mRNA_L-elsbetiae_contig10005.54.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10005.54.1
Unique NamemRNA_L-elsbetiae_contig10005.54.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10005.54.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10005contigL-elsbetiae_contig10005:3920..7098 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size976
Cds size975
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10005.54.1prot_L-elsbetiae_contig10005.54.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10005 3920..7098 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815234.702364-CDS-L-elsbetiae_contig10005:3919..42921622815234.702364-CDS-L-elsbetiae_contig10005:3919..4292Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10005 3920..4292 -
1691682785.9020162-CDS-L-elsbetiae_contig10005:3919..42921691682785.9020162-CDS-L-elsbetiae_contig10005:3919..4292Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10005 3920..4292 -
1622815234.7173264-CDS-L-elsbetiae_contig10005:4781..48861622815234.7173264-CDS-L-elsbetiae_contig10005:4781..4886Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10005 4782..4886 -
1691682785.9126315-CDS-L-elsbetiae_contig10005:4781..48861691682785.9126315-CDS-L-elsbetiae_contig10005:4781..4886Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10005 4782..4886 -
1622815234.72732-CDS-L-elsbetiae_contig10005:5530..56161622815234.72732-CDS-L-elsbetiae_contig10005:5530..5616Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10005 5531..5616 -
1691682785.924306-CDS-L-elsbetiae_contig10005:5530..56161691682785.924306-CDS-L-elsbetiae_contig10005:5530..5616Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10005 5531..5616 -
1622815234.7378035-CDS-L-elsbetiae_contig10005:5945..61551622815234.7378035-CDS-L-elsbetiae_contig10005:5945..6155Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10005 5946..6155 -
1691682785.932401-CDS-L-elsbetiae_contig10005:5945..61551691682785.932401-CDS-L-elsbetiae_contig10005:5945..6155Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10005 5946..6155 -
1622815234.7489147-CDS-L-elsbetiae_contig10005:6521..66531622815234.7489147-CDS-L-elsbetiae_contig10005:6521..6653Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10005 6522..6653 -
1691682785.95043-CDS-L-elsbetiae_contig10005:6521..66531691682785.95043-CDS-L-elsbetiae_contig10005:6521..6653Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10005 6522..6653 -
1622815234.7631965-CDS-L-elsbetiae_contig10005:7029..70981622815234.7631965-CDS-L-elsbetiae_contig10005:7029..7098Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10005 7030..7098 -
1691682785.9745014-CDS-L-elsbetiae_contig10005:7029..70981691682785.9745014-CDS-L-elsbetiae_contig10005:7029..7098Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10005 7030..7098 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10005.54.1

>prot_L-elsbetiae_contig10005.54.1 ID=prot_L-elsbetiae_contig10005.54.1|Name=mRNA_L-elsbetiae_contig10005.54.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=325bp
RRVQEREKWLEGEQQELDQTRDRMSSEASRLAVSIGGVEERVSSEAKLVQ
QERANLEKHKRRLQAGKSELDGRRKALEAEERALDARYKNAAADLDAENK
SARAELAKARKALAREKGELASKARNSAAEAEAAARKNAEAESLMRRARE
RERQGAEQDSQRENERRELERERQTLASQRAALDKEAEALQHQVSALLEQ
RAAAERARGQHGNSSGADGLVQEAENRLRQAELRHERAEQREAAAAELEE
ALRASRADVSRREEALALSAAGAARTGTASHHVDDSQLSSGVAMGGRKTA
ASSSAAVAAAAGVSLGVSGGQGWAS
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mRNA from alignment at L-elsbetiae_contig10005:3920..7098-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10005.54.1 ID=mRNA_L-elsbetiae_contig10005.54.1|Name=mRNA_L-elsbetiae_contig10005.54.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3179bp|location=Sequence derived from alignment at L-elsbetiae_contig10005:3920..7098- (Laminarionema elsbetiae ELsaHSoW15)
CGCCGTGTGCAGGAGCGCGAGAAGTGGCTGGAGGGCGAACAGCAGGAGCT
GGACCAGACACGCGATCGGGTTAGTTTGTTCGTTCAGAGACCGTAGGTTG
CTGGCCTGGTGTAGTGCGCCCGAAGGCACTCTTGAAGGAAGGTGCCCTCG
AGAATGATCTTTCCGAGTCGGCTCTTGTCGGTTTTGTTTGGGGGTACATG
CTCGTGTTGCCGGTGCTGTGAGCAGGCGGACCTGAACAACATGACAAGCC
TTCGCCGGCGTGTACCTCAGGTTCTACGAGCGTAGCATGAATGCCGTTCG
AAAGTCCGGCCGCAAGAACAGTTGGACGTCAGGATATTATTCGATTGTGC
GCTTCACGAGGGAGGCCGTCGATCGACACGTCCTCTGTTTGTTGCCCGCC
CTCGCGACGCAATGCCATTATCTGAACATCTGGACACCCGAACAGATGTC
ATCCGAAGCGTCGCGGCTGGCGGTGAGCATCGGGGGCGTCGAGGAGCGCG
TGTCCTCCGAGGCCAAGCTAGTGCAGCAGGAGAGAGCAAACCTGGAAAAG
CACAAGAGGAGGCTGCAGGCCGGCAAGGTAAAAGGGGTTTCGTTTTTCTT
TCTTTTTGTTGTTGCTGCGCTGACGCGACATTTGTATGTGATGTGATGTG
GCGTCATGTGATATGCTGTGGAGTTGTACGCACGAGTGCCGGGCGTTGCC
GCGGGTACGCGATTTATCGCTTGCCGACAACCATCGCTGGGCAGGCTCGT
CGTCGCCCCGTTTTTATTTTCTTATCGTGTTTGTATGTACGCGAAGTGCG
GTGGGAAGACATTCCAAGGCGGCCCTTCCGTGTTGGGCTGATTTTTCCTC
TTGTGGGTGGGTTGAACGCGCAATCGTTTTATTTCGTCGCAACATCGTGT
GGCGTATCTCACTGCGCTGTCTCGCCCCCGCCTTGTCCCCCAGAGCGAGC
TGGACGGGCGGCGCAAAGCCTTGGAGGCGGAGGAGAGGGCGTTAGACGCC
CGGTACAAAAACGCCGCCGCAGACCTCGATGCCGAGAACAAGTCGGCGAG
AGCGGAGTTAGCCAAGGCGAGGAAGGCGTTGGCGAGGGAAAAGGGGGAGC
TGGCCTCCAAGGCCAGAAACTCGGCGGCTGAAGCTGAGGCGGCCGCAAGG
AAGGTGCGCGTGCGTTTGTATGTATATATATGCTAGCCCTGGCACGGTCA
CGGGGCTTCTCCTTTTTGTTTGTTTTTGGGCGGCGATCGAAAAAAATGAA
ACGCGGTCTTGATCTTCTGCTCCTAAGCAACAGTTATATGTTGCATCTCA
CAGTCAGTAGCAGTGGGCTTCAGGATCTAGCCATAATAAAGTATGCCATG
CATTTGCATCGATAGTCAGTTGTCCAGTTGATAGGAGTGCCTGCCTGCCT
GCCTGCCTGCCTGCTTCCCATCGCTCAACACCCCGGTTTTGTCGGCGACC
GCTATTTTTTATGTTTCTGAAACTGGCCGCAGAATGCGGAGGCGGAGTCT
CTGATGCGAAGGGCAAGGGAGAGGGAGCGGCAGGGCGCCGAGCAGGACAG
CCAAAGGGAAAACGAGAGGTAGAATAAATGAAAATGTTCATGCTATGTAC
CTGCACACGAACGAGAACGAGAGAGATATACATATGGTGCGTATGTACAT
ACATACATACCGTTTTTATTTATTTTATTTTATTTTATCTTCACATCTAT
TGCCAGCACTTTAAGGGCTCCCTGCCACGACGGGCATTTTGCCAGAGCAC
TGACCCGTGGTCGCACAGAAGGGTTCCTCTCCCGGAGGTGCCCCCCCCCC
CCCCCCCCCCCCCCGCGTTTTTTTCTAAACCCCAAAAACCAACGTGGCGT
CAACCATTTTCGGTGGGGGGNNNNNNNNNNGGGGCGTTGCTCCGGACGCT
CCCCCCGGGGCCGACCGGGGGGGGCCCCCCCCGGGGGGGCCCCCCCCCCC
CCCCCCCTCGGCGGTATTTACTGAATGAACCATAAAATCATCGGGTACGT
AACCATTGTGAGTTGGGAGGAGGGCGGTGTAGGCACGACACGTGGCCATC
GATTCTTCGGCGCAGGGTTTGGGTTTGTTTATTGTGTGAAGGATGTATTT
GTGCAGTGTGAATGTCATGTCACGACGTACCCACCTAGCCGGTGACGTGA
CACGCCCTTTGCCTTTCTTGGGCTGACACGCCCTTTGCCTTCCTTGGGCG
GATGGTTTGCAGGCGGGAGCTGGAGCGTGAGCGGCAGACGCTGGCTTCGC
AGAGGGCCGCCCTTGACAAAGAGGCTGAAGCTCTGCAGCACCAAGTGTCC
GCTCTTTTGGAGCAGAGGTATGTAGAGATAGATGCATGTGGCTTGAGCAT
GGGCACGCGCACACGTGTCATCGTTCGGGGGGGGGAGGGGGGCGCGCCCT
GATGGCTGCATGCAAGAAGGTACAGATGGCTACAGTATCCAAAAATGAGT
CGTGCCACGATAGGGCTTGCATTTTAGGAGCTCAAATGGGCTCCTAAACT
TGGGGAACGACCATAAATGTTGGCAAGACCAAGTCATATTCTTATTTCTG
ATACGGAATTCACTCGCTCTTCGAAATACTTATCGTGGCGTGTTTTCTTA
ATATTCCTGCGTTTGCTTCGGGATGAGGTACAGGGCTCCTAAAACTCTAA
AAGCCGGACGCTTTTGTGTGCACCCCTATCATGGCTACAGTATCCAATGG
CCACGTTTCTTGACCACGGCGGCGTATCCTACGACTTGCCCGCCCACGCC
GCCCCTGCTTTACTTCTTCCTCTCCTGTGTCCATGTGACGGTGTTGCACT
TTCAAGAGCCGCGGCGGAGAGAGCACGCGGCCAGCACGGCAACAGCAGCG
GCGCCGACGGTCTCGTACAGGAGGCCGAGAACCGCCTCCGCCAAGCCGAG
CTCCGCCACGAGAGGGCCGAACAACGCGAAGCCGCCGCTGCCGAGCTGGA
GGAAGCCCTGCGGGCCAGCCGAGCGGACGTGTCCCGCCGAGAGGAAGCCC
TGGCCTTATCCGCGGCAGGGGCCGCCCGGACCGGGACCGCCTCTCACCAC
GTAGACGACTCTCAGCTCTCTTCCGGCGTAGCCATGGGCGGGCGGAAAAC
TGCGGCGTCGTCGTCTGCGGCGGTGGCGGCGGCAGCTGGGGTTTCGCTGG
GGGTTTCAGGTGGCCAGGGGTGGGCGTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10005:3920..7098-

>mRNA_L-elsbetiae_contig10005.54.1 ID=mRNA_L-elsbetiae_contig10005.54.1|Name=mRNA_L-elsbetiae_contig10005.54.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1950bp|location=Sequence derived from alignment at L-elsbetiae_contig10005:3920..7098- (Laminarionema elsbetiae ELsaHSoW15)
CGCCGTGTGCAGGAGCGCGAGAAGTGGCTGGAGGGCGAACAGCAGGAGCT
GGACCAGACACGCGATCGGCGCCGTGTGCAGGAGCGCGAGAAGTGGCTGG
AGGGCGAACAGCAGGAGCTGGACCAGACACGCGATCGGATGTCATCCGAA
GCGTCGCGGCTGGCGGTGAGCATCGGGGGCGTCGAGGAGCGCGTGTCCTC
CGAGGCCAAGCTAGTGCAGCAGGAGAGAGCAAACCTGGAAAAGCACAAGA
GGAGGCTGCAGGCCGGCAAGATGTCATCCGAAGCGTCGCGGCTGGCGGTG
AGCATCGGGGGCGTCGAGGAGCGCGTGTCCTCCGAGGCCAAGCTAGTGCA
GCAGGAGAGAGCAAACCTGGAAAAGCACAAGAGGAGGCTGCAGGCCGGCA
AGAGCGAGCTGGACGGGCGGCGCAAAGCCTTGGAGGCGGAGGAGAGGGCG
TTAGACGCCCGGTACAAAAACGCCGCCGCAGACCTCGATGCCGAGAACAA
GTCGGCGAGAGCGGAGTTAGCCAAGGCGAGGAAGGCGTTGGCGAGGGAAA
AGGGGGAGCTGGCCTCCAAGGCCAGAAACTCGGCGGCTGAAGCTGAGGCG
GCCGCAAGGAAGAGCGAGCTGGACGGGCGGCGCAAAGCCTTGGAGGCGGA
GGAGAGGGCGTTAGACGCCCGGTACAAAAACGCCGCCGCAGACCTCGATG
CCGAGAACAAGTCGGCGAGAGCGGAGTTAGCCAAGGCGAGGAAGGCGTTG
GCGAGGGAAAAGGGGGAGCTGGCCTCCAAGGCCAGAAACTCGGCGGCTGA
AGCTGAGGCGGCCGCAAGGAAGAATGCGGAGGCGGAGTCTCTGATGCGAA
GGGCAAGGGAGAGGGAGCGGCAGGGCGCCGAGCAGGACAGCCAAAGGGAA
AACGAGAGAATGCGGAGGCGGAGTCTCTGATGCGAAGGGCAAGGGAGAGG
GAGCGGCAGGGCGCCGAGCAGGACAGCCAAAGGGAAAACGAGAGGCGGGA
GCTGGAGCGTGAGCGGCAGACGCTGGCTTCGCAGAGGGCCGCCCTTGACA
AAGAGGCTGAAGCTCTGCAGCACCAAGTGTCCGCTCTTTTGGAGCAGAGG
CGGGAGCTGGAGCGTGAGCGGCAGACGCTGGCTTCGCAGAGGGCCGCCCT
TGACAAAGAGGCTGAAGCTCTGCAGCACCAAGTGTCCGCTCTTTTGGAGC
AGAGAGCCGCGGCGGAGAGAGCACGCGGCCAGCACGGCAACAGCAGCGGC
GCCGACGGTCTCGTACAGGAGGCCGAGAACCGCCTCCGCCAAGCCGAGCT
CCGCCACGAGAGGGCCGAACAACGCGAAGCCGCCGCTGCCGAGCTGGAGG
AAGCCCTGCGGGCCAGCCGAGCGGACGTGTCCCGCCGAGAGGAAGCCCTG
GCCTTATCCGCGGCAGGGGCCGCCCGGACCGGGACCGCCTCTCACCACGT
AGACGACTCTCAGCTCTCTTCCGGCGTAGCCATGGGCGGGCGGAAAACTG
CGGCGTCGTCGTCTGCGGCGGTGGCGGCGGCAGCTGGGGTTTCGCTGGGG
GTTTCAGGTGGCCAGGGGTGGGCGTCCAGCCGCGGCGGAGAGAGCACGCG
GCCAGCACGGCAACAGCAGCGGCGCCGACGGTCTCGTACAGGAGGCCGAG
AACCGCCTCCGCCAAGCCGAGCTCCGCCACGAGAGGGCCGAACAACGCGA
AGCCGCCGCTGCCGAGCTGGAGGAAGCCCTGCGGGCCAGCCGAGCGGACG
TGTCCCGCCGAGAGGAAGCCCTGGCCTTATCCGCGGCAGGGGCCGCCCGG
ACCGGGACCGCCTCTCACCACGTAGACGACTCTCAGCTCTCTTCCGGCGT
AGCCATGGGCGGGCGGAAAACTGCGGCGTCGTCGTCTGCGGCGGTGGCGG
CGGCAGCTGGGGTTTCGCTGGGGGTTTCAGGTGGCCAGGGGTGGGCGTCC
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