mRNA_L-elsbetiae_contig10017.65.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10017.65.1
Unique NamemRNA_L-elsbetiae_contig10017.65.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10017.65.1 vs. uniprot
Match: D7G8H6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8H6_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 1.150e-55
Identity = 112/177 (63.28%), Postives = 130/177 (73.45%), Query Frame = 1 
Query:    1 MKFCTSKPTLMLVAAFLWPSALAFTAPSIIAAGTTSRSRHGAMRAHVDHQPVPSAPEQVVATPDVIRAASRPQGARQAGSLERALQGAAMGAAAGFAGASGALAEYVDPDDVGEIVSSELPPMWVPLAVGVVLTLGISLLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMFKKKD 531
            MKF   + +L+++A  L  SA AFT PS++A   + ++   A++ H      P A  QV    DV+ A S+ Q  R  G  ERALQGA+  AA GFAGAS  LAEY+DPDDVGE+VSS+LPPMWVPLAVG VLTLGI LLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMFKKKD
Sbjct:    1 MKFGMGRASLVMLAIVLRRSAQAFTVPSMMAVRPSQQAH--ALQQH------PPASGQVFDATDVVPA-SKGQAPRPRGQFERALQGASFTAATGFAGASSVLAEYIDPDDVGEVVSSDLPPMWVPLAVGFVLTLGIGLLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMFKKKD 168
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BLAST of mRNA_L-elsbetiae_contig10017.65.1 vs. uniprot
Match: A0A836CD09_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD09_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.170e-20
Identity = 56/93 (60.22%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:  253 LQGAAMGAAAG-FAGASGALAEYVDPDDVGEIVSSELPPMWVPLAVGVVLTLGISLLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMFKKK 528
            L GAA  AA G  A A  A+A  VD + V   +  ELPPMWVPL +G V+  GI   Q SLG+VM+DEAKLG LSGARAAKQSAR R MFK+K
Sbjct:   14 LPGAAATAAFGALASAQAAIAVVVDEEQVVTSMRDELPPMWVPLVLGAVVLAGIGAQQLSLGNVMDDEAKLGGLSGARAAKQSARGRSMFKRK 106
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BLAST of mRNA_L-elsbetiae_contig10017.65.1 vs. uniprot
Match: A0A7S3Y243_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y243_HETAK)

HSP 1 Score: 75.1 bits (183), Expect = 1.580e-12
Identity = 38/64 (59.38%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:  313 EYVDPDDVGEIVSSELPPMWVPLAVGVVLTLGISLLQGSLGDVMNDEAKLGALSGARAAKQSAR 504
            + VD    GE+   ELPPMWVPLA G VL +GI +LQ SLGDVM  EA LG+ SGARA K++ R
Sbjct:  449 DTVDDPTSGEVAKEELPPMWVPLATGAVLFVGIGVLQASLGDVMEAEAGLGSASGARARKENTR 512
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BLAST of mRNA_L-elsbetiae_contig10017.65.1 vs. uniprot
Match: A0A7S3PV07_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PV07_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 4.220e-10
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:  352 SELPPMWVPLAVGVVLTLGISLLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMFKKK 528
            +ELPP+WVP+   +V+  G+ LL  SLGDVMN+EA LG +SGA+A K+  R R  + KK
Sbjct:   78 AELPPVWVPILFAIVIIGGVGLLTFSLGDVMNEEASLGLMSGAKAKKEKERSRSSYFKK 136
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BLAST of mRNA_L-elsbetiae_contig10017.65.1 vs. uniprot
Match: A0A7R9ZRN9_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZRN9_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 6.520e-9
Identity = 30/59 (50.85%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:  352 SELPPMWVPLAVGVVLTLGISLLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMFKKK 528
            +ELPP+WVP    +VL +G+ LL GSLG+V+++E+ LG  SGARA K+  R R  + KK
Sbjct:   65 AELPPVWVPAVFALVLLVGVGLLTGSLGNVIDEESMLGLQSGARAKKEIERSRSSYFKK 123
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BLAST of mRNA_L-elsbetiae_contig10017.65.1 vs. uniprot
Match: A0A7S2V989_9STRA (Hypothetical protein n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2V989_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.150e-8
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:  340 EIVSSELPPMWVPLAVGVVLTLGISLLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMFKKK 528
            ++  +ELPP +VP   GV L +G+ LL GSLG+VM++EA LG  SGARA K+  R R  + KK
Sbjct:   86 DVQFAELPPPYVPALFGVGLLVGVGLLTGSLGNVMDEEASLGMQSGARAKKEIERSRSSYFKK 148
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BLAST of mRNA_L-elsbetiae_contig10017.65.1 vs. uniprot
Match: A0A6U1Q394_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1Q394_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 5.290e-8
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:  358 LPPMWVPLAVGVVLTLGISLLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMF 519
            LPP WVP+ V + L  G+ LLQ SLG+V +DEA LG+ SGARA K+S R++   
Sbjct:   89 LPPFWVPVGVAIALLGGVGLLQLSLGNVADDEAMLGSASGARARKESTRNKKFL 142
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10017.65.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G8H6_ECTSI1.150e-5563.28Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CD09_9STRA1.170e-2060.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3Y243_HETAK1.580e-1259.38Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3PV07_9STRA4.220e-1052.54Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7R9ZRN9_9STRA6.520e-950.85Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2V989_9STRA2.150e-850.79Hypothetical protein n=2 Tax=Amphiprora paludosa T... [more]
A0A6U1Q394_9STRA5.290e-853.70Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10017contigL-elsbetiae_contig10017:4646..6349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_003060.1
Exons3
Model size546
Cds size546
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10017.65.1prot_L-elsbetiae_contig10017.65.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10017 4646..6349 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815235.739593-CDS-L-elsbetiae_contig10017:4645..48581622815235.739593-CDS-L-elsbetiae_contig10017:4645..4858Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10017 4646..4858 -
1691682786.8026826-CDS-L-elsbetiae_contig10017:4645..48581691682786.8026826-CDS-L-elsbetiae_contig10017:4645..4858Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10017 4646..4858 -
1622815235.7498572-CDS-L-elsbetiae_contig10017:5546..57051622815235.7498572-CDS-L-elsbetiae_contig10017:5546..5705Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10017 5547..5705 -
1691682786.8181117-CDS-L-elsbetiae_contig10017:5546..57051691682786.8181117-CDS-L-elsbetiae_contig10017:5546..5705Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10017 5547..5705 -
1622815235.759157-CDS-L-elsbetiae_contig10017:6175..63491622815235.759157-CDS-L-elsbetiae_contig10017:6175..6349Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10017 6176..6349 -
1691682786.837972-CDS-L-elsbetiae_contig10017:6175..63491691682786.837972-CDS-L-elsbetiae_contig10017:6175..6349Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10017 6176..6349 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10017.65.1

>prot_L-elsbetiae_contig10017.65.1 ID=prot_L-elsbetiae_contig10017.65.1|Name=mRNA_L-elsbetiae_contig10017.65.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=182bp
MKFCTSKPTLMLVAAFLWPSALAFTAPSIIAAGTTSRSRHGAMRAHVDHQ
PVPSAPEQVVATPDVIRAASRPQGARQAGSLERALQGAAMGAAAGFAGAS
GALAEYVDPDDVGEIVSSELPPMWVPLAVGVVLTLGISLLQGSLGDVMND
EAKLGALSGARAAKQSARDRDMFKKKDPESQ*
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mRNA from alignment at L-elsbetiae_contig10017:4646..6349-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10017.65.1 ID=mRNA_L-elsbetiae_contig10017.65.1|Name=mRNA_L-elsbetiae_contig10017.65.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1704bp|location=Sequence derived from alignment at L-elsbetiae_contig10017:4646..6349- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAATTCTGCACCAGTAAGCCCACTCTGATGTTGGTGGCGGCTTTCTT
GTGGCCGTCAGCGCTGGCTTTTACCGCGCCAAGCATCATCGCTGCGGGAA
CGACCTCTCGGTCGCGGCATGGAGCTATGAGAGCCCACGTGGATCATCAG
CCCGTACCATCCGCTCCTGAGCAGGTACTTTGCTTCAGATGGTTGGGCAT
TTGCCGGTATTTATGTGTGTGGAGTGTTAATGGTGTTCGTATTCGTATTT
TCGAGGTGAAAAACACACGTTGAAATGTAAACAAAAAGGTGAATCATGTT
GAACATGAGACGATTACACCCTGTCTCGCTCGAGGCACCTGCTCACCTGC
TATATTGTAGCTGTCTTTGTTTGCCCCGGCAAGGAAAATTCAACGCTGCT
CATCCCTGATGCATCCGGCTTTGTTTGCGAACGTTTTGTCATCTCTGAAA
ATAAAGAGGTACATAGACTAGACGCTGCTGCTTCTGCACACATGATACAC
TCTCTACTTCTAGATACACTTCACGTTTGCAACCGTTGCATGTAGGATGC
CATGTCGGATCCGAGGTCGCACATCGTTCACGTCCCCCCTGTCACATCTG
CACATTGGTGTGGCGCCCCTCATTTTTCGTGCTGGTGTGTGCAGGTTGTT
GCTACCCCGGACGTTATTCGTGCCGCCAGCAGACCGCAGGGGGCGCGACA
AGCGGGGTCTCTCGAAAGAGCGCTGCAGGGGGCGGCGATGGGGGCCGCAG
CCGGCTTTGCTGGCGCGTCGGGAGCACTGGCGGAGTACGTTGACCCTGAT
GATGTGAGCGACTGTTGATACTTACCATTATTTCTTCGAATAGCAGTGGG
CCATCGATTGGCGTCTCTCTTGTAGGATATGGCGGATATGCATGCACTTC
CATATCTTCCAAGATCGTAGATATGTAGTTGATCCGTGTGGGCGGCAGGA
ACGCCAGTGCTGCTACAGATCGTGCTTACCTGGTTTAGTAGTTGTATCTG
GTATCATGTGTGTTCATGGATTGCCGAGTACACCCAGAGAAGCGTGAGCT
TTTCCGCGTTTTGAACCAAGCCAGCTTCTTCGTTCAGGGCAGGCAGACCC
CGATTCGATCTTGCGGCGGAGCGTTCGACTAGGTTATCAAGTCACAGCAG
TGCGGGAGGGTTACCGTGCCCATTTACATGCGTCCGTGTGCCCCTCGCGA
CCCGAGGGGCACACGCACACTGCCTTCTCGTGGGAGGTGCTGAGAATCCC
CGACGATTGAAATTGCGCATGGTGGGCAGCCATCCACGCCGCATGACCGT
GCACCGAGATCGCGTCTTCATCCTCTGTTGGACCACTGCGCGCAGAAGAT
ACATATACTACGATACCTGTGTACGTTGCATATGCAAATCGCCAACAATG
AAACCACATCCACGTGTGGTATGTTTGAAGTATGTACGCGTGTTGATGCC
AGTGACTGACATATCGGCGAACACAATCCGAACGATGGCAGGTCGGCGAA
ATCGTCAGTAGCGAGTTGCCGCCGATGTGGGTGCCACTAGCGGTCGGGGT
TGTGCTCACGTTGGGCATCAGCCTGCTGCAGGGGAGTTTGGGCGACGTCA
TGAACGACGAGGCCAAGCTGGGAGCACTGTCGGGCGCGAGGGCTGCCAAG
CAGAGTGCCCGTGACCGAGACATGTTCAAGAAGAAGGACCCAGAATCGCA
GTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10017:4646..6349-

>mRNA_L-elsbetiae_contig10017.65.1 ID=mRNA_L-elsbetiae_contig10017.65.1|Name=mRNA_L-elsbetiae_contig10017.65.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1092bp|location=Sequence derived from alignment at L-elsbetiae_contig10017:4646..6349- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAATTCTGCACCAGTAAGCCCACTCTGATGTTGGTGGCGGCTTTCTT
GTGGCCGTCAGCGCTGGCTTTTACCGCGCCAAGCATCATCGCTGCGGGAA
CGACCTCTCGGTCGCGGCATGGAGCTATGAGAGCCCACGTGGATCATCAG
CCCGTACCATCCGCTCCTGAGCAGATGAAATTCTGCACCAGTAAGCCCAC
TCTGATGTTGGTGGCGGCTTTCTTGTGGCCGTCAGCGCTGGCTTTTACCG
CGCCAAGCATCATCGCTGCGGGAACGACCTCTCGGTCGCGGCATGGAGCT
ATGAGAGCCCACGTGGATCATCAGCCCGTACCATCCGCTCCTGAGCAGGT
TGTTGCTACCCCGGACGTTATTCGTGCCGCCAGCAGACCGCAGGGGGCGC
GACAAGCGGGGTCTCTCGAAAGAGCGCTGCAGGGGGCGGCGATGGGGGCC
GCAGCCGGCTTTGCTGGCGCGTCGGGAGCACTGGCGGAGTACGTTGACCC
TGATGATGTTGTTGCTACCCCGGACGTTATTCGTGCCGCCAGCAGACCGC
AGGGGGCGCGACAAGCGGGGTCTCTCGAAAGAGCGCTGCAGGGGGCGGCG
ATGGGGGCCGCAGCCGGCTTTGCTGGCGCGTCGGGAGCACTGGCGGAGTA
CGTTGACCCTGATGATGTCGGCGAAATCGTCAGTAGCGAGTTGCCGCCGA
TGTGGGTGCCACTAGCGGTCGGGGTTGTGCTCACGTTGGGCATCAGCCTG
CTGCAGGGGAGTTTGGGCGACGTCATGAACGACGAGGCCAAGCTGGGAGC
ACTGTCGGGCGCGAGGGCTGCCAAGCAGAGTGCCCGTGACCGAGACATGT
TCAAGAAGAAGGACCCAGAATCGCAGTAGGTCGGCGAAATCGTCAGTAGC
GAGTTGCCGCCGATGTGGGTGCCACTAGCGGTCGGGGTTGTGCTCACGTT
GGGCATCAGCCTGCTGCAGGGGAGTTTGGGCGACGTCATGAACGACGAGG
CCAAGCTGGGAGCACTGTCGGGCGCGAGGGCTGCCAAGCAGAGTGCCCGT
GACCGAGACATGTTCAAGAAGAAGGACCCAGAATCGCAGTAG
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