mRNA_L-elsbetiae_contig10005.53.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10005.53.1
Unique NamemRNA_L-elsbetiae_contig10005.53.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10005.53.1 vs. uniprot
Match: A0A6H5KJI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJI0_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 1.770e-36
Identity = 135/236 (57.20%), Postives = 152/236 (64.41%), Query Frame = -3 
Query:  210 QGWA-SGMQSLGLGSPIRVASPSSQ--GAGLGWHGAAGGGGPGEDGVRDTAAVVGSRPAAHGGELGVDARERQLEEWSNALAEQAGAMREQALRLETAYDRLREKEAAESXXXXXXXXXXXXXXXXXXXNKAVAGGLLPS-QGSGRHVAPREGVPAAAPLAAAAVPPDNTHGRATPDVGASRQP--KNRQLEQETVRLAEKARELDAERRRLKLAAESADREHARAQAERQEASDA 899
            QGWA  G+QSL LGS I  AS SS   G G+ W GA  G G GE+   +T              + V+ RERQLEEWSNALAEQA AMREQALRLETAYDRLRE+EA  S   XXXXXXXXXXXXXX  N A       + Q +  H  PR G   +   AAA      + G +T D  +  Q   ++R LEQETVRLAEKARELDAER RLKLAAESA++EHARAQAERQ ASDA
Sbjct: 2833 QGWAVPGLQSLALGSSILEASASSSRGGGGVNWGGAGTGDGLGENREANTGPSGARLQGGSRAGVDVETRERQLEEWSNALAEQASAMREQALRLETAYDRLREREAQPSAEHXXXXXXXXXXXXXXDKNDAADESQNNTLQTAVHHEQPRVGTDPSHARAAATPAVSGSAGGSTRDAASEGQQLQQSRHLEQETVRLAEKARELDAERHRLKLAAESAEQEHARAQAERQAASDA 3068
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BLAST of mRNA_L-elsbetiae_contig10005.53.1 vs. uniprot
Match: D7FZ31_ECTSI (Viral A-type inclusion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ31_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 5.090e-35
Identity = 124/238 (52.10%), Postives = 140/238 (58.82%), Query Frame = -3 
Query:  210 QGWA-SGMQSLGLGSPIRVASPSSQ--GAGLGWHGAAGGGGPGEDGVRDTAAVVGSRPAAHGGELGVDA--RERQLEEWSNALAEQAGAMREQALRLETAYDRLREKEAAESXXXXXXXXXXXXXXXXXXXNKAVAGGLLPSQGSGRHVAPRE-GVPAAAPLAAAAVPPDNTHGRATPDVGASRQP--KNRQLEQETVRLAEKARELDAERRRLKLAAESADREHARAQAERQEASDA 899
            QGWA  G QSL LGS IR AS SS   G G+ W GA  G GPG++   +T  + G R    G   GVD   RERQLEEWSNALAEQA AMREQALRLETAYDRLRE+EA  S                   N A       +  +G H   R  G   +   AA       +   +T D  +  Q   ++R LEQETVRLAEKARELDAER RLKLAAESA++EHARAQAERQ ASDA
Sbjct: 2832 QGWAVPGSQSLALGSSIREASASSYHGGGGVSWGGAGTGDGPGKNREANTG-LSGVRLQG-GSRAGVDVETRERQLEEWSNALAEQASAMREQALRLETAYDRLREREAQPSFEHHESERHRGGGGGEADKNDAADESQSITLQTGMHHEQRRVGTDPSQARAATTPAVAGSAVGSTRDAASESQQLQQSRHLEQETVRLAEKARELDAERHRLKLAAESAEKEHARAQAERQAASDA 3067
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10005.53.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJI0_9PHAE1.770e-3657.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZ31_ECTSI5.090e-3552.10Viral A-type inclusion protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10005contigL-elsbetiae_contig10005:3036..3936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size903
Cds size615
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815234.7966971-CDS-L-elsbetiae_contig10005:3035..36501622815234.7966971-CDS-L-elsbetiae_contig10005:3035..3650Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10005 3036..3650 +
1691682785.9890916-CDS-L-elsbetiae_contig10005:3035..36501691682785.9890916-CDS-L-elsbetiae_contig10005:3035..3650Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10005 3036..3650 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815234.8104231-UTR-L-elsbetiae_contig10005:3650..39361622815234.8104231-UTR-L-elsbetiae_contig10005:3650..3936Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10005 3651..3936 +
1691682785.9990616-UTR-L-elsbetiae_contig10005:3650..39361691682785.9990616-UTR-L-elsbetiae_contig10005:3650..3936Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10005 3651..3936 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10005.53.1prot_L-elsbetiae_contig10005.53.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10005 3036..3650 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10005.53.1

>prot_L-elsbetiae_contig10005.53.1 ID=prot_L-elsbetiae_contig10005.53.1|Name=mRNA_L-elsbetiae_contig10005.53.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=205bp
PLSCAAFRVSAAASPPATLSFSLRERARSVASLPLSAARRLLSAASPPFS
ASSRVRSRSSSTLSAAASFRASEASCRSACALACSRSADSAASLRRRLSA
SSSLAFSASRTVSCSSWRFFGCRLAPTSGVARPCVLSGGTAAAARGAAAG
TPSRGATCRPLPCEGSRPPATALFSSGPPPPRRPSGACAAADDDSAASFS
RSRS*
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mRNA from alignment at L-elsbetiae_contig10005:3036..3936+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10005.53.1 ID=mRNA_L-elsbetiae_contig10005.53.1|Name=mRNA_L-elsbetiae_contig10005.53.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=901bp|location=Sequence derived from alignment at L-elsbetiae_contig10005:3036..3936+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCTCAGTTGTGCTGCTTTCCGGGTCTCGGCGGCGGCATCCCCGCCAGC
GACGTTATCGTTCTCTCTACGAGAACGCGCCCGTTCTGTGGCGAGCCTGC
CTCTCTCCGCGGCCAGGAGGCTCCTCTCCGCCGCCAGCCCTCCCTTCTCA
GCGTCCAGCCGCGTTCGCTCCCGCTCCAGCTCGACCCTGAGCGCGGCCGC
GTCCTTCCGGGCATCCGAGGCCTCTTGCCGCTCCGCCTGCGCCCTGGCAT
GCTCTCGGTCGGCGGACTCGGCCGCCAGCTTGAGGCGACGCCTCTCCGCG
TCGAGCTCCCTCGCTTTCTCGGCAAGCCGGACGGTTTCCTGCTCCAGCTG
GCGGTTCTTCGGCTGCCGGCTTGCGCCGACGTCGGGGGTTGCGCGGCCGT
GCGTATTGTCGGGGGGCACGGCCGCCGCGGCTAGGGGCGCCGCAGCGGGC
ACCCCTTCTCGCGGCGCAACATGCCGGCCGCTTCCTTGCGAAGGAAGCAG
ACCGCCGGCGACAGCTTTATTCTCCTCCGGTCCACCACCGCCACGCCGCC
CTTCCGGCGCCTGCGCCGCCGCCGACGACGACTCGGCGGCCTCCTTCTCC
CGCAGCCGGTCGTAGGCGGTCTCCAGCCTCAGCGCCTGCTCCCTCATCGC
CCCGGCTTGCTCGGCCAGAGCGTTGGACCACTCCTCGAGCTGCCGCTCTC
GCGCATCCACGCCCAGCTCCCCCCCGTGGGCAGCGGGCCTGCTCCCGACT
ACCGCAGCGGTGTCGCGAACCCCATCCTCGCCAGGCCCGCCGCCGCCGGC
TGCCCCGTGCCAGCCGAGACCCGCGCCCTGGGAAGAAGGAGAGGCTACGC
GGATCGGCGAGCCGAGCCCGAGCGACTGCATGCCGGACGCCCACCCCTGG
C
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10005:3036..3936+

>mRNA_L-elsbetiae_contig10005.53.1 ID=mRNA_L-elsbetiae_contig10005.53.1|Name=mRNA_L-elsbetiae_contig10005.53.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1230bp|location=Sequence derived from alignment at L-elsbetiae_contig10005:3036..3936+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCTCAGTTGTGCTGCTTTCCGGGTCTCGGCGGCGGCATCCCCGCCAGC
GACGTTATCGTTCTCTCTACGAGAACGCGCCCGTTCTGTGGCGAGCCTGC
CTCTCTCCGCGGCCAGGAGGCTCCTCTCCGCCGCCAGCCCTCCCTTCTCA
GCGTCCAGCCGCGTTCGCTCCCGCTCCAGCTCGACCCTGAGCGCGGCCGC
GTCCTTCCGGGCATCCGAGGCCTCTTGCCGCTCCGCCTGCGCCCTGGCAT
GCTCTCGGTCGGCGGACTCGGCCGCCAGCTTGAGGCGACGCCTCTCCGCG
TCGAGCTCCCTCGCTTTCTCGGCAAGCCGGACGGTTTCCTGCTCCAGCTG
GCGGTTCTTCGGCTGCCGGCTTGCGCCGACGTCGGGGGTTGCGCGGCCGT
GCGTATTGTCGGGGGGCACGGCCGCCGCGGCTAGGGGCGCCGCAGCGGGC
ACCCCTTCTCGCGGCGCAACATGCCGGCCGCTTCCTTGCGAAGGAAGCAG
ACCGCCGGCGACAGCTTTATTCTCCTCCGGTCCACCACCGCCACGCCGCC
CTTCCGGCGCCTGCGCCGCCGCCGACGACGACTCGGCGGCCTCCTTCTCC
CGCAGCCGGTCGTAGCCCCTCAGTTGTGCTGCTTTCCGGGTCTCGGCGGC
GGCATCCCCGCCAGCGACGTTATCGTTCTCTCTACGAGAACGCGCCCGTT
CTGTGGCGAGCCTGCCTCTCTCCGCGGCCAGGAGGCTCCTCTCCGCCGCC
AGCCCTCCCTTCTCAGCGTCCAGCCGCGTTCGCTCCCGCTCCAGCTCGAC
CCTGAGCGCGGCCGCGTCCTTCCGGGCATCCGAGGCCTCTTGCCGCTCCG
CCTGCGCCCTGGCATGCTCTCGGTCGGCGGACTCGGCCGCCAGCTTGAGG
CGACGCCTCTCCGCGTCGAGCTCCCTCGCTTTCTCGGCAAGCCGGACGGT
TTCCTGCTCCAGCTGGCGGTTCTTCGGCTGCCGGCTTGCGCCGACGTCGG
GGGTTGCGCGGCCGTGCGTATTGTCGGGGGGCACGGCCGCCGCGGCTAGG
GGCGCCGCAGCGGGCACCCCTTCTCGCGGCGCAACATGCCGGCCGCTTCC
TTGCGAAGGAAGCAGACCGCCGGCGACAGCTTTATTCTCCTCCGGTCCAC
CACCGCCACGCCGCCCTTCCGGCGCCTGCGCCGCCGCCGACGACGACTCG
GCGGCCTCCTTCTCCCGCAGCCGGTCGTAG
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