mRNA_L-elsbetiae_contig10024.71.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10024.71.1
Unique NamemRNA_L-elsbetiae_contig10024.71.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10024.71.1 vs. uniprot
Match: A0A6H5JXZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ5_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 9.400e-36
Identity = 68/153 (44.44%), Postives = 97/153 (63.40%), Query Frame = 1 
Query:   91 FEVGNHDWPCLDAINCPSGFLKLRNRKSDGKPYVTCDHNSWRDSSTCKVALSMLNASKDHPHPCQLCLQDVGGSPSIGNPTDEKDDRGYTIWENFHGVFSHCAGAKTADGKTFKNATPASGDVVGKGCLCWDGKKNVAKDINLGCTGKIKAGE 549
            F  GN  WPC  +I C  G LK    K++G  +  CD    +DS+TC+V+ S+L+A    P  CQLCL  VGG+PS+G  + EK+ +G   W N H  ++ C GAKT+DG+ +KNAT A+GD+VG+ C C +   +V +DI  GCTG+I+ G+
Sbjct:   21 FIAGNPLWPC-PSIVCVPGLLKAV-PKTNGGLFSPCDQKDSQDSTTCQVSCSILSARGSDPPICQLCLTSVGGTPSLGVLSGEKNSQGRDEWLNIHACWTICCGAKTSDGEKYKNATLATGDIVGRACKCSNPASDV-EDITHGCTGEIEEGD 170
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BLAST of mRNA_L-elsbetiae_contig10024.71.1 vs. uniprot
Match: A0A6H5JLP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP4_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.130e-35
Identity = 76/175 (43.43%), Postives = 103/175 (58.86%), Query Frame = 1 
Query:   25 RSSPLKRKSAEKPTHGAKPTTLFEVGNHDWPCLDAINCPSGFLKLRNRKSDGKPYVTCDHNSWRDSSTCKVALSMLNASKDHPHPCQLCLQDVGGSPSIGNPTDEKDDRGYTIWENFHGVFSHCAGAKTADGKTFKNATPASGDVVGKGCLCWDGKKNVAKDINLGCTGKIKAGE 549
            R SPLK+   E+P+   +    F  GN  WPC    N   G LK +  K+ G  +  CD     D +TC+V+ S L+    +P  C+LCL  VGG+PS+G  + EK D+G   W N H V+  CAGA T+DG  +KNAT A+G++VG+ C C+D +KNV  DI  GCTG I+ GE
Sbjct:    3 RGSPLKKIRTEEPSSSKR---KFLAGNPLWPCPS--NYCDGLLK-KIPKTKGGFFTPCDQKQSNDPNTCQVSCSFLSERGPNPVKCELCLTPVGGTPSLGVLSGEKTDQGRGEWLNIHAVWKLCAGATTSDGGKYKNATLATGEIVGRPCSCFDPEKNV-DDIKEGCTGDIQEGE 170
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BLAST of mRNA_L-elsbetiae_contig10024.71.1 vs. uniprot
Match: D7G4Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Z8_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 1.100e-28
Identity = 57/117 (48.72%), Postives = 77/117 (65.81%), Query Frame = 1 
Query:   10 MSALSRSSPLKRKSAEKPTHGAKPTTLFEVGNHDWPCLDAINCPSGFLKLRNRKSDGKPYVTCDHNSWRDSSTCKVALSMLNASKDHPHPCQLCLQDVGGSPSIGNPTDEKDDRGYT 360
            M+ LS++SPLKRK  +      KP  L  +G   WPC D  N   G LK+  +K+ G  ++TCD N W+D ++CKV+LS+L  S+DHPH C LCL+DVGG+PS+G  T E D RGY+
Sbjct:  624 MNTLSKASPLKRKQQQASAPIVKPRALLTLGVEGWPCPDD-NSTDGLLKVVKKKNGGD-FLTCDQNIWKDETSCKVSLSLLKPSQDHPHECSLCLKDVGGTPSLGTDTGETDSRGYS 738
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BLAST of mRNA_L-elsbetiae_contig10024.71.1 vs. uniprot
Match: A0A6H5KDP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDP4_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 4.010e-8
Identity = 45/156 (28.85%), Postives = 68/156 (43.59%), Query Frame = 1 
Query:   31 SPLKRKSAEKPTHGAKPTTLFEVGNHDWPCLDAINCP-SGFLKLRNRKSDGKPYVTCDHNSWRDSSTCKVALSMLNASK-----DHPHPCQLCLQDVGGSPSIGNPTDEKDD-RGYTIWENFHGVFSHCAGAKTADGKTFKN----ATPASGDVVG 465
            SP K+   E+ + GA       VG         + CP    + L+     G+P++ C  N   D  +C  + ++    +          CQ+C      +PSIG PT EK+   G  ++EN H  F HC G +T D  + K+     T A+G VVG
Sbjct:    9 SPAKKAKPEQTSDGAGSGGFKTVGE----VYPGLVCPLDQKVLLKKYTKTGRPWIVCSGNVQNDPDSCHFSANLFGRDRVKEGDKSKIACQICDVPAEFTPSIGEPTGEKNPLTGKPVFENTHVFFPHCWGKQTEDPVSGKSLLVHCTAATGAVVG 160
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10024.71.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JXZ5_9PHAE9.400e-3644.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLP4_9PHAE1.130e-3543.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4Z8_ECTSI1.100e-2848.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDP4_9PHAE4.010e-828.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10024contigL-elsbetiae_contig10024:5764..7170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.6
Seed ortholog evalue9.2e-26
Seed eggNOG ortholog2880.D7G4Z8
Hectar predicted targeting categoryother localisation
EggNOG OGs2CZK4@1,2SARG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size549
Cds size540
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10024.71.1prot_L-elsbetiae_contig10024.71.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10024 5764..7161 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815236.0757022-CDS-L-elsbetiae_contig10024:5763..58471622815236.0757022-CDS-L-elsbetiae_contig10024:5763..5847Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10024 5764..5847 -
1691682787.0739217-CDS-L-elsbetiae_contig10024:5763..58471691682787.0739217-CDS-L-elsbetiae_contig10024:5763..5847Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10024 5764..5847 -
1622815236.087665-CDS-L-elsbetiae_contig10024:6114..62181622815236.087665-CDS-L-elsbetiae_contig10024:6114..6218Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10024 6115..6218 -
1691682787.0928953-CDS-L-elsbetiae_contig10024:6114..62181691682787.0928953-CDS-L-elsbetiae_contig10024:6114..6218Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10024 6115..6218 -
1622815236.0987477-CDS-L-elsbetiae_contig10024:6809..71611622815236.0987477-CDS-L-elsbetiae_contig10024:6809..7161Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10024 6810..7161 -
1691682787.1030874-CDS-L-elsbetiae_contig10024:6809..71611691682787.1030874-CDS-L-elsbetiae_contig10024:6809..7161Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10024 6810..7161 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815236.1079655-UTR-L-elsbetiae_contig10024:7161..71701622815236.1079655-UTR-L-elsbetiae_contig10024:7161..7170Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10024 7162..7170 -
1691682787.1236448-UTR-L-elsbetiae_contig10024:7161..71701691682787.1236448-UTR-L-elsbetiae_contig10024:7161..7170Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10024 7162..7170 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10024.71.1

>prot_L-elsbetiae_contig10024.71.1 ID=prot_L-elsbetiae_contig10024.71.1|Name=mRNA_L-elsbetiae_contig10024.71.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=180bp
MSALSRSSPLKRKSAEKPTHGAKPTTLFEVGNHDWPCLDAINCPSGFLKL
RNRKSDGKPYVTCDHNSWRDSSTCKVALSMLNASKDHPHPCQLCLQDVGG
SPSIGNPTDEKDDRGYTIWENFHGVFSHCAGAKTADGKTFKNATPASGDV
VGKGCLCWDGKKNVAKDINLGCTGKIKAGE
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mRNA from alignment at L-elsbetiae_contig10024:5764..7170-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10024.71.1 ID=mRNA_L-elsbetiae_contig10024.71.1|Name=mRNA_L-elsbetiae_contig10024.71.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1407bp|location=Sequence derived from alignment at L-elsbetiae_contig10024:5764..7170- (Laminarionema elsbetiae ELsaHSoW15)
CGAGTAGCCATGAGCGCGCTGTCGAGGAGTTCCCCGCTCAAGCGCAAGTC
AGCCGAGAAGCCTACACACGGCGCCAAGCCCACGACCCTCTTTGAGGTCG
GCAACCACGACTGGCCCTGTCTGGACGCCATAAACTGCCCGTCCGGGTTT
CTCAAGCTGCGGAACCGCAAGAGCGACGGCAAGCCATACGTCACCTGTGA
CCACAACTCCTGGAGGGACAGCAGCACCTGCAAGGTTGCCCTGTCTATGC
TGAACGCCAGCAAGGACCACCCCCACCCGTGCCAGCTCTGCTTGCAGGAC
GTCGGCGGGTCACCCTCCATCGGCAATCCCACGGACGAGAAGGACGACCG
CGGCTACACCAGTGAGTGGATGTTTTTTGTTTTGTGTGTGTGTGCTCTTT
GAGGGTCTGTTGTGATCAGGTTGTGCGCTTCCATGTTGGTTTGAGCAGAG
CTAGAGTAATGATGATTCCATCGTCGCCTAACCTGCACTACAAACCGTGT
CTCACGGAGGTGTTCTCACCAGTGAGTGGATGTTTTTTGTTTCGTGTGCG
TGTGTGCTTTTTGTTGAAGGTGGTGATGACCACGCTGCTACAATTTTTTG
TTTTCGTGTGTACTTTTTGTGGATGTGATGACCTCGTTGCTACAAATCAC
TAAACTAACAGCGTGATCGTCTAATGTGATCAGTTCGGCGCTTCCATGTT
TGAGCAGAGCTAGAGTAGTGATGATTCCACCGTCGCCTACACCAAAGCGT
TTTGGACTAAAATGATCTTCTACGTATATATGTAGCTGATGATGACGCAG
TGGTTGTGGATTCTGATGACGCAGTAGTGGTTGTGGAGTCAGAGAACGAA
CAGCATGTTTGGTTTTTTTTTATCACCATTTTCATACCCGACCACATGGA
AAAATGCCGACACGATGATCATTACACCTGCGTATTACCTTTTGTGTCTC
AGTTTGGGAGAACTTCCACGGCGTTTTTTCTCACTGCGCCGGTGCCAAGA
CGGCTGACGGAAAAACCTTCAAGAACGCGACCCCCGCAAGCGGCGACGTC
GTCGGCGTGAGTCTACGTCATTACAAATGTCGCCCGTTACTGTGTAACAG
TAGTTAGTTGTTGCTGAAATGGTTGGTCAACATGACTGTATTGCTACGTT
TGCATTTGTAGCTGTCACTGAAAGCACTGGGCGTCAACTAGAATGCACAG
GTTGGTCAAGATTACTGCTGTATTGCTACGTTTGCATAACCCCAAATATT
TATTTAAATGTTTAATTTTCGTCTTCCCCGCCCGGCAATTTTACCCTCTC
TTTGACACTGTTGGAAATTACAGAAAGGTTGCCTGTGCTGGGACGGCAAG
AAGAACGTCGCCAAGGACATCAACCTCGGCTGCACTGGCAAGATCAAGGC
CGGCGAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10024:5764..7170-

>mRNA_L-elsbetiae_contig10024.71.1 ID=mRNA_L-elsbetiae_contig10024.71.1|Name=mRNA_L-elsbetiae_contig10024.71.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1080bp|location=Sequence derived from alignment at L-elsbetiae_contig10024:5764..7170- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCGCGCTGTCGAGGAGTTCCCCGCTCAAGCGCAAGTCAGCCGAGAA
GCCTACACACGGCGCCAAGCCCACGACCCTCTTTGAGGTCGGCAACCACG
ACTGGCCCTGTCTGGACGCCATAAACTGCCCGTCCGGGTTTCTCAAGCTG
CGGAACCGCAAGAGCGACGGCAAGCCATACGTCACCTGTGACCACAACTC
CTGGAGGGACAGCAGCACCTGCAAGGTTGCCCTGTCTATGCTGAACGCCA
GCAAGGACCACCCCCACCCGTGCCAGCTCTGCTTGCAGGACGTCGGCGGG
TCACCCTCCATCGGCAATCCCACGGACGAGAAGGACGACCGCGGCTACAC
CAATGAGCGCGCTGTCGAGGAGTTCCCCGCTCAAGCGCAAGTCAGCCGAG
AAGCCTACACACGGCGCCAAGCCCACGACCCTCTTTGAGGTCGGCAACCA
CGACTGGCCCTGTCTGGACGCCATAAACTGCCCGTCCGGGTTTCTCAAGC
TGCGGAACCGCAAGAGCGACGGCAAGCCATACGTCACCTGTGACCACAAC
TCCTGGAGGGACAGCAGCACCTGCAAGGTTGCCCTGTCTATGCTGAACGC
CAGCAAGGACCACCCCCACCCGTGCCAGCTCTGCTTGCAGGACGTCGGCG
GGTCACCCTCCATCGGCAATCCCACGGACGAGAAGGACGACCGCGGCTAC
ACCATTTGGGAGAACTTCCACGGCGTTTTTTCTCACTGCGCCGGTGCCAA
GACGGCTGACGGAAAAACCTTCAAGAACGCGACCCCCGCAAGCGGCGACG
TCGTCGGCTTTGGGAGAACTTCCACGGCGTTTTTTCTCACTGCGCCGGTG
CCAAGACGGCTGACGGAAAAACCTTCAAGAACGCGACCCCCGCAAGCGGC
GACGTCGTCGGCAAAGGTTGCCTGTGCTGGGACGGCAAGAAGAACGTCGC
CAAGGACATCAACCTCGGCTGCACTGGCAAGATCAAGGCCGGCGAAAAAG
GTTGCCTGTGCTGGGACGGCAAGAAGAACGTCGCCAAGGACATCAACCTC
GGCTGCACTGGCAAGATCAAGGCCGGCGAA
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