGTACTGGGTGGAGAGACCGGACCGGTTTTTA
ATGTGAGGACACCAGCAACACTCTCCGCAACCTCGTTGGATGGCCTCCGT
TCCCCCCCCTGTTTGTTTGCTCCTCGCGTGTGTGTATCTTTTGTCTGCAG
GCATACATACATACATACATATGGACCTACATACAACGAAAATAAAAAAT
AAAAAATTGTTCGATCTTCGCGTGTGTAATGCTTTGATCGGAATATGTTA
TTTTGAATGCCCCGCTGCTCGTGTGTGTTCCTGCCCCCCCCCCCCCTTTA
CGCCCGTCCTCTGTCGGGGGGGGGGGGTGCGGGGCGTTTCTTATTTGCGC
TGTTTTGCTTCGCACGGAAAGGGGTGCAATGCGAGCAGCTGCCTGATGTG
TCTCATGCAGAGGAAGCCCTGCAGACTCTGCGGACACGTCACCAGCACGC
AGCGGCTCCGTGAGGTGCGCGGAGACGTATAAGTACACATACATACACAT
GTATGTACATGCATACATACCATGCTACTTCAGAGCAGTACCACCATACT
TCGAGTATATTATAAATATGTGTGCGAGAGGTGTTCCCATGAAGTACATA
TGTATGTACGAACCAATCAAGCCTCGCGCATGACGTATGGTACATGTCTG
TCTGCATAACTCCGGAGGAAATTTTCGATTCTGAAGCCACGTTTCGCGCG
TTGCCTCTATTCGAGGGCGTTCCGCCTCCGTTCCGCACTGCTAGATTACT
ACCACTAGATTCCATCCGTCCCTTTTAGAGGATCAATGCAGCGGCAGCAG
CGGCAGCTGCAGCGATTCTGAGCGATGTCCAGCCGCATTGTTTTGTTTCC
AGCCCGGCTCCAGTCCGCAGATAATAATATACTTCTAGACGGCAGTAGCT
CAACTTTCGCGGCGCGTGTCACGATTCCGCCGCCGTCATTGGTGCGCAAC
CCCGCCTCTCTCTCTCACGCCCCTGTTTTCGCGTACGACCCCCCCCCCTC
CCCTTCTACTACGCCGCGCCGCCAAAACCGCCCGGGAATGGCAATACACA
TCCCAAAACGTCAAAACATCTCCGCAGGCGGTGTGGTCGATGTCGCGTTT
CGTAGAGAGGTGGTCGTTGGCGTCGTCTGGGTTGCCTCCCGACGCGCGCT
CGATGCGCCTGGAGGTCGCGCGGCGATGGGTGACCCTGATTACCGGCCCT
CGGACCGTCGCTACCCCTCCTGCTGGTGGAACTACTAGTGGCGGTAGCGG
TGTTGGTGGCGGTGGCGGTGGTCACGGAGCTGATTTCTCCGCAGGAAGAA
CTTCTCCGGCGGCGCCGCCGGGGGCGCCTCGACAGCAGCAGCAGCCGGCG
GCCGCGCAGCCTCCAACAACGGGCCCCCGCCCCCCCCCCGCCGCCGCGTA
CAAACTCGGCCAGTATGAGGGCGCGGCGGGGCAGCCTGGGGCCCGGGAGA
ATCGCGGGGGCACGCAAGAAAGGCG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig10192:4027..6151- >mRNA_L-elsbetiae_contig10192.240.1 ID=mRNA_L-elsbetiae_contig10192.240.1|Name=mRNA_L-elsbetiae_contig10192.240.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1068bp|location=Sequence derived from alignment at L-elsbetiae_contig10192:4027..6151- (Laminarionema elsbetiae ELsaHSoW15)
TGCCTCGAGTGCGTCAAGTTCACCGAGATCCCGGCATTCTGCGAGTGCCT
CGAGTGCGTCAAGTTCACCGAGATCCCGGCATTCTGCGAGGGGTGCAATG
CGAGCAGCTGCCTGATGTGTCTCATGCAGAGGAAGCCCTGCAGACTCTGC
GGACACGTCACCAGCACGCAGCGGCTCCGTGAGGGGTGCAATGCGAGCAG
CTGCCTGATGTGTCTCATGCAGAGGAAGCCCTGCAGACTCTGCGGACACG
TCACCAGCACGCAGCGGCTCCGTGAGGCGGTGTGGTCGATGTCGCGTTTC
GTAGAGAGGTGGTCGTTGGCGTCGTCTGGGTTGCCTCCCGACGCGCGCTC
GATGCGCCTGGAGGTCGCGCGGCGATGGGTGACCCTGATTACCGGCCCTC
GGACCGTCGCTACCCCTCCTGCTGGTGGAACTACTAGTGGCGGTAGCGGT
GTTGGTGGCGGTGGCGGTGGTCACGGAGCTGATTTCTCCGCAGGAAGAAC
TTCTCCGGCGGCGCCGCCGGGGGCGCCTCGACAGCAGCAGCAGCCGGCGG
CCGCGCAGCCTCCAACAACGGGCCCCCGCCCCCCCCCCGCCGCCGCGTAC
AAACTCGGCCAGTATGAGGGCGCGGCGGGGCAGCCTGGGGCCCGGGAGAA
TCGCGGGGGCACGCAAGAAAGGGCGGTGTGGTCGATGTCGCGTTTCGTAG
AGAGGTGGTCGTTGGCGTCGTCTGGGTTGCCTCCCGACGCGCGCTCGATG
CGCCTGGAGGTCGCGCGGCGATGGGTGACCCTGATTACCGGCCCTCGGAC
CGTCGCTACCCCTCCTGCTGGTGGAACTACTAGTGGCGGTAGCGGTGTTG
GTGGCGGTGGCGGTGGTCACGGAGCTGATTTCTCCGCAGGAAGAACTTCT
CCGGCGGCGCCGCCGGGGGCGCCTCGACAGCAGCAGCAGCCGGCGGCCGC
GCAGCCTCCAACAACGGGCCCCCGCCCCCCCCCCGCCGCCGCGTACAAAC
TCGGCCAGTATGAGGGCGCGGCGGGGCAGCCTGGGGCCCGGGAGAATCGC
GGGGGCACGCAAGAAAGG back to top
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