mRNA_L-elsbetiae_contig10029.74.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10029.74.1
Unique NamemRNA_L-elsbetiae_contig10029.74.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig10029.74.1 vs. uniprot
Match: A0A395GJF2_9EURO (Ankyrin n=1 Tax=Aspergillus ibericus CBS 121593 TaxID=1448316 RepID=A0A395GJF2_9EURO)

HSP 1 Score: 55.8 bits (133), Expect = 1.760e-7
Identity = 40/96 (41.67%), Postives = 51/96 (53.12%), Query Frame = 1
Query:   28 AWDNRLGAVEELLAAGANVDIREKRYPRHSALAMAASLGHVDVVRALVRHGSSVSLSCGGGYTALHAAAFDDRADGDNSDVVRVLLEAGANMEAKT 315
            AWD     V+ +L  GANV+     + RH+ L  AA L    +VR L+  G+   L    G TALH AA     +G   +VV VLLE GAN+EA T
Sbjct:   16 AWDP---VVQLMLEKGANVNRHGYVFIRHTPLTYAAILNRPSIVRRLLDAGADTDLMTNDGLTALHVAA-----EGCYLEVVLVLLEKGANIEAVT 103          
BLAST of mRNA_L-elsbetiae_contig10029.74.1 vs. uniprot
Match: D7G6Z8_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Z8_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 1.650e-6
Identity = 38/96 (39.58%), Postives = 53/96 (55.21%), Query Frame = 1
Query:   55 EELLAAGANVDIREKRYPRHSALAMAASLGHVDVVRALVRHGSSVSLSCGGGYTALHAAAFDDRADGDNSDVVRVLLEAGANMEAKTL--TYYTPL 336
            +E L AGA  D R      +    +AA  GH ++++A +  G+ V  + G G+TALH AA    +  DN   +RVLLEAG N+ AK    + YTPL
Sbjct:   98 QEALTAGA--DSRRPTLGHYFPFDIAARRGHANILKAFLETGTEVVAADGNGWTALHGAASGIPSL-DNRGTIRVLLEAGVNVNAKATCRSLYTPL 190          
BLAST of mRNA_L-elsbetiae_contig10029.74.1 vs. uniprot
Match: A0A4Y8CVW4_9HELO (NACHT domain-containing protein n=15 Tax=Sclerotiniaceae TaxID=28983 RepID=A0A4Y8CVW4_9HELO)

HSP 1 Score: 54.7 bits (130), Expect = 2.700e-6
Identity = 36/91 (39.56%), Postives = 54/91 (59.34%), Query Frame = 1
Query:   49 AVEELLAAGANVDIREKRYPRHSALAMAASLGHVD---VVRALVRHGSSVSLSCGGGYTALHAAAFDDRADGDNSDVVRVLLEAGANMEAK 312
            A+++LLAAGA VD  +  Y   +AL  AAS GH +   +V+ L+ HG+ V+  C G    +H+A            V+++L+EAGAN+EAK
Sbjct:  848 AIKKLLAAGAEVDAGKDTYSG-TALVRAASSGHKNDALIVKELILHGADVNAVCDGETVLMHSAL--------RPPVMKLLIEAGANIEAK 929          
BLAST of mRNA_L-elsbetiae_contig10029.74.1 vs. uniprot
Match: A0A1B4V0S4_9GAMM (Ankyrin repeat protein putative n=2 Tax=Sulfurifustis variabilis TaxID=1675686 RepID=A0A1B4V0S4_9GAMM)

HSP 1 Score: 52.8 bits (125), Expect = 4.770e-6
Identity = 42/104 (40.38%), Postives = 60/104 (57.69%), Query Frame = 1
Query:   28 AWDNRLGAVEELLAAGANVDIREKRYPR-HSALAMAASLGHVDVVRALVRHGSSVSLSCGGGYTALHAAAFDDRADGDNSDVVRVLLEAGANMEAKTLTYYTPL 336
            A   ++  V+ELL  GANV+ +EK     ++AL  AAS GH  +V+ L+ +G+SV+    G  T L  AA+     G   D V+VLLEAGA+  AK  + +T L
Sbjct:   19 ARKGKIDKVKELLEKGANVNAKEKVTGEGYTALFHAASYGHTAIVKLLIENGASVN-ERPGRNTPLIIAAW-----GGYPDTVQVLLEAGADPNAKADSGWTAL 116          
BLAST of mRNA_L-elsbetiae_contig10029.74.1 vs. uniprot
Match: C3ZSW4_BRAFL (MYND-type domain-containing protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZSW4_BRAFL)

HSP 1 Score: 51.6 bits (122), Expect = 1.710e-5
Identity = 38/122 (31.15%), Postives = 59/122 (48.36%), Query Frame = 1
Query:   43 LGAVEELLAAGANVDIREKRYPRH---SALAMAASLGHVDVVRALVRHGSSVSLSCGGGYTALHAAAFDDR---------------------ADGDNSDVVRVLLEAGANMEAKTLTYYTPL 336
            L  V+  L AGA++D  E         +AL +A  LGHV++VR L+R G+S+       +T LH AA++                        D  + D+VR+LL  GA++  +T + +TPL
Sbjct:   18 LEGVKAALEAGADIDYEEPASNGTLIGTALFIACDLGHVNIVRLLLRKGASLVKRTFNAFTPLHGAAYEGADIDYEEPASNATLIGTALFIACDLGHVDIVRLLLRKGASLVKRTFSAFTPL 139          
BLAST of mRNA_L-elsbetiae_contig10029.74.1 vs. uniprot
Match: A0A8H3IJ40_9LECA (Uncharacterized protein n=1 Tax=Imshaugia aleurites TaxID=172621 RepID=A0A8H3IJ40_9LECA)

HSP 1 Score: 52.0 bits (123), Expect = 2.210e-5
Identity = 40/104 (38.46%), Postives = 49/104 (47.12%), Query Frame = 1
Query:   52 VEELLAAGANVDIREKRYPRHSALAMAASLGHVDVVRALVRHGSSVSLSCG-----------GGYTALHAAAFDDRADGDNSDVVRVLLEAGANMEAKTLTYYT 330
            VE LL  GA VD         +AL +AA  GH  VV  L+ HG+ +   C             G T LH AA  D   G    VVR+LLE GAN+ A++L   T
Sbjct:  257 VEILLGEGAEVDWIGSE--GKTALHLAAQYGHKRVVEILLDHGADIEAHCEPFGTPLMIQHRAGNTPLHWAAAGDDTGGRQESVVRLLLERGANVNARSLRLRT 358          
BLAST of mRNA_L-elsbetiae_contig10029.74.1 vs. uniprot
Match: A0A4P6WXQ7_HYDPS (Ankyrin repeats (3 copies) n=4 Tax=Comamonadaceae TaxID=80864 RepID=A0A4P6WXQ7_HYDPS)

HSP 1 Score: 50.8 bits (120), Expect = 3.790e-5
Identity = 32/74 (43.24%), Postives = 48/74 (64.86%), Query Frame = 1
Query:  115 SALAMAASLGHVDVVRALVRHGSSVSLSCGGGYTALHAAAFDDRADGDNSDVVRVLLEAGANMEAKTLTYYTPL 336
            S L +AA  GH+D+ R L+R G+ V+     G+T LH AA   RA+ D++D+VR+LLE  A ++A++    TPL
Sbjct:   98 SPLMIAAIKGHLDIARQLIRRGAEVNKP---GWTPLHYAA--SRAEPDSADMVRLLLEHHAYIDAESPNRSTPL 166          
BLAST of mRNA_L-elsbetiae_contig10029.74.1 vs. uniprot
Match: A0A7S1TKZ3_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TKZ3_9RHOD)

HSP 1 Score: 50.4 bits (119), Expect = 8.030e-5
Identity = 32/84 (38.10%), Postives = 50/84 (59.52%), Query Frame = 1
Query:   40 RLGAVEELLAAGANVDIREKRYPRHSALAMAASLGHVDVVRALVRHGSSVSLSCGGGYTALHAAAFDDRADGDNSDVVRVLLEA 291
            R+  V++LLAAGA  D+ +  Y + +AL +AAS GH +V RAL+RHG+  +     G   L     DD   G + ++ ++L+EA
Sbjct:  465 RIDLVQKLLAAGARTDVAD--YDKRTALHLAASEGHTNVARALLRHGADPNAKDRWGNIPL-----DDAVSGGHIEMQQLLMEA 541          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10029.74.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A395GJF2_9EURO1.760e-741.67Ankyrin n=1 Tax=Aspergillus ibericus CBS 121593 Ta... [more]
D7G6Z8_ECTSI1.650e-639.58Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A4Y8CVW4_9HELO2.700e-639.56NACHT domain-containing protein n=15 Tax=Sclerotin... [more]
A0A1B4V0S4_9GAMM4.770e-640.38Ankyrin repeat protein putative n=2 Tax=Sulfurifus... [more]
C3ZSW4_BRAFL1.710e-531.15MYND-type domain-containing protein n=1 Tax=Branch... [more]
A0A8H3IJ40_9LECA2.210e-538.46Uncharacterized protein n=1 Tax=Imshaugia aleurite... [more]
A0A4P6WXQ7_HYDPS3.790e-543.24Ankyrin repeats (3 copies) n=4 Tax=Comamonadaceae ... [more]
A0A7S1TKZ3_9RHOD8.030e-538.10Hypothetical protein n=1 Tax=Erythrolobus australi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10029contigL-elsbetiae_contig10029:2152..2487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue3.1e-08
Seed eggNOG ortholog2880.D7FHH2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size336
Cds size336
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815236.2644656-CDS-L-elsbetiae_contig10029:2151..24871622815236.2644656-CDS-L-elsbetiae_contig10029:2151..2487Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10029 2152..2487 -
1691682787.191428-CDS-L-elsbetiae_contig10029:2151..24871691682787.191428-CDS-L-elsbetiae_contig10029:2151..2487Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10029 2152..2487 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10029.74.1prot_L-elsbetiae_contig10029.74.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10029 2152..2487 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10029.74.1

>prot_L-elsbetiae_contig10029.74.1 ID=prot_L-elsbetiae_contig10029.74.1|Name=mRNA_L-elsbetiae_contig10029.74.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
MVQRHSTGRAWDNRLGAVEELLAAGANVDIREKRYPRHSALAMAASLGHV
DVVRALVRHGSSVSLSCGGGYTALHAAAFDDRADGDNSDVVRVLLEAGAN
MEAKTLTYYTPL
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mRNA from alignment at L-elsbetiae_contig10029:2152..2487-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10029.74.1 ID=mRNA_L-elsbetiae_contig10029.74.1|Name=mRNA_L-elsbetiae_contig10029.74.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=336bp|location=Sequence derived from alignment at L-elsbetiae_contig10029:2152..2487- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGCAACGCCACTCTACCGGGCGGGCGTGGGACAATCGCCTCGGGGC CGTCGAAGAGCTCTTGGCTGCTGGTGCCAACGTCGACATCCGCGAGAAAC GTTACCCACGCCACTCTGCACTCGCTATGGCGGCGTCCCTAGGCCATGTG GATGTCGTGAGAGCACTTGTGCGGCACGGAAGCAGCGTCTCGTTATCTTG CGGTGGTGGCTACACGGCTCTGCACGCCGCCGCTTTCGATGACAGGGCTG ATGGCGACAACAGCGACGTAGTCCGTGTGTTACTGGAAGCCGGCGCTAAC ATGGAAGCCAAAACTCTCACTTACTATACTCCGCTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10029:2152..2487-

>mRNA_L-elsbetiae_contig10029.74.1 ID=mRNA_L-elsbetiae_contig10029.74.1|Name=mRNA_L-elsbetiae_contig10029.74.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig10029:2152..2487- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGCAACGCCACTCTACCGGGCGGGCGTGGGACAATCGCCTCGGGGC
CGTCGAAGAGCTCTTGGCTGCTGGTGCCAACGTCGACATCCGCGAGAAAC
GTTACCCACGCCACTCTGCACTCGCTATGGCGGCGTCCCTAGGCCATGTG
GATGTCGTGAGAGCACTTGTGCGGCACGGAAGCAGCGTCTCGTTATCTTG
CGGTGGTGGCTACACGGCTCTGCACGCCGCCGCTTTCGATGACAGGGCTG
ATGGCGACAACAGCGACGTAGTCCGTGTGTTACTGGAAGCCGGCGCTAAC
ATGGAAGCCAAAACTCTCACTTACTATACTCCGCTAATGGTGCAACGCCA
CTCTACCGGGCGGGCGTGGGACAATCGCCTCGGGGCCGTCGAAGAGCTCT
TGGCTGCTGGTGCCAACGTCGACATCCGCGAGAAACGTTACCCACGCCAC
TCTGCACTCGCTATGGCGGCGTCCCTAGGCCATGTGGATGTCGTGAGAGC
ACTTGTGCGGCACGGAAGCAGCGTCTCGTTATCTTGCGGTGGTGGCTACA
CGGCTCTGCACGCCGCCGCTTTCGATGACAGGGCTGATGGCGACAACAGC
GACGTAGTCCGTGTGTTACTGGAAGCCGGCGCTAACATGGAAGCCAAAAC
TCTCACTTACTATACTCCGCTA
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