mRNA_L-elsbetiae_contig1002.67.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1002.67.1
Unique NamemRNA_L-elsbetiae_contig1002.67.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1002.67.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1002contigL-elsbetiae_contig1002:14794..15274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size483
Cds size339
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815235.791983-UTR-L-elsbetiae_contig1002:14793..149351622815235.791983-UTR-L-elsbetiae_contig1002:14793..14935Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1002 14794..14935 +
1691682786.8527782-UTR-L-elsbetiae_contig1002:14793..149351691682786.8527782-UTR-L-elsbetiae_contig1002:14793..14935Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1002 14794..14935 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815235.8033388-CDS-L-elsbetiae_contig1002:14935..152741622815235.8033388-CDS-L-elsbetiae_contig1002:14935..15274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1002 14936..15274 +
1691682786.8729727-CDS-L-elsbetiae_contig1002:14935..152741691682786.8729727-CDS-L-elsbetiae_contig1002:14935..15274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1002 14936..15274 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1002.67.1prot_L-elsbetiae_contig1002.67.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1002 14936..15274 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1002.67.1

>prot_L-elsbetiae_contig1002.67.1 ID=prot_L-elsbetiae_contig1002.67.1|Name=mRNA_L-elsbetiae_contig1002.67.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
MAWPVQGWLPQGWLPQVNSTCSGPHHLSISPRAQSFDAGRGGVRKSRCVG
GDRTEKAVCVFLPNNHTRGHGVARTRLAATRLATTSQLFSWDGGDNLRET
NREGLHNNQEDTR
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mRNA from alignment at L-elsbetiae_contig1002:14794..15274+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1002.67.1 ID=mRNA_L-elsbetiae_contig1002.67.1|Name=mRNA_L-elsbetiae_contig1002.67.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=481bp|location=Sequence derived from alignment at L-elsbetiae_contig1002:14794..15274+ (Laminarionema elsbetiae ELsaHSoW15)
GCCATGTGCGGCATGAATGATGACCATCAGTAAGATCCAGTTCGGTAACA
GGAGGAGGAGTAAGGAAAAGCCGTTGTATCGGCAGAGACAGGACAGAAAA
AGCCGTTTGTGCATTTCCTACTAAATAATCACACGCGTGGCCATGGCGTG
GCCCGTACAAGGTTGGCTGCCACAAGGCTGGCTACCACAAGTCAACAGCA
CATGTAGCGGACCACACCATCTATCAATCTCACCTCGTGCCCAATCCTTT
GACGCCGGGAGAGGAGGAGTAAGGAAAAGCCGCTGTGTCGGCGGAGACAG
GACAGAAAAAGCCGTTTGTGTATTCCTACCAAATAATCACACGCGTGGCC
ATGGCGTGGCCCGCACAAGGCTGGCTGCCACAAGGCTGGCTACCACAAGT
CAACTGTTTTCGTGGGATGGAGGTGACAACCTTCGTGAAACCAACCGAGA
AGGCCTGCACAACAATCAAGAGGACACACGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1002:14794..15274+

>mRNA_L-elsbetiae_contig1002.67.1 ID=mRNA_L-elsbetiae_contig1002.67.1|Name=mRNA_L-elsbetiae_contig1002.67.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig1002:14794..15274+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGTGGCCCGTACAAGGTTGGCTGCCACAAGGCTGGCTACCACAAGT
CAACAGCACATGTAGCGGACCACACCATCTATCAATCTCACCTCGTGCCC
AATCCTTTGACGCCGGGAGAGGAGGAGTAAGGAAAAGCCGCTGTGTCGGC
GGAGACAGGACAGAAAAAGCCGTTTGTGTATTCCTACCAAATAATCACAC
GCGTGGCCATGGCGTGGCCCGCACAAGGCTGGCTGCCACAAGGCTGGCTA
CCACAAGTCAACTGTTTTCGTGGGATGGAGGTGACAACCTTCGTGAAACC
AACCGAGAAGGCCTGCACAACAATCAAGAGGACACACGAATGGCGTGGCC
CGTACAAGGTTGGCTGCCACAAGGCTGGCTACCACAAGTCAACAGCACAT
GTAGCGGACCACACCATCTATCAATCTCACCTCGTGCCCAATCCTTTGAC
GCCGGGAGAGGAGGAGTAAGGAAAAGCCGCTGTGTCGGCGGAGACAGGAC
AGAAAAAGCCGTTTGTGTATTCCTACCAAATAATCACACGCGTGGCCATG
GCGTGGCCCGCACAAGGCTGGCTGCCACAAGGCTGGCTACCACAAGTCAA
CTGTTTTCGTGGGATGGAGGTGACAACCTTCGTGAAACCAACCGAGAAGG
CCTGCACAACAATCAAGAGGACACACGA
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