mRNA_L-elsbetiae_contig10017.64.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10017.64.1
Unique NamemRNA_L-elsbetiae_contig10017.64.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10017.64.1 vs. uniprot
Match: D7G8H7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8H7_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 1.380e-54
Identity = 102/143 (71.33%), Postives = 117/143 (81.82%), Query Frame = 1 
Query:    4 QAMGTLLGTMFGFVSAALLTPIHGGEREDGMPAASGVVVGSSLGVLAAHSAGEGNQPLQQLASLLVLSVAAATATTAACCWLVGDILQNGGSAGIMVLATLASLGSTATFTLLKHIVLLRRAAALGSLDDRDDADILPRIHAD 432
            QAMGTLLGTMFGFVSAALLTPI GGERE G+PAA GV++GSSLGVLAA+SAGEG QPL+QL  LL+LSV AA  TTAAC WL GD+LQNGGS GIMVLAT+ASLGSTA FT+ KH +LL RAA   + DDR+  + LP +  +
Sbjct:   14 QAMGTLLGTMFGFVSAALLTPIDGGEREHGLPAAPGVIMGSSLGVLAAYSAGEGTQPLRQLLYLLLLSVGAAAVTTAACSWLTGDVLQNGGSVGIMVLATVASLGSTAVFTIDKHNMLLTRAATAAAFDDRERHEGLPHLQEE 156
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10017.64.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8H7_ECTSI1.380e-5471.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10017contigL-elsbetiae_contig10017:1512..3612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_003080.1
Exons3
Model size1583
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10017.64.1prot_L-elsbetiae_contig10017.64.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10017 1521..2494 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815235.6407733-UTR-L-elsbetiae_contig10017:1511..15201622815235.6407733-UTR-L-elsbetiae_contig10017:1511..1520Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10017 1512..1520 +
1691682786.7252698-UTR-L-elsbetiae_contig10017:1511..15201691682786.7252698-UTR-L-elsbetiae_contig10017:1511..1520Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10017 1512..1520 +
1622815235.7050319-UTR-L-elsbetiae_contig10017:2494..36121622815235.7050319-UTR-L-elsbetiae_contig10017:2494..3612Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10017 2495..3612 +
1691682786.7918077-UTR-L-elsbetiae_contig10017:2494..36121691682786.7918077-UTR-L-elsbetiae_contig10017:2494..3612Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10017 2495..3612 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815235.6543398-CDS-L-elsbetiae_contig10017:1520..16251622815235.6543398-CDS-L-elsbetiae_contig10017:1520..1625Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10017 1521..1625 +
1691682786.735242-CDS-L-elsbetiae_contig10017:1520..16251691682786.735242-CDS-L-elsbetiae_contig10017:1520..1625Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10017 1521..1625 +
1622815235.6721764-CDS-L-elsbetiae_contig10017:1926..20821622815235.6721764-CDS-L-elsbetiae_contig10017:1926..2082Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10017 1927..2082 +
1691682786.7503376-CDS-L-elsbetiae_contig10017:1926..20821691682786.7503376-CDS-L-elsbetiae_contig10017:1926..2082Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10017 1927..2082 +
1622815235.6871145-CDS-L-elsbetiae_contig10017:2299..24941622815235.6871145-CDS-L-elsbetiae_contig10017:2299..2494Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10017 2300..2494 +
1691682786.780495-CDS-L-elsbetiae_contig10017:2299..24941691682786.780495-CDS-L-elsbetiae_contig10017:2299..2494Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10017 2300..2494 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10017.64.1

>prot_L-elsbetiae_contig10017.64.1 ID=prot_L-elsbetiae_contig10017.64.1|Name=mRNA_L-elsbetiae_contig10017.64.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=152bp
MGTLLGTMFGFVSAALLTPIHGGEREDGMPAASGVVVGSSLGVLAAHSAG
EGNQPLQQLASLLVLSVAAATATTAACCWLVGDILQNGGSAGIMVLATLA
SLGSTATFTLLKHIVLLRRAAALGSLDDRDDADILPRIHADRAPLMGPKE
T*
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mRNA from alignment at L-elsbetiae_contig10017:1512..3612+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10017.64.1 ID=mRNA_L-elsbetiae_contig10017.64.1|Name=mRNA_L-elsbetiae_contig10017.64.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2101bp|location=Sequence derived from alignment at L-elsbetiae_contig10017:1512..3612+ (Laminarionema elsbetiae ELsaHSoW15)
ATACAGGCGATGGGTACCTTGCTGGGGACAATGTTCGGCTTTGTATCTGC
TGCCCTTCTGACTCCCATCCACGGCGGGGAGCGAGAAGACGGCATGCCAG
CAGCGTCTGGTGTGGTGAGTTACTTTCTCTCTTATCGCCCTTGCACACAT
GTGTGGTTGAAACGTTTGACCCAAACTTCCATGGGGGGTGGGTGTTCCCG
CAGCTTTTTGGTGGGTTCCTGAATCCTAGCCATATCAAGGTCAGACTCTC
GTTTTCGGCAAGAGCGACCAGGCCGTCTGGGTCCCAAATGACTGGTGTGT
CGGCGCCGCACACCTCACCAGCGAATAAAGCTCCAAACCGCTGTCTGGCC
ATGATTACAAATCTCGGGGAGCACGGCTGTTGTTCATGCCTGCCGCGGTA
CTTGTATCTGTCTAGGTCGTCGGATCTTCCCTCGGTGTGCTCGCGGCCCA
TTCGGCAGGCGAAGGAAACCAGCCCCTCCAACAGCTGGCTTCCCTCCTAG
TTCTCAGTGTAGCGGCGGCGACTGCAACAACAGCAGCATGTTGCTGGCTG
GTGGGCGACATTCTGCAGAACGTGAGAGCCTGTTTTGCGTTGCTGCACTG
CTGTATATAGTCTACATAGATACTTCGTTTGGGGGTGTGATTTTCCCCGT
TTAAATACCAACACTAACATTTCTCAAGCATCCAGGAGGAAGCGCTGCTG
TTTGCGCGGACACGCGCATATCACCGCCTCCTTGGTACTAGGCGTCCCCT
CCACCCTTCTTTCCCTTGTTGCCTGCTTGGCTGCCCAGGGTGGAAGCGCC
GGCATAATGGTATTGGCGACCCTGGCCAGCTTGGGCTCGACGGCGACATT
CACGTTGCTCAAGCACATTGTGCTGCTCAGAAGAGCTGCGGCGCTAGGAT
CACTCGACGATCGCGATGATGCCGACATTTTACCACGAATCCACGCCGAC
CGCGCCCCTTTGATGGGCCCTAAGGAGACGTGAGGTGGTGCGCCATCTGT
CGCGGTTTTAAAGAAGCAAGGCCGCTATGGTGACGTCACTGAGCGAGCGG
CACGGAAATTCGGCGTTGGTATCCTATGTAGCGTCCCACAATGGGACGAC
CACGAGATGGTGTGCCGGCAGTCCAAGTCAGACTTGGTGTTGGCGCCTTG
CCAGTATCCGTGACCATCGCAGCAAAGAAATGTGGTGGTTACCTGCGCAA
CACCTCCCAAAATGTGCGAGAACTGGGAGGTTCCAGGGTGCGCCTTGTTC
GTGCGGCAGGGTGTCTGGATGTGCACTTAAGGTAGGCCACGATCAGTGGC
CCGGTAGCGTCCCCTGCTTTACTGTACAATCTGGATCAATTTTTTTCTCT
TGATTCAAAGCACAGTAAATTGTCGAAATGCCCGACGATTTAAAAAAAAT
GGGGCACCATCTCCTTGGCCAGTAGGCGAGGAGATATGTCGCACGGTATC
CCAAAAGAGTAACATAGCCCGGGGGCAGGCTTCAAACAGATCCTTGTGCT
TCGAGTGGCGGCGTGACAAAAGAGCATTTTTCGCCCTCTTGGAACGGCTG
TAAATATGCGGCCTACAGTAGCCCCGACCTCAGCCTATGGCGGCGGACGC
CATGACAGGTACGCCCAACCAGAGGCTACGACGAGACACAGGTGTACTCG
AATAGTACCTTAGAGCAATCTCTGGCGTCCTCAGCCACGGTGGCAGCCCC
GTTTTAAAATGGCAGTGACGTTTGCCATGTCGAGAGGTTTTCAGCGGTCG
ATTAAGGTTTGATACGAAGAACGGAGGGCAGCAAAGGCTCTACAAAAACG
CTAAAGAAACGAAGGCCACGCGATGGTAGCTGTTGTCCTTAGTTTTCGAT
AGATATGTTAACCTAGTGGCCAAGGAGAATGTGCTTCATTTTAAATTGCG
ATGGCGCTTAGGGTAAAAGCGAAAAGAGGCCAAAAAAACAGTTGCGCCGT
AAAAAAAACGTCGGGTTTTTGGGGTTTTGCCGACAAGCTGCTGACTAGGT
CAGCTTTTGCCCGGTGCGGACCACTAAACACAACATGCGTCTCCGCCTTT
TCTGGGGTTTGACCCTTTCCGCTTAAGCCACGTGATCGTGGCCTACCTTA
A
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10017:1512..3612+

>mRNA_L-elsbetiae_contig10017.64.1 ID=mRNA_L-elsbetiae_contig10017.64.1|Name=mRNA_L-elsbetiae_contig10017.64.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=912bp|location=Sequence derived from alignment at L-elsbetiae_contig10017:1512..3612+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTACCTTGCTGGGGACAATGTTCGGCTTTGTATCTGCTGCCCTTCT
GACTCCCATCCACGGCGGGGAGCGAGAAGACGGCATGCCAGCAGCGTCTG
GTGTGATGGGTACCTTGCTGGGGACAATGTTCGGCTTTGTATCTGCTGCC
CTTCTGACTCCCATCCACGGCGGGGAGCGAGAAGACGGCATGCCAGCAGC
GTCTGGTGTGGTCGTCGGATCTTCCCTCGGTGTGCTCGCGGCCCATTCGG
CAGGCGAAGGAAACCAGCCCCTCCAACAGCTGGCTTCCCTCCTAGTTCTC
AGTGTAGCGGCGGCGACTGCAACAACAGCAGCATGTTGCTGGCTGGTGGG
CGACATTCTGCAGAACGTCGTCGGATCTTCCCTCGGTGTGCTCGCGGCCC
ATTCGGCAGGCGAAGGAAACCAGCCCCTCCAACAGCTGGCTTCCCTCCTA
GTTCTCAGTGTAGCGGCGGCGACTGCAACAACAGCAGCATGTTGCTGGCT
GGTGGGCGACATTCTGCAGAACGGTGGAAGCGCCGGCATAATGGTATTGG
CGACCCTGGCCAGCTTGGGCTCGACGGCGACATTCACGTTGCTCAAGCAC
ATTGTGCTGCTCAGAAGAGCTGCGGCGCTAGGATCACTCGACGATCGCGA
TGATGCCGACATTTTACCACGAATCCACGCCGACCGCGCCCCTTTGATGG
GCCCTAAGGAGACGTGAGGTGGAAGCGCCGGCATAATGGTATTGGCGACC
CTGGCCAGCTTGGGCTCGACGGCGACATTCACGTTGCTCAAGCACATTGT
GCTGCTCAGAAGAGCTGCGGCGCTAGGATCACTCGACGATCGCGATGATG
CCGACATTTTACCACGAATCCACGCCGACCGCGCCCCTTTGATGGGCCCT
AAGGAGACGTGA
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