mRNA_L-elsbetiae_contig10067.112.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10067.112.1
Unique NamemRNA_L-elsbetiae_contig10067.112.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10067.112.1 vs. uniprot
Match: D7G4Y8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Y8_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 3.200e-12
Identity = 35/72 (48.61%), Postives = 49/72 (68.06%), Query Frame = 2 
Query:  905 NKTKVILQFLLGVLEATGLEVIAARLALRQLLPPNVLPLGDITTDGGWSGLTAHQLWTLSSVLGLLFAPIFA 1120
            N  K I+ F+L  L++ G E++  R A R++LPPNV P+ DIT+ GGW+ LT  QLW +SS+   L APIF+
Sbjct:  130 NAGKKIMTFVLDALDSAGSEIVRGRFAWRRMLPPNVSPMADITSAGGWAALTGQQLWLVSSIFPFLVAPIFS 201
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BLAST of mRNA_L-elsbetiae_contig10067.112.1 vs. uniprot
Match: D7FZI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI4_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 4.400e-12
Identity = 35/72 (48.61%), Postives = 49/72 (68.06%), Query Frame = 2 
Query:  905 NKTKVILQFLLGVLEATGLEVIAARLALRQLLPPNVLPLGDITTDGGWSGLTAHQLWTLSSVLGLLFAPIFA 1120
            N  K I+ F+L  L++ G E++  R A R++LPPNV P+ DIT+ GGW+ LT  QLW +SS+   L APIF+
Sbjct:  235 NAGKKIMTFVLDALDSAGSEIVRGRFAWRRMLPPNVSPMADITSAGGWAALTGQQLWLVSSIFPFLVAPIFS 306
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BLAST of mRNA_L-elsbetiae_contig10067.112.1 vs. uniprot
Match: D7FWW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW9_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 2.540e-11
Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 2 
Query:  905 NKTKVILQFLLGVLEATGLEVIAARLALRQLLPPNVLPLGDITTDGGWSGLTAHQLWTLSSVLGLLFAPIFADASSM 1135
            N  K I+ F++  L+  G E++ AR A  ++LPPNV P+ DIT+ GGWS LT  QLW +SS    L APIF+   ++
Sbjct:  141 NSGKKIMGFVMDALDPAGSEIVRARFAWCRMLPPNVSPMADITSAGGWSALTGQQLWLVSSSFPFLLAPIFSSPDNL 217
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10067.112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G4Y8_ECTSI3.200e-1248.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZI4_ECTSI4.400e-1248.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWW9_ECTSI2.540e-1145.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10067contigL-elsbetiae_contig10067:1426..2892 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1467
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10067.112.1prot_L-elsbetiae_contig10067.112.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10067 2252..2626 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815239.2680824-UTR-L-elsbetiae_contig10067:1425..22511622815239.2680824-UTR-L-elsbetiae_contig10067:1425..2251Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10067 1426..2251 +
1691682789.429926-UTR-L-elsbetiae_contig10067:1425..22511691682789.429926-UTR-L-elsbetiae_contig10067:1425..2251Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10067 1426..2251 +
1622815239.2884214-UTR-L-elsbetiae_contig10067:2626..28921622815239.2884214-UTR-L-elsbetiae_contig10067:2626..2892Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10067 2627..2892 +
1691682789.447667-UTR-L-elsbetiae_contig10067:2626..28921691682789.447667-UTR-L-elsbetiae_contig10067:2626..2892Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10067 2627..2892 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815239.2784438-CDS-L-elsbetiae_contig10067:2251..26261622815239.2784438-CDS-L-elsbetiae_contig10067:2251..2626Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10067 2252..2626 +
1691682789.4397182-CDS-L-elsbetiae_contig10067:2251..26261691682789.4397182-CDS-L-elsbetiae_contig10067:2251..2626Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10067 2252..2626 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10067.112.1

>prot_L-elsbetiae_contig10067.112.1 ID=prot_L-elsbetiae_contig10067.112.1|Name=mRNA_L-elsbetiae_contig10067.112.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=125bp
MISCIPSPALTIVNRPLPRYKLHVPQNKTKVILQFLLGVLEATGLEVIAA
RLALRQLLPPNVLPLGDITTDGGWSGLTAHQLWTLSSVLGLLFAPIFADA
SSMVCVYKLQKNYIACNLSHVLTF*
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mRNA from alignment at L-elsbetiae_contig10067:1426..2892+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10067.112.1 ID=mRNA_L-elsbetiae_contig10067.112.1|Name=mRNA_L-elsbetiae_contig10067.112.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1467bp|location=Sequence derived from alignment at L-elsbetiae_contig10067:1426..2892+ (Laminarionema elsbetiae ELsaHSoW15)
CTCGAAAATTCCACGCCCTTTCAAAACAGCCGGGCTACATCCCTTTCTTG
ATTGACGCAAAAACCACAGCGTGGGGCTCCGGCGCGTGGCTTGAAATATT
CATCCGATTGGCCCAAAAAAGAACGGCTGACAACATCGCTCGTGTGCACC
AGAAAATCGAAAGCGTGGCTCATAGCTATCTGCTGCTGCTACCAAGGACA
TGCGGCGGCCCCCACACACCATATCAGTAGACACTCCCAGCATCTTCCGC
CGTTCTTGCCTGTGAGGGGCGAGCTATCTGATCTCTTAAACACCAACTTG
GCAGTTACCTGCCTCTGACAGTCCTGTTGTTGTTGTTGTTGTTGTTGTCT
TCACATTAAAAAACCATCCCGGTCTCGTCTCTATCCAGTACCTCCTTCTG
TCTCAACATCAATCTCTGTACTCATCCTGTCACTCAACACGGTCAATTTC
CGTGGTCACAAGCTAACTTACCTAAAATGTGGAATCGGTGATTTTGGCAT
CTTCGGAGAGGAAAATCTCCGCCATCAAGACAGCTAGACATTAATGGCTG
GTACATGTTACTCTATACAGGAAACTGCGAACTGTGGCGTTGGAGTGGGT
CGAGGAGTATAGCAGCGGAATGCTAAGGACCGAACTGTAAAGGGGAGCTT
TTGGGAGGGTCCGTGCACTCGGTTCTCGCATACCTCAAAAAAGGGTGCAT
TCAAAAAATCAATCAAATCGTGCTCGTCACTGAGACCCTGGATCCAAAAT
ACACTGCCTACCCGCCACCTTAAACTGTAAAAGCAATTCGTGAGCCCCCA
CTCCCTAAAGTATATGGTAAACTCGGATGATCTCTTGCATACCCAGCCCA
GCTCTTACGATCGTGAACCGCCCTCTGCCTCGTTACAAACTGCATGTTCC
GCAGAACAAGACCAAGGTCATACTTCAATTTTTGCTCGGCGTCCTGGAAG
CCACCGGACTCGAGGTCATCGCCGCCAGGCTGGCGCTTCGCCAGCTACTC
CCCCCGAACGTGTTGCCCCTGGGAGACATCACGACAGACGGCGGGTGGTC
GGGGCTCACGGCTCACCAGCTTTGGACTTTGTCAAGCGTCCTTGGGCTTC
TCTTTGCGCCGATTTTCGCCGACGCTAGCTCGATGGTGTGTGTGTATAAA
TTGCAGAAAAATTACATTGCATGCAACTTGTCACATGTGCTGACATTTTG
ATATCGAATACATACTACGTCGTCTTCTTTCCGCGTTTCGAGTGCTCCCG
CGACGTTGTACTAGACCCTGAAGCGGGGGAGGTTTTTTCGCGTCATTACA
ATAACAAACAGGCCGTTATGCAAAAATACCCGCAGTAAGTAGGGCTCGCA
TGTGTGCCGTGGTGGTCAAAGTCGGGCTCGTGTGTGTGTGTGCTGAGTTG
AAAATATGCACCAACCGCGAAGTGTGGGCTCGCAACGCATGCTTGGGTTC
TTCACCACGAGGAAACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10067:1426..2892+

>mRNA_L-elsbetiae_contig10067.112.1 ID=mRNA_L-elsbetiae_contig10067.112.1|Name=mRNA_L-elsbetiae_contig10067.112.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=750bp|location=Sequence derived from alignment at L-elsbetiae_contig10067:1426..2892+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATCTCTTGCATACCCAGCCCAGCTCTTACGATCGTGAACCGCCCTCT
GCCTCGTTACAAACTGCATGTTCCGCAGAACAAGACCAAGGTCATACTTC
AATTTTTGCTCGGCGTCCTGGAAGCCACCGGACTCGAGGTCATCGCCGCC
AGGCTGGCGCTTCGCCAGCTACTCCCCCCGAACGTGTTGCCCCTGGGAGA
CATCACGACAGACGGCGGGTGGTCGGGGCTCACGGCTCACCAGCTTTGGA
CTTTGTCAAGCGTCCTTGGGCTTCTCTTTGCGCCGATTTTCGCCGACGCT
AGCTCGATGGTGTGTGTGTATAAATTGCAGAAAAATTACATTGCATGCAA
CTTGTCACATGTGCTGACATTTTGAATGATCTCTTGCATACCCAGCCCAG
CTCTTACGATCGTGAACCGCCCTCTGCCTCGTTACAAACTGCATGTTCCG
CAGAACAAGACCAAGGTCATACTTCAATTTTTGCTCGGCGTCCTGGAAGC
CACCGGACTCGAGGTCATCGCCGCCAGGCTGGCGCTTCGCCAGCTACTCC
CCCCGAACGTGTTGCCCCTGGGAGACATCACGACAGACGGCGGGTGGTCG
GGGCTCACGGCTCACCAGCTTTGGACTTTGTCAAGCGTCCTTGGGCTTCT
CTTTGCGCCGATTTTCGCCGACGCTAGCTCGATGGTGTGTGTGTATAAAT
TGCAGAAAAATTACATTGCATGCAACTTGTCACATGTGCTGACATTTTGA
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