mRNA_L-elsbetiae_contig10006.55.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig10006.55.1 vs. uniprot
Match: A0A6H5JTH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTH2_9PHAE) HSP 1 Score: 251 bits (642), Expect = 3.570e-75 Identity = 171/380 (45.00%), Postives = 221/380 (58.16%), Query Frame = 1 Query: 4 VLGKGGRTEQVDAGDGLGRGILMHAARSNHVETFREVLRMCREDS-----------GGRNEEEHSEPTLSVPAATDARLVLEA----DILGMNCLHHAAEAGCFEVLKEVFDIFQEAGKETYKADNARRTPLMLVLRNESRCDQDE-----------LKLKFDILYKGWEDSPHDSGANTRKKGWMTPSSVPPQCPPVSGKTKAIETQAVTELMHAARGGLASLELALSYHPLNIKRDG-GDFTVDLDEALAVEVELENGVWGKSTSTDNAVWGRALLLAAAAKLGDVDVISQILNAIEKGKFSL-KRGEDAKIVSLPEVASLANDEPMALPINEEVKNTIEAISDRYLSVFSYAIMSGRTDAVKLINDLVLRTFRGDTE 1059 VLGKG +Q + DGLGRGILMHAARSNHVE F+EVL CRE + GG+ E + + A+ DA L+L+ D +G NCLHHAAEAG + VL EV ++ +E AD RTP+M VLRN+S Q + L+ K LY+ D+ G R GWM PS VP P V K + ++T+AVTEL+HAARGGL SLELAL+ PL + FTV LD+ALAV + ++ + T WG ALLLAAAAKLG +DV+ +L AI+KGKF+L KR E+ + L +V A+ + LP + V+ + AI R SVFSYAI+SGRTDA++L+ DLV F TE Sbjct: 127 VLGKGELVQQFELVDGLGRGILMHAARSNHVENFKEVLNGCREVADCMLPHDKPTVGGQTESLDPQLPATDTASADAGLLLQVLGKVDRMGKNCLHHAAEAGSYAVLDEVVELCGSLYEEMNTADIMGRTPIMYVLRNDSCRGQAQQGPTLTLREQSLRKKLYELYEALPDATCTRGTPVRT-GWMKPSRVPAPIPTVPKKNR-VDTRAVTELIHAARGGLVSLELALNELPLASRNSTESGFTVALDDALAVNITIDKAQEEQFHRTK--AWGWALLLAAAAKLGGIDVLYHVLLAIKKGKFNLVKRSENDRDFRLAKVERPADGGRVELPRGDRVQAAVRAIKTRAKSVFSYAILSGRTDAMELVYDLVRGLFGNYTE 502
BLAST of mRNA_L-elsbetiae_contig10006.55.1 vs. uniprot
Match: D8LH99_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH99_ECTSI) HSP 1 Score: 256 bits (653), Expect = 9.570e-73 Identity = 174/383 (45.43%), Postives = 223/383 (58.22%), Query Frame = 1 Query: 4 VLGKGGRTEQVDAGDGLGRGILMHAARSNHVETFREVLRMCREDS-----------GGRNEEEHSEPTLSVPAATDARLVLE----ADILGMNCLHHAAEAGCFEVLKEVFDIFQEAGKETYKADNARRTPLMLVLRNESRCDQDE-----------LKLKFDILYKGWEDS--PHDSGANTRKKGWMTPSSVPPQCPPVSGKTKAIETQAVTELMHAARGGLASLELALSYHPLNIKRDG-GDFTVDLDEALAVEVELENGVWGKSTSTDNAVWGRALLLAAAAKLGDVDVISQILNAIEKGKFSL-KRGEDAKIVSLPEVASLANDEPMALPINEEVKNTIEAISDRYLSVFSYAIMSGRTDAVKLINDLVLRTFRGDTEE 1062 VLGKG +Q + DGLGRGILMHAARSNHV+ F+EV CRE + GG+ E + + A+ D L+ E AD +G NCLHHAAEAG + VL EV + +E AD RTP+M VLRN+S Q++ L+ KF LY+ +D+ P D+ T GWM PS VPP V T+ ++T+AVTELMHAARGGL SLELAL+ PL + G FTV LD ALAV + + N + S WG ALLLAAAAKLGD+DV+ +L AI+KGKF+L K GE+ L +V A + LP + V+ + AI+ R SVFSYAI+SGRTDA++L+ DLV F T + Sbjct: 116 VLGKGELVQQFELVDGLGRGILMHAARSNHVDNFKEVFNRCREVADRMRPHDEPTVGGQTESLDPQLPATDTASADIGLLREVLGKADRIGKNCLHHAAEAGSYAVLHEVVKLCCSVYEEMNTADIMGRTPIMYVLRNDSCRGQEQQGSTLALKEESLRKKFHELYEALQDATCPQDTPVKT---GWMEPSRVPPPSLAVPKGTR-VDTRAVTELMHAARGGLVSLELALNKLPLASRNIAEGGFTVALDNALAVNMTIGNT---QEQSHRTKAWGWALLLAAAAKLGDIDVLYHVLLAIKKGKFTLVKHGENDHDFRLAKVERPAGGGWVELPRGDRVQEAVRAINTRGKSVFSYAILSGRTDAMELVYDLVRGLFGDKTSQ 491
BLAST of mRNA_L-elsbetiae_contig10006.55.1 vs. uniprot
Match: D8LHA0_ECTSI (Transient Receptor Potential Channel. Partial sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA0_ECTSI) HSP 1 Score: 248 bits (632), Expect = 6.280e-70 Identity = 172/390 (44.10%), Postives = 223/390 (57.18%), Query Frame = 1 Query: 4 VLGKGGRTEQVDAGDGLGRGILMHAARSNHVETFREVLRMCREDS--------------GGRNE-----------EEHSEPTLSVPAATDARLVLE-----ADILGMNCLHHAAEAGCFEVLKEVFDIFQEAGKETYKADNARRTPLMLVLRN-------ESRCDQDELKLKFDILYKGWEDSPHDSGANTRKKGWMTPSSVPPQCPPVSGKTKAIETQAVTELMHAARGGLASLELALSYHPLNIKRDGGD-FTVDLDEALAVEVELENGVWGKSTSTDN--AVWGRALLLAAAAKLGDVDVISQILNAIEKGKFSLKRGEDAKIVSLPEVASLANDEPMALPINEEVKNTIEAISDRYLSVFSYAIMSGRTDAVKLINDLVLRTFRGD 1053 VLGKGG EQ +A DGLGRGILMHAARSNHV+TF++V CR+ + GR E E S+ T P + L+L D GM CLHHAAEAG EVL EV + +D + RTP+MLVLRN E C Q +L+ KF IL+ P + R GWM PS + PQ P +T +ET+AVTEL+HAARGG+ SLELAL+ N K D D F V LD ALAVEV ++ G W +S + +WGRALLLAAAA+LGDVDV+ +L AIE +F L+ +DA LPE ++ P A+P++ +++ + I+ R +S+FS AI+S R +AV+LI DLV+R F D Sbjct: 123 VLGKGGVIEQFEALDGLGRGILMHAARSNHVDTFKDVFDKCRKAAESVRLHDQSNAVANDGRIEIPEVPLYGFRGERPSDSTTQTPEKSSNSLLLREVLGTVDRKGMTCLHHAAEAGSSEVLCEVVKECGSHWADLGASDRSGRTPIMLVLRNAFCCEGEEHTCRQTDLEDKFGILFDEIPLEPIRATGGHRYIGWMQPSRIQPQRLPAPKQTP-VETRAVTELIHAARGGVVSLELALNKALPNSKTDSEDGFKVHLDSALAVEVCID-GSWRQSQDDHHRTVIWGRALLLAAAARLGDVDVLYHVLVAIEDDEFFLE-ADDAGKFRLPERPIPVDETPTAIPVSNKLREVLGMINSRNVSLFSLAILSRRHEAVELIFDLVVRLFGED 509
BLAST of mRNA_L-elsbetiae_contig10006.55.1 vs. uniprot
Match: D8LH97_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH97_ECTSI) HSP 1 Score: 183 bits (464), Expect = 1.350e-47 Identity = 143/367 (38.96%), Postives = 198/367 (53.95%), Query Frame = 1 Query: 4 VLGKGGRTEQVDAGDGLGRGILMHAARSNHVETFREVL----RMCREDSGGRNEEEHSEPTLSVPAATDARLVLEADILGMNCLHHAAEAGCFEVLKEVFDIFQEAGKETY-KADNARRTPLMLVLRNESRCDQ--DELKLKFDILYK------GWEDSP---HDSGANTRKKGWMTPSSVPPQCPPVSGKTKAIETQAVTELMHAARGGLASLELALSYHPLNIKR--DGGDFTVDLDEALAVEVELENGVWGKSTSTDNAVWGRALLLAAAAKLGDVDVISQILNAIEKGKFSLKRGEDAKIVSLPEVASLANDEPMALPIN--EEVKNTIEAISDRYLSVFSYAIMSGRTDAVKLINDLVLRTF 1044 LGKGG EQ+ A DG GR +LMHAARSN+ + + E++ ++ S G E++H GMNCLHHAAEAGC EVL +V + +AG +Y + DN RTP+M VL + SR ++ D L+ KF +LY G +D HD G K+GWM + VP Q +S + + + VTELMHAARGGL SLELAL+ PL R DG ++ LD AL VE + + WG+ LLLAAAA+ GD+DV+ +L AI+ KF+ + D + E + LA LP E+V+ + +S S+FS AI+SG+T AVK + L+++ F Sbjct: 132 ALGKGGLLEQLGAVDGEGRTMLMHAARSNNSDAYDEIVGIYFKVVPLTSSGYTEKDHK---------------------GMNCLHHAAEAGCSEVLGKVIKKYSDAGGSSYAERDNNNRTPVMCVLSDASREERADDSLRDKFTLLYSNMSTTCGEQDEKVCTHDGGH--AKQGWMEMTDVPTQ--QISRSEEISKARGVTELMHAARGGLVSLELALN-EPLPSSRLEDG---SISLDGALNVEA-CDEPASDEPRWEPQPAWGKGLLLAAAAERGDIDVLHVVLTAIKDNKFTKEPNTDRFTLRKQE-SRLAE-----LPYGDGEKVRTVVREMSKGGKSLFSEAILSGQTVAVKHVYRLIVKLF 462
BLAST of mRNA_L-elsbetiae_contig10006.55.1 vs. uniprot
Match: A0A6H5JNN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN7_9PHAE) HSP 1 Score: 179 bits (453), Expect = 3.320e-47 Identity = 143/365 (39.18%), Postives = 192/365 (52.60%), Query Frame = 1 Query: 4 VLGKGGRTEQVDAGDGLGRGILMHAARSNHVETFREVLRMCREDSGGRNEEEHSEPTLSVPAATDARLVLEADILGMNCLHHAAEAGCFEVLKEVFDIFQEAGKETY-KADNARRTPLMLVLRNESRCDQ--DELKLKFDILYKGW--------EDSPHDSGANTRKKGWMTPSSVPPQCPPVSGKTKAIETQA--VTELMHAARGGLASLELALSYHPLNIKRDGGDFTVDLDEALAVEVELENGVWGKSTSTDNAVWGRALLLAAAAKLGDVDVISQILNAIEKGKFSLKRGEDAKIVSLPEVASLANDEPMALPINEEVKNTIEAISDRYLSVFSYAIMSGRTDAVKLINDLVLRTFRGDTE 1059 LGKGG EQ++A DG GR +LMHAARSN F E++ + + +VP + D GMNCLHHAAEAGC EVL +V + +AG +Y + DN RTP+M VL + +R + D L KF +LY E D G + K+GWM + V Q +S K+ I +A VTELMHAARGGL SLELAL+ PL R D ++ LD AL V+ + K WG+ LLLAAAA+ GD+DV+ +L AI+ G F+ K D + E LP E VK + +S S+FS AI+SGRT AV+ + L+++ F G+T+ Sbjct: 140 ALGKGGLIEQLEAVDGEGRTMLMHAARSNDGNAFDEIVGIY---------------SKAVPLTSSDYTA--KDRKGMNCLHHAAEAGCSEVLGKVIKKYSDAGGSSYAERDNNNRTPVMYVLSDATRDVRAGDSLLKKFTLLYSNMPTTCGKQDEKVSVDPGEHA-KEGWMEMTDVLTQRIQIS-KSHEITRKARGVTELMHAARGGLGSLELALN-EPLPSSRLA-DGSISLDIALNVKA-CDEAASDKPRWEPQPAWGKGLLLAAAAERGDIDVLHIVLTAIQDGVFTKKPNADRFTLRRHE------GRRAGLPFGENVKTVVREMSKGGKSLFSQAILSGRTVAVEHVYLLIVKLF-GETD 475
BLAST of mRNA_L-elsbetiae_contig10006.55.1 vs. uniprot
Match: D7FNX3_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX3_ECTSI) HSP 1 Score: 144 bits (364), Expect = 1.150e-34 Identity = 121/350 (34.57%), Postives = 172/350 (49.14%), Query Frame = 1 Query: 4 VLGKGGRTEQVDAGDGLGRGILMHAARSNHVETFREVLRMCREDSGGRNEEEHSEPTLSVPA----ATDARLVLEADILGMNCLHHAAEAGCFEVLKEVFDIFQEAG---KETYKADNARRTPLMLVLRNE--SRCDQDELKLKFDILYKGWEDSPHDSGANTRKKGWMTPSSVPPQCPPVSGKTKAIETQAVTELMHAARGGLASLELALSYHPLNI--KRDGGDFTVDLDEALAVEVELENGVWGKSTSTDNAVWGRALLLAAAAKLGDVDVISQILNAIEKGKFSLKRGEDAKIVSLPEVASLANDEPMALPINEE---VKNTIEAISDRYLSVFSYAIMSGRTDAV 1011 VLG+GG EQV A DG+GR ++M+AAR N VE F V M H + T S + + + + D N LHHAAEAGC +VL EV + + K +K D TPL VLR + +DE++ KF+ L+ ++ K +M P V P P G+T + AVTEL+HAARGGL SL+L L+ L ++ V ++EAL V V+ + G + WG +LLAAAAK G VDV+ +++AI+ G F + +V+ A D+ A +E V IEAI S+F A++SG+ +AV Sbjct: 140 VLGRGGLVEQVAARDGMGRTVVMYAARGNDVEVFHRVWNMYH----------HHQRTFSAAGEGLGGSPSGALTKVDHTERNVLHHAAEAGCLDVLCEVLLLVRRISGDSKTMHKPDKNGLTPLHHVLRAKYGEPEGRDEIRPKFEKLW-----------LHSNKGSFMVPRRVMPM--PCVGRT-GVAVMAVTELIHAARGGLPSLKLVLAKIRLMKFWRKKPDSAVVTVNEALRVTVDGKKGDEDTPGQGELDAWGWGMLLAAAAKGGHVDVLETVVHAIKTGSF------------VEDVSERAADQGQATNTCQELEPVDRAIEAILSSGSSLFGLAVLSGKVEAV 453
BLAST of mRNA_L-elsbetiae_contig10006.55.1 vs. uniprot
Match: A0A6H5JB40_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB40_9PHAE) HSP 1 Score: 113 bits (283), Expect = 9.720e-24 Identity = 114/388 (29.38%), Postives = 168/388 (43.30%), Query Frame = 1 Query: 4 VLGKGGRTEQVDAGDGLGRGILMHAARSNHVETFREVLRMCR----------EDSGGRNEEEHSEPTLSVPAATDARLVLEADILGMNCLHHAAEAGCFEVLKEVFDIFQEAGKET----YKADNARRTPLMLVLR---NESRCDQD-----ELKLKFDILYKGWEDSPHDSGANTRKKGWMTPSSVPPQCPPVSGKTKAIETQAVTELMHAARGGLASLELALSYHPLNIKRDG--GDFTVDLDEALAVEV-ELENG-------------VWGKSTSTDNAVWGRALLLAAAAKLGDVDVISQILNAIEKGKFSLKRGEDAKIVSLPEVASLANDEPMALPINEE---VKNTIEAISDRYLSVFSYAIMSGRTDAVKLINDLVLRTF 1044 LGKGG EQ+ A D LGR I+M+AAR N V+ F+ +M E GG P++++P + D G N LHHAAEAGC +V+ E+ + + T +K D TPL +LR E D E KF+ L+ K +M V P P G+ A+ A+T+++HAARGGL SL+L L+ L G + V ++EAL V V E G + WG +LL AAAK G VDV+ +++AI+ G F + ++ D+ + NEE V +EAI +F A++SG+ +AV + + + + Sbjct: 124 ALGKGGLVEQIAASDDLGRNIVMYAARGNSVDVFKRAWKMYHYHQRTFASPVEGWGGA-------PSITLP---------KVDYTGRNLLHHAAEAGCLDVIHEILLMVRNLSDSTNVTMHKPDKNGLTPLHHLLRAKYGEPEVPDDIEDPAEFPQKFEKLW-----------FYGSKGSFMARRKVMPL--PRDGRA-AVAVSAITDVIHAARGGLPSLQLILAKICLTKCWQGKPNNTVVTIEEALCVAVHETMEGEDEXXXXXXXXXXXXXXXXXXELDAWGWGMLLTAAAKGGHVDVLEHVVHAIKTGSF------------VEGLSDRNADQRHTVYTNEELQRVDRAVEAIVSSGSYLFGQAVLSGKAEAVLWVYQFLAQRY 469
BLAST of mRNA_L-elsbetiae_contig10006.55.1 vs. uniprot
Match: D7FX79_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX79_ECTSI) HSP 1 Score: 110 bits (274), Expect = 1.360e-22 Identity = 112/378 (29.63%), Postives = 162/378 (42.86%), Query Frame = 1 Query: 4 VLGKGGRTEQVDAGDGLGRGILMHAARSNHVETFREVLRMCREDSGGRNEEEHSEPTLSVPAATDARLVLEADILGMNCLHHAAEAGCFEVLKEVF----DIFQEAGKETYKADNARRTPLMLVLR---NESRCDQD-----ELKLKFDILYKGWEDSPHDSGANTRKKGWMTPSSVPPQCPPVSGKTKAIETQAVTELMHAARGGLASLELALSYHPLNIKRDG--GDFTVDLDEALAVEV-ELENG-------------VWGKSTSTDNAVWGRALLLAAAAKLGDVDVISQILNAIEKGKFSLKRGEDAKIVSLPEVASLANDEPMALPINEE---VKNTIEAISDRYLSVFSYAIMSGRTDAVKLINDLVLRTF 1044 LGKGG EQ+ A D LGR I+M+AAR N V+ F+ +M ++ S P A L + D G N LHHAAEAGC +VL E+ + A +K D TPL +LR E D E KF+ L W S RK + P G+ + A+T+++HAARGGL SL+L L+ L G + V ++EAL V V E G + WG +LLAAAAK G VDV+ +++AI+ G F + ++ D+ + N+E V +EAI +F A++SG+ + V + + + + Sbjct: 115 ALGKGGLVEQIAASDDLGRNIVMYAARGNSVDVFKRAWKMYH-----YHQRTFSSPVEGWGGAPSITLT-KVDYTGRNLLHHAAEAGCLDVLNEILLMVRKLSDSANGTMHKPDKNGLTPLHHLLRAKYGEPEVPGDIEDPAEFPQKFEKL---WLYGSKGSFMARRKVMAL----------PRDGRAD-VAVSAITDVIHAARGGLPSLQLILAKICLTKFWQGKPNNTVVTIEEALCVAVHETMEGEDEXXXXXXXXXXXXXXXXXXELDAWGWGMLLAAAAKGGHVDVLEHVVHAIKTGSF------------VEGLSDRNADQLHTVYTNQELQRVDRAVEAIVSSGSYLFGQAVLSGKVEVVLWVYQFLAQRY 460 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10006.55.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig10006.55.1 >prot_L-elsbetiae_contig10006.55.1 ID=prot_L-elsbetiae_contig10006.55.1|Name=mRNA_L-elsbetiae_contig10006.55.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=360bp MVLGKGGRTEQVDAGDGLGRGILMHAARSNHVETFREVLRMCREDSGGRNback to top mRNA from alignment at L-elsbetiae_contig10006:1298..2681- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig10006.55.1 ID=mRNA_L-elsbetiae_contig10006.55.1|Name=mRNA_L-elsbetiae_contig10006.55.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1384bp|location=Sequence derived from alignment at L-elsbetiae_contig10006:1298..2681- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig10006:1298..2681- >mRNA_L-elsbetiae_contig10006.55.1 ID=mRNA_L-elsbetiae_contig10006.55.1|Name=mRNA_L-elsbetiae_contig10006.55.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2160bp|location=Sequence derived from alignment at L-elsbetiae_contig10006:1298..2681- (Laminarionema elsbetiae ELsaHSoW15)back to top |