mRNA_L-elsbetiae_contig10025.73.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10025.73.1
Unique NamemRNA_L-elsbetiae_contig10025.73.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig10025.73.1 vs. uniprot
Match: D8LMU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMU4_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 1.490e-29
Identity = 60/81 (74.07%), Postives = 65/81 (80.25%), Query Frame = 1 
Query:    1 QAADLGDPESYFYLALLQSAGLDGGDPGAGADQARVWALCGTHADNTNAHLLLAYRLHSGNEH--GGETCQEAVQFYQLAV 237
            QAADLGDP+SYFYLALLQSAGL GG+ GAG DQAR WALCGTHA NT+A+LLL YR  +G E    G TC EAV FYQLAV
Sbjct:  173 QAADLGDPDSYFYLALLQSAGLHGGEAGAGKDQARTWALCGTHAANTDANLLLGYRFLAGLEERKDGITCNEAVHFYQLAV 253
[Close]
BLAST of mRNA_L-elsbetiae_contig10025.73.1 vs. uniprot
Match: A0A6H5JWA9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA9_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 2.460e-21
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    1 QAADLGDPESYFYLALLQSAGLDGGDPGAGADQARVWALCGTHADNTNAHLLLAY 165
            QAADLGDP+SYFYLALLQSAGL GG+ GAG DQAR WALCGTHA NT+A+LLL +
Sbjct:  289 QAADLGDPDSYFYLALLQSAGLHGGEAGAGKDQARTWALCGTHAANTDANLLLGF 343
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10025.73.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMU4_ECTSI1.490e-2974.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWA9_9PHAE2.460e-2180.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10025contigL-elsbetiae_contig10025:3683..5447 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size238
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815236.213349-CDS-L-elsbetiae_contig10025:3683..37591622815236.213349-CDS-L-elsbetiae_contig10025:3683..3759Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10025 3684..3759 -
1691682787.1683326-CDS-L-elsbetiae_contig10025:3683..37591691682787.1683326-CDS-L-elsbetiae_contig10025:3683..3759Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10025 3684..3759 -
1622815236.2250054-CDS-L-elsbetiae_contig10025:5286..54471622815236.2250054-CDS-L-elsbetiae_contig10025:5286..5447Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10025 5287..5447 -
1691682787.1789644-CDS-L-elsbetiae_contig10025:5286..54471691682787.1789644-CDS-L-elsbetiae_contig10025:5286..5447Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10025 5287..5447 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10025.73.1prot_L-elsbetiae_contig10025.73.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10025 3684..5447 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10025.73.1

>prot_L-elsbetiae_contig10025.73.1 ID=prot_L-elsbetiae_contig10025.73.1|Name=mRNA_L-elsbetiae_contig10025.73.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=79bp
QAADLGDPESYFYLALLQSAGLDGGDPGAGADQARVWALCGTHADNTNAH
LLLAYRLHSGNEHGGETCQEAVQFYQLAV
back to top

mRNA from alignment at L-elsbetiae_contig10025:3683..5447-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10025.73.1 ID=mRNA_L-elsbetiae_contig10025.73.1|Name=mRNA_L-elsbetiae_contig10025.73.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1765bp|location=Sequence derived from alignment at L-elsbetiae_contig10025:3683..5447- (Laminarionema elsbetiae ELsaHSoW15)
CAGGCGGCCGATCTTGGAGACCCGGAGAGCTACTTTTACCTGGCTCTGCT
GCAGTCTGCGGGGCTCGACGGGGGAGACCCGGGCGCGGGGGCAGACCAGG
CGCGGGTGTGGGCCTTGTGCGGCACGCACGCCGACAATACCAACGCCCAC
CTTCTTCTTGCGTGAGTGGCAGACACTATTGGAGAGTGTACCGTAACCAT
GCGGGTTATATATAGCACCCCCCCCCCCACCCCCCCTCCCTCCTCCCCGC
CCCCCCGGAACGGATTTCAAAGCCCGGTTACTCCGTACTTAACGAAGAAG
AGGATGCAAACACCGAACCACACGTTTTCCAGACAGCTCTCGACGTGCTC
GTTCCGATGCCACCCTTTTTCAGTGCCGTCGCCCTCTTTTCATCGAGGCG
TCGTAGAGTGCCAAAAACCGATCCCGGGGAGGGTGGGTAGGGTGGGCGCG
ATGACCCGCATGCTTACGGTATGATGGAAGCGTGCAGGCCGAAAGTATTT
CCTTGTCACATATATATGTATACATATATTATAAATGCAAATATATTGTG
ATTTAAACGCGGTGCGCCGAGTGCTGCGTTCATTTCGTACCGATTGCCGC
GTGCGCTTTGAGCCGAATGCTTGCGTACGCGGTGGTTGGTGGTGCACCGA
ATGCTCGCGTTGTATACCGTAGGTGACATAAGATAAGACACCCCCTGGAC
CGATATTGAAAGCTTGGTTACTCCGCAACGAATACGATTCTAACCACAAA
CGCAACATTTTCGGACAGCTCTCGACGAGATCTTTCCAACGCCGCTCTTT
TCGGGACTGACGCTCTGCTTGCAGTGGAGTACTTGAGCTTTGAAAATCGG
TTCAGGGGGTGTCTTATCTTATGTCACCTACGGTATAATGCTGCGTGCGC
TTTGTTGCCTGGGCGCGCTGTACCGACGTGGGTTCGATCGATTGCACTCG
TATTTCGTTGTTTGTGCTCGGCTCTCTCTCTCTCTCTCTCTCTCTTGCTA
TCTCTCTCTGTGCCGGATGTTTTGGGCGTTTTTGGTGTGGTGTGTGTTTG
TGTGTGTTTCCGATATTCGTCTTGGAGTTTGGCACCAAAGAGAGCACGCG
AGTACCGTAAAATCATCTGAAAACGTCCCTCTCCGTGAGGTCGCCCCCCC
CCCGCCCCCCTCCCCTAAAAAAATAAAAGCATAAACGGCCAGGTGCACCC
CAAGACCCTTTTGAGAACAACACCCCCAGGACGTGTTTTTTAATGGCTCA
CATTTTCCCGTGCCCCCGGGAGGGGGGGGGGGGGGCGTTTTCCTCAAGGG
GTATGTATCTCCGTAGATGGGAGCGGCCCCGTCGTCCTCGGGGTCTGGTC
GGAGATCTCGGCACTTGGGGCACAGGGTCCGGACTTGTCGCATTAATGCT
CGGAAGCAACCGGCGCTTTGTGTGATCCTCTTTTGCAAAGGACCCGCGGA
CCTATCGCACTGATGCTTGGAAGGCAACCTGCACTTTTGCGTAACCCTCC
TTTGCACAGGATTCGCGGACTTACACAGCATTGATGCTTGGAAAGCAACC
CGCGCTTTTGTGTGACCCTCTCTTTTTCCTGGCCTATCTATCGCATTGGT
GCTTGGAAAGCAACCTGCGCTTTTGCGTGATCCTCTCTACCTCTCCCCCA
CCTGCTGTCCTTGACGCTCTCCGTGTTGGATTACCTAGATACCGCCTTCA
CTCCGGTAACGAGCACGGAGGGGAGACTTGCCAAGAGGCCGTCCAGTTCT
ACCAGCTGGCCGTGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig10025:3683..5447-

>mRNA_L-elsbetiae_contig10025.73.1 ID=mRNA_L-elsbetiae_contig10025.73.1|Name=mRNA_L-elsbetiae_contig10025.73.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=474bp|location=Sequence derived from alignment at L-elsbetiae_contig10025:3683..5447- (Laminarionema elsbetiae ELsaHSoW15)
CAGGCGGCCGATCTTGGAGACCCGGAGAGCTACTTTTACCTGGCTCTGCT
GCAGTCTGCGGGGCTCGACGGGGGAGACCCGGGCGCGGGGGCAGACCAGG
CGCGGGTGTGGGCCTTGTGCGGCACGCACGCCGACAATACCAACGCCCAC
CTTCTTCTTGCCAGGCGGCCGATCTTGGAGACCCGGAGAGCTACTTTTAC
CTGGCTCTGCTGCAGTCTGCGGGGCTCGACGGGGGAGACCCGGGCGCGGG
GGCAGACCAGGCGCGGGTGTGGGCCTTGTGCGGCACGCACGCCGACAATA
CCAACGCCCACCTTCTTCTTGCATACCGCCTTCACTCCGGTAACGAGCAC
GGAGGGGAGACTTGCCAAGAGGCCGTCCAGTTCTACCAGCTGGCCGTGAT
ACCGCCTTCACTCCGGTAACGAGCACGGAGGGGAGACTTGCCAAGAGGCC
GTCCAGTTCTACCAGCTGGCCGTG
back to top