mRNA_L-elsbetiae_contig1000.51.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1000.51.1
Unique NamemRNA_L-elsbetiae_contig1000.51.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1000.51.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1000contigL-elsbetiae_contig1000:23523..24012 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size491
Cds size363
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815234.3670619-UTR-L-elsbetiae_contig1000:23522..236491622815234.3670619-UTR-L-elsbetiae_contig1000:23522..23649Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1000 23523..23649 +
1691682785.5557303-UTR-L-elsbetiae_contig1000:23522..236491691682785.5557303-UTR-L-elsbetiae_contig1000:23522..23649Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1000 23523..23649 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815234.3825922-CDS-L-elsbetiae_contig1000:23649..240121622815234.3825922-CDS-L-elsbetiae_contig1000:23649..24012Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1000 23650..24012 +
1691682785.6186574-CDS-L-elsbetiae_contig1000:23649..240121691682785.6186574-CDS-L-elsbetiae_contig1000:23649..24012Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1000 23650..24012 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1000.51.1prot_L-elsbetiae_contig1000.51.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1000 23650..24012 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1000.51.1

>prot_L-elsbetiae_contig1000.51.1 ID=prot_L-elsbetiae_contig1000.51.1|Name=mRNA_L-elsbetiae_contig1000.51.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
MFRRTSSVPSCLVSIGIKRCRRRLIGMRGRRRKAGEEKRAVQVSKRCRRR
CRCRRRRLGRAEPVQPCHCRCCWFRRARLTVNGDLLGARPAAKEEEDAAV
GASPLRAGSSTTISGRHGGKG
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mRNA from alignment at L-elsbetiae_contig1000:23523..24012+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1000.51.1 ID=mRNA_L-elsbetiae_contig1000.51.1|Name=mRNA_L-elsbetiae_contig1000.51.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=490bp|location=Sequence derived from alignment at L-elsbetiae_contig1000:23523..24012+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCGAGCCCGCCGTCATTCGTCGGCACCCTCGCCGGACAGGTGGTGCAG
AAAACCGGCTCAACAATAACAGCCCCGGCTCTCTGGTGGGCTTGTAGCTT
CGCCGCCGCTCCCGCGGGCGGCGCGCCATGTTCCGGCGCACTAGCAGCGT
TCCTTCCTGTCTCGTCTCCATCGGAATAAAACGTTGCCGTCGTCGTCTTA
TTGGGATGCGGGGCAGAAGAAGAAAGGCCGGTGAAGAAAAACGCGCCGTC
CAGGTCTCCAAGCGTTGCCGCCGCCGCTGCCGCTGCCGCCGCCGGCGGCT
TGGTCGGGCCGAGCCCGTGCAGCCTTGTCACTGCCGCTGCTGTTGGTTTC
GGAGAGCTCGCTTGACAGTGAACGGCGACCTGCTTGGTGCTCGGCCGGCA
GCCAAAGAGGAGGAAGACGCAGCTGTCGGCGCAAGTCCTCTTCGTGCCGG
CAGCAGCACCACCATCAGCGGGCGGCATGGCGGTAAAGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1000:23523..24012+

>mRNA_L-elsbetiae_contig1000.51.1 ID=mRNA_L-elsbetiae_contig1000.51.1|Name=mRNA_L-elsbetiae_contig1000.51.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig1000:23523..24012+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCCGGCGCACTAGCAGCGTTCCTTCCTGTCTCGTCTCCATCGGAAT
AAAACGTTGCCGTCGTCGTCTTATTGGGATGCGGGGCAGAAGAAGAAAGG
CCGGTGAAGAAAAACGCGCCGTCCAGGTCTCCAAGCGTTGCCGCCGCCGC
TGCCGCTGCCGCCGCCGGCGGCTTGGTCGGGCCGAGCCCGTGCAGCCTTG
TCACTGCCGCTGCTGTTGGTTTCGGAGAGCTCGCTTGACAGTGAACGGCG
ACCTGCTTGGTGCTCGGCCGGCAGCCAAAGAGGAGGAAGACGCAGCTGTC
GGCGCAAGTCCTCTTCGTGCCGGCAGCAGCACCACCATCAGCGGGCGGCA
TGGCGGTAAAGGAATGTTCCGGCGCACTAGCAGCGTTCCTTCCTGTCTCG
TCTCCATCGGAATAAAACGTTGCCGTCGTCGTCTTATTGGGATGCGGGGC
AGAAGAAGAAAGGCCGGTGAAGAAAAACGCGCCGTCCAGGTCTCCAAGCG
TTGCCGCCGCCGCTGCCGCTGCCGCCGCCGGCGGCTTGGTCGGGCCGAGC
CCGTGCAGCCTTGTCACTGCCGCTGCTGTTGGTTTCGGAGAGCTCGCTTG
ACAGTGAACGGCGACCTGCTTGGTGCTCGGCCGGCAGCCAAAGAGGAGGA
AGACGCAGCTGTCGGCGCAAGTCCTCTTCGTGCCGGCAGCAGCACCACCA
TCAGCGGGCGGCATGGCGGTAAAGGA
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