mRNA_L-elsbetiae_contig10.22.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10.22.1
Unique NamemRNA_L-elsbetiae_contig10.22.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig10.22.1 vs. uniprot
Match: D1J796_ECTSI (ATP synthase subunit delta, chloroplastic n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J796_ECTSI)

HSP 1 Score: 356 bits (914), Expect = 1.620e-123
Identity = 184/204 (90.20%), Postives = 196/204 (96.08%), Query Frame = 1
Query:    1 MANTMFGSKIANPYSEALLQLGLDLYLKEENADTQVFFQIIFDMENLLNILKITPTLEKYLANPLVADKDKKNVLIKCLTTKTSSTTISFLMLLVKNKRIGFLQIITQTFLNKAYDFVCLKFVEVYSASVLSKDQKNQLVEKLKILLGPEFTTSKTYYSKINVTFRIDKEILGGFIIKVDSKIIDLSLRGELEGLARKMEINLL 612
            MANTMFG+KIANPYSEALLQLGLDLYLKE+NADTQVFFQIIFDMENLL ILKITPTLEKYLANPL+ DKDKKNVL KCLTTKTS+TT +FLMLLV  KRIGF+QIITQTFLNKAY+FVCLKFVEVYSAS+LSKDQK QLVEKLKILLGPEFTTSK YYSKINVTF+IDKE+LGGFIIKVDSKIIDLSLRGE+EGLAR+MEINLL
Sbjct:    1 MANTMFGAKIANPYSEALLQLGLDLYLKEDNADTQVFFQIIFDMENLLTILKITPTLEKYLANPLIKDKDKKNVLNKCLTTKTSATTKNFLMLLVDKKRIGFIQIITQTFLNKAYNFVCLKFVEVYSASLLSKDQKAQLVEKLKILLGPEFTTSKVYYSKINVTFKIDKELLGGFIIKVDSKIIDLSLRGEIEGLARQMEINLL 204          
BLAST of mRNA_L-elsbetiae_contig10.22.1 vs. uniprot
Match: A0A7T8G496_SCYLO (ATP synthase subunit delta, chloroplastic n=11 Tax=Phaeophyceae TaxID=2870 RepID=A0A7T8G496_SCYLO)

HSP 1 Score: 348 bits (893), Expect = 2.570e-120
Identity = 179/204 (87.75%), Postives = 193/204 (94.61%), Query Frame = 1
Query:    1 MANTMFGSKIANPYSEALLQLGLDLYLKEENADTQVFFQIIFDMENLLNILKITPTLEKYLANPLVADKDKKNVLIKCLTTKTSSTTISFLMLLVKNKRIGFLQIITQTFLNKAYDFVCLKFVEVYSASVLSKDQKNQLVEKLKILLGPEFTTSKTYYSKINVTFRIDKEILGGFIIKVDSKIIDLSLRGELEGLARKMEINLL 612
            MANTMFGSKIANPYSEALLQLGLDLYLKEENADTQVFFQIIFDMENLL +LK+TPTLEKYLANPL+ DK+KK+VL KCLT KTS TT  FLMLLV  KRIGFL+IITQTFLNKAY+FVCLKFVEVYSAS+LSKDQK QL+EKLKILLGPEFTTSK YYSKINVTF+IDKEILGGFIIKVDSKIIDLSLRGELEGLA++ME++LL
Sbjct:    1 MANTMFGSKIANPYSEALLQLGLDLYLKEENADTQVFFQIIFDMENLLTLLKLTPTLEKYLANPLIKDKEKKDVLNKCLTAKTSPTTKHFLMLLVDKKRIGFLEIITQTFLNKAYNFVCLKFVEVYSASLLSKDQKTQLIEKLKILLGPEFTTSKVYYSKINVTFKIDKEILGGFIIKVDSKIIDLSLRGELEGLAKQMEVSLL 204          
BLAST of mRNA_L-elsbetiae_contig10.22.1 vs. uniprot
Match: A0A0R6MDT5_UNDPI (ATP synthase subunit delta, chloroplastic n=23 Tax=Phaeophyceae TaxID=2870 RepID=A0A0R6MDT5_UNDPI)

HSP 1 Score: 342 bits (876), Expect = 1.000e-117
Identity = 178/204 (87.25%), Postives = 189/204 (92.65%), Query Frame = 1
Query:    1 MANTMFGSKIANPYSEALLQLGLDLYLKEENADTQVFFQIIFDMENLLNILKITPTLEKYLANPLVADKDKKNVLIKCLTTKTSSTTISFLMLLVKNKRIGFLQIITQTFLNKAYDFVCLKFVEVYSASVLSKDQKNQLVEKLKILLGPEFTTSKTYYSKINVTFRIDKEILGGFIIKVDSKIIDLSLRGELEGLARKMEINLL 612
            MANTMFGSKIANPYSEALLQLGL+LYLKEENADTQVFFQIIFDMENLL ILK+TP LEKYLANPL+ DKDKKNVL KCL  KTSSTT +FLMLLV  KRIGFLQII QTFLNKAYDFVCLKFVEVYSAS LSK+Q+ QL EKLKILLGPEFTTSK YYSKIN+TFRIDKEILGGFIIKVDSKIIDLSLRGELE LA++ME++LL
Sbjct:    1 MANTMFGSKIANPYSEALLQLGLNLYLKEENADTQVFFQIIFDMENLLTILKLTPVLEKYLANPLIQDKDKKNVLEKCLPKKTSSTTKNFLMLLVDKKRIGFLQIIIQTFLNKAYDFVCLKFVEVYSASPLSKEQQTQLKEKLKILLGPEFTTSKVYYSKINITFRIDKEILGGFIIKVDSKIIDLSLRGELESLAKQMEVSLL 204          
BLAST of mRNA_L-elsbetiae_contig10.22.1 vs. uniprot
Match: A0A8F0FAK1_9PHAE (CF1 subunit delta n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAK1_9PHAE)

HSP 1 Score: 331 bits (848), Expect = 1.850e-113
Identity = 171/204 (83.82%), Postives = 187/204 (91.67%), Query Frame = 1
Query:    1 MANTMFGSKIANPYSEALLQLGLDLYLKEENADTQVFFQIIFDMENLLNILKITPTLEKYLANPLVADKDKKNVLIKCLTTKTSSTTISFLMLLVKNKRIGFLQIITQTFLNKAYDFVCLKFVEVYSASVLSKDQKNQLVEKLKILLGPEFTTSKTYYSKINVTFRIDKEILGGFIIKVDSKIIDLSLRGELEGLARKMEINLL 612
            MANTMFG+KIANPYSEALLQLGL+LYLKEENADTQ+FFQIIFDMENLL ILK+TP LEKYL+NPL+ +KDKK+VL KCLT KTSSTT +FLMLLV  KRIGF+ IITQTFLNKAYDFVCLKFVEV SA  L K+QK +L+EKLKILLGPEFTTSK YYSKINVTF+IDKEILGGFIIKVDSKIIDLSLRGELE LA++ME NLL
Sbjct:    1 MANTMFGAKIANPYSEALLQLGLNLYLKEENADTQIFFQIIFDMENLLAILKLTPVLEKYLSNPLIPNKDKKDVLEKCLTKKTSSTTKNFLMLLVDKKRIGFISIITQTFLNKAYDFVCLKFVEVCSAHSLDKEQKTKLIEKLKILLGPEFTTSKVYYSKINVTFKIDKEILGGFIIKVDSKIIDLSLRGELESLAKQMETNLL 204          
BLAST of mRNA_L-elsbetiae_contig10.22.1 vs. uniprot
Match: D1GJI1_FUCVE (ATP synthase subunit delta, chloroplastic n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJI1_FUCVE)

HSP 1 Score: 326 bits (836), Expect = 1.240e-111
Identity = 168/204 (82.35%), Postives = 184/204 (90.20%), Query Frame = 1
Query:    1 MANTMFGSKIANPYSEALLQLGLDLYLKEENADTQVFFQIIFDMENLLNILKITPTLEKYLANPLVADKDKKNVLIKCLTTKTSSTTISFLMLLVKNKRIGFLQIITQTFLNKAYDFVCLKFVEVYSASVLSKDQKNQLVEKLKILLGPEFTTSKTYYSKINVTFRIDKEILGGFIIKVDSKIIDLSLRGELEGLARKMEINLL 612
            MANTMFGSKIANPYSEALLQLGL+LYLKE+N DTQVFFQIIFDMENLL +LK+TP LEKYL+NPL+ D DKKNVL KC T KTS+TT  FLMLLV  KRIGFLQ I QTFLNKAYDFVCLKFVEVYSA  L+K+QK QLVE+LKILLGPEFTTSK YYSKINVTFR+DKEILGGFIIKVDSKIIDLSLRGELE LA+++E +L+
Sbjct:    1 MANTMFGSKIANPYSEALLQLGLNLYLKEKNTDTQVFFQIIFDMENLLTLLKLTPVLEKYLSNPLIPDNDKKNVLEKCFTKKTSNTTKKFLMLLVDKKRIGFLQTIIQTFLNKAYDFVCLKFVEVYSAYPLNKEQKEQLVERLKILLGPEFTTSKVYYSKINVTFRVDKEILGGFIIKVDSKIIDLSLRGELECLAKQLETSLV 204          
BLAST of mRNA_L-elsbetiae_contig10.22.1 vs. uniprot
Match: A0A1I9LVE7_9PHAE (ATP synthase subunit delta, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVE7_9PHAE)

HSP 1 Score: 317 bits (811), Expect = 8.260e-108
Identity = 165/205 (80.49%), Postives = 184/205 (89.76%), Query Frame = 1
Query:    1 MANTMFGSKIANPYSEALLQLGLDLYLKEENAD-TQVFFQIIFDMENLLNILKITPTLEKYLANPLVADKDKKNVLIKCLTTKTSSTTISFLMLLVKNKRIGFLQIITQTFLNKAYDFVCLKFVEVYSASVLSKDQKNQLVEKLKILLGPEFTTSKTYYSKINVTFRIDKEILGGFIIKVDSKIIDLSLRGELEGLARKMEINLL 612
            MAN MFGSKIANPYS+ALLQLGLDLYLKE+NAD T+V F+IIFDMENLL ILKITP LEKYLANPL+ D +KKN+L KCL  K S T  +FLMLLV  KRIGFLQIIT+TFLNKAY FVCLKF EVYSAS+L+K+QK +L++KLKILLGPEFTTSK YYSKINVTF+ID E+LGGFIIKVDSKIIDLSLRGE+EGLAR+MEINLL
Sbjct:    1 MANMMFGSKIANPYSDALLQLGLDLYLKEKNADDTEVIFRIIFDMENLLIILKITPILEKYLANPLITDNEKKNILNKCLPVKGSPTVKNFLMLLVDKKRIGFLQIITETFLNKAYSFVCLKFAEVYSASLLNKEQKLELIKKLKILLGPEFTTSKVYYSKINVTFKIDPELLGGFIIKVDSKIIDLSLRGEIEGLARQMEINLL 205          
BLAST of mRNA_L-elsbetiae_contig10.22.1 vs. uniprot
Match: A0A141BSE0_9PHAE (ATP synthase subunit delta, chloroplastic n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSE0_9PHAE)

HSP 1 Score: 315 bits (806), Expect = 4.610e-107
Identity = 161/204 (78.92%), Postives = 185/204 (90.69%), Query Frame = 1
Query:    1 MANTMFGSKIANPYSEALLQLGLDLYLKEENADTQVFFQIIFDMENLLNILKITPTLEKYLANPLVADKDKKNVLIKCLTTKTSSTTISFLMLLVKNKRIGFLQIITQTFLNKAYDFVCLKFVEVYSASVLSKDQKNQLVEKLKILLGPEFTTSKTYYSKINVTFRIDKEILGGFIIKVDSKIIDLSLRGELEGLARKMEINLL 612
            MANT+ G KIANPYSEALLQLGL+LYLKE+ ADTQVFFQIIFDMENLL +LK+TP LEKYL+NPL+  +DKKNVL KCLT KTS TT +FLMLLV  KRIGF++ I Q FLNKAY+FVCLKFVEVYSASVL+++QK+QL+EKLKILLGP+F TSK YYSKINVTFRIDKEILGGFIIKVDSKIIDLSLRGEL+GLA+++E +L+
Sbjct:    1 MANTIVGFKIANPYSEALLQLGLNLYLKEDRADTQVFFQIIFDMENLLTLLKLTPVLEKYLSNPLIPGEDKKNVLEKCLTKKTSITTRNFLMLLVDKKRIGFIEPIIQIFLNKAYEFVCLKFVEVYSASVLTQNQKDQLIEKLKILLGPQFITSKVYYSKINVTFRIDKEILGGFIIKVDSKIIDLSLRGELDGLAKQLETSLI 204          
BLAST of mRNA_L-elsbetiae_contig10.22.1 vs. uniprot
Match: A0A8F0F717_9PHAE (CF1 subunit delta n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F717_9PHAE)

HSP 1 Score: 304 bits (778), Expect = 8.170e-103
Identity = 158/203 (77.83%), Postives = 178/203 (87.68%), Query Frame = 1
Query:    1 MANTMFGSKIANPYSEALLQLGLDLYLKEENADTQVFFQIIFDMENLLNILKITPTLEKYLANPLVADKDKKNVLIKCLTTKTSSTTISFLMLLVKNKRIGFLQIITQTFLNKAYDFVCLKFVEVYSASVLSKDQKNQLVEKLKILLGPEFTTSKTYYSKINVTFRIDKEILGGFIIKVDSKIIDLSLRGELEGLARKMEINL 609
            M+N + GSKIANPY+EALLQLGL+LY++EEN DTQVFFQIIFDMENLL +LK+TP LE YL NPLV DK+KKNVL KCLT K SSTT +FLMLLV  KRIGFL+ I QTFLNKAYDFVCLKFVEVYSA +L+K+QK QLVEKLKILLGPEFTTS  YY KI V F +DKE+LGGFIIKVDSKIIDLSLRGEL+ LA++MEIN+
Sbjct:    1 MSNAIVGSKIANPYAEALLQLGLNLYIQEEN-DTQVFFQIIFDMENLLTLLKLTPVLEDYLGNPLVPDKNKKNVLEKCLTQKVSSTTRNFLMLLVDKKRIGFLEPIIQTFLNKAYDFVCLKFVEVYSAFLLTKEQKKQLVEKLKILLGPEFTTSTVYYPKITVVFNLDKEVLGGFIIKVDSKIIDLSLRGELQALAKQMEINI 202          
BLAST of mRNA_L-elsbetiae_contig10.22.1 vs. uniprot
Match: A0A8E5XRC3_9PHAE (ATP synthase subunit delta, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRC3_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 7.670e-68
Identity = 111/203 (54.68%), Postives = 154/203 (75.86%), Query Frame = 1
Query:    1 MANTMFGSKIANPYSEALLQLGLDLYLKEENADTQVFFQIIFDMENLLNILKITPTLEKYLANPLVADKDKKNVLIKCLTTKTSSTTISFLMLLVKNKRIGFLQIITQTFLNKAYDFVCLKFVEVYSASVLSKDQKNQLVEKLKILLGPEFTTSKT--YYSKINVTFRIDKEILGGFIIKVDSKIIDLSLRGELEGLARKMEI 603
            M NT+  +KIA+PYSEAL QLGL LYLKE N +  +FFQIIFD+++LL +L+ TP L++YL NPL++ K+KK +L KCL  +TS  T +FL LLV  KRI F++II QTF++KAY+FVCLKFVE+ S   LSK Q+  L+ KL+++LGPE T       Y  I ++ R+DK++LGGF+IK+ SKIIDLSL+GEL+ L++++ +
Sbjct:    2 MTNTIINAKIASPYSEALFQLGLGLYLKENNPN--LFFQIIFDIQDLLTLLRATPVLQEYLVNPLISSKNKKVILEKCLREETSLHTKNFLNLLVDQKRIEFVEIIAQTFMDKAYEFVCLKFVEICSTYELSKAQQKALIRKLRVILGPEVTGPDVDVQYPNIALSLRVDKDLLGGFVIKIGSKIIDLSLKGELQELSKQLNV 202          
BLAST of mRNA_L-elsbetiae_contig10.22.1 vs. uniprot
Match: A0A7S6ZPB6_9STRA (ATP synthase subunit delta, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPB6_9STRA)

HSP 1 Score: 189 bits (481), Expect = 1.000e-57
Identity = 92/203 (45.32%), Postives = 147/203 (72.41%), Query Frame = 1
Query:    1 MANTMFGSKIANPYSEALLQLGLDLYLKEENADTQVFFQIIFDMENLLNILKITPTLEKYLANPLVADKDKKNVLIKCLTTKTSSTTISFLMLLVKNKRIGFLQIITQTFLNKAYDFVCLKFVEVYSASVLSKDQKNQLVEKLKILLGPEFTTSKTYYSKINVTFRIDKEILGGFIIKVDSKIIDLSLRGELEGLARKMEINL 609
            M    +GS I  PY+EAL QLGL  ++++ N+    FF+I+FDM++L  +LK TP + +YL+NPL+++ +KK +L++CL  K S+ T +FL LLV  KRI +++ ITQ FL K Y+FVC+KF+++++   +S+ Q+ +L+ KL + L P+F+       K+N+T +IDK +LGGFI+ +DS+IIDLSL+GEL+ LA+++E+ L
Sbjct:    1 MTTRKYGSNIGRPYAEALYQLGLSFFIEKNNSTE--FFKIVFDMQDLSTLLKTTPIVSEYLSNPLISNDNKKVILMQCLGKKASTNTKNFLKLLVDKKRISYIEGITQVFLEKIYNFVCIKFIDLWATYDVSEPQQQRLINKLILFLEPDFSKCHGKLPKVNLTVKIDKNLLGGFILVMDSQIIDLSLKGELQRLAKQLEVTL 201          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J796_ECTSI1.620e-12390.20ATP synthase subunit delta, chloroplastic n=2 Tax=... [more]
A0A7T8G496_SCYLO2.570e-12087.75ATP synthase subunit delta, chloroplastic n=11 Tax... [more]
A0A0R6MDT5_UNDPI1.000e-11787.25ATP synthase subunit delta, chloroplastic n=23 Tax... [more]
A0A8F0FAK1_9PHAE1.850e-11383.82CF1 subunit delta n=1 Tax=Desmarestia aculeata Tax... [more]
D1GJI1_FUCVE1.240e-11182.35ATP synthase subunit delta, chloroplastic n=3 Tax=... [more]
A0A1I9LVE7_9PHAE8.260e-10880.49ATP synthase subunit delta, chloroplastic n=1 Tax=... [more]
A0A141BSE0_9PHAE4.610e-10778.92ATP synthase subunit delta, chloroplastic n=14 Tax... [more]
A0A8F0F717_9PHAE8.170e-10377.83CF1 subunit delta n=1 Tax=Protohalopteris sp. TaxI... [more]
A0A8E5XRC3_9PHAE7.670e-6854.68ATP synthase subunit delta, chloroplastic n=1 Tax=... [more]
A0A7S6ZPB6_9STRA1.000e-5745.32ATP synthase subunit delta, chloroplastic n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10contigL-elsbetiae_contig10:42453..43073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score354.4
Seed ortholog evalue3.7e-95
Seed eggNOG ortholog2880.D1J796
Preferred nameATPD
KEGG rclassRC00002,RC00043,RC00087
KEGG koko:K02111,ko:K02113,ko:K12524
KEGG TC3.A.2.1
KEGG ReactionR00480,R01773,R01775
KEGG Pathwayko00190,ko00195,ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00190,map00195,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01230
KEGG ModuleM00016,M00017,M00018,M00157,M00526,M00527
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009266,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009719,GO:0009725,GO:0009735,GO:0009767,GO:0009772,GO:0009773,GO:0009941,GO:0009987,GO:0010033,GO:0010287,GO:0010319,GO:0015979,GO:0016020,GO:0019684,GO:0022900,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042221,GO:0042651,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051704,GO:0051707,GO:0055035,GO:0055114,GO:0098542
EggNOG free text desc.proton-transporting ATP synthase activity, rotational mechanism
EggNOG OGsCOG0712@1,KOG1662@2759
EC1.1.1.3,2.7.2.4,3.6.3.14
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194,ko01000
Exons1
Model size621
Cds size621
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815232.2252276-CDS-L-elsbetiae_contig10:42452..430731622815232.2252276-CDS-L-elsbetiae_contig10:42452..43073Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10 42453..43073 +
1691682784.053631-CDS-L-elsbetiae_contig10:42452..430731691682784.053631-CDS-L-elsbetiae_contig10:42452..43073Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10 42453..43073 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10.22.1prot_L-elsbetiae_contig10.22.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10 42453..43073 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10.22.1

>prot_L-elsbetiae_contig10.22.1 ID=prot_L-elsbetiae_contig10.22.1|Name=mRNA_L-elsbetiae_contig10.22.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=207bp
MANTMFGSKIANPYSEALLQLGLDLYLKEENADTQVFFQIIFDMENLLNI
LKITPTLEKYLANPLVADKDKKNVLIKCLTTKTSSTTISFLMLLVKNKRI
GFLQIITQTFLNKAYDFVCLKFVEVYSASVLSKDQKNQLVEKLKILLGPE
FTTSKTYYSKINVTFRIDKEILGGFIIKVDSKIIDLSLRGELEGLARKME
INLLES*
back to top

mRNA from alignment at L-elsbetiae_contig10:42453..43073+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10.22.1 ID=mRNA_L-elsbetiae_contig10.22.1|Name=mRNA_L-elsbetiae_contig10.22.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=621bp|location=Sequence derived from alignment at L-elsbetiae_contig10:42453..43073+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTAATACAATGTTTGGTTCAAAAATTGCAAACCCATATTCTGAGGC CTTGTTACAATTAGGCTTAGACTTATACTTAAAAGAAGAAAATGCTGACA CTCAAGTTTTCTTCCAAATTATTTTTGATATGGAAAACTTACTAAACATA TTAAAAATAACGCCAACTTTAGAAAAGTATTTAGCGAATCCTTTGGTTGC TGATAAGGATAAAAAAAACGTTTTAATAAAATGTTTGACGACAAAAACAA GTTCTACAACAATAAGCTTTTTAATGTTATTAGTAAAAAACAAAAGAATA GGTTTTCTCCAAATTATCACACAAACTTTTTTGAATAAAGCTTATGATTT TGTCTGTCTAAAATTTGTAGAAGTATATTCCGCTTCTGTGTTAAGTAAAG ATCAAAAAAACCAATTAGTGGAGAAACTTAAAATATTATTAGGTCCTGAG TTTACAACTTCTAAAACTTATTATTCTAAAATTAATGTAACCTTTAGAAT AGATAAAGAAATTTTAGGTGGTTTTATTATTAAAGTTGATTCTAAGATAA TTGATTTAAGTTTACGTGGTGAACTAGAAGGTTTAGCTCGAAAAATGGAG ATAAACTTATTAGAATCATAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig10:42453..43073+

>mRNA_L-elsbetiae_contig10.22.1 ID=mRNA_L-elsbetiae_contig10.22.1|Name=mRNA_L-elsbetiae_contig10.22.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1242bp|location=Sequence derived from alignment at L-elsbetiae_contig10:42453..43073+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTAATACAATGTTTGGTTCAAAAATTGCAAACCCATATTCTGAGGC
CTTGTTACAATTAGGCTTAGACTTATACTTAAAAGAAGAAAATGCTGACA
CTCAAGTTTTCTTCCAAATTATTTTTGATATGGAAAACTTACTAAACATA
TTAAAAATAACGCCAACTTTAGAAAAGTATTTAGCGAATCCTTTGGTTGC
TGATAAGGATAAAAAAAACGTTTTAATAAAATGTTTGACGACAAAAACAA
GTTCTACAACAATAAGCTTTTTAATGTTATTAGTAAAAAACAAAAGAATA
GGTTTTCTCCAAATTATCACACAAACTTTTTTGAATAAAGCTTATGATTT
TGTCTGTCTAAAATTTGTAGAAGTATATTCCGCTTCTGTGTTAAGTAAAG
ATCAAAAAAACCAATTAGTGGAGAAACTTAAAATATTATTAGGTCCTGAG
TTTACAACTTCTAAAACTTATTATTCTAAAATTAATGTAACCTTTAGAAT
AGATAAAGAAATTTTAGGTGGTTTTATTATTAAAGTTGATTCTAAGATAA
TTGATTTAAGTTTACGTGGTGAACTAGAAGGTTTAGCTCGAAAAATGGAG
ATAAACTTATTAGAATCATAGATGGCTAATACAATGTTTGGTTCAAAAAT
TGCAAACCCATATTCTGAGGCCTTGTTACAATTAGGCTTAGACTTATACT
TAAAAGAAGAAAATGCTGACACTCAAGTTTTCTTCCAAATTATTTTTGAT
ATGGAAAACTTACTAAACATATTAAAAATAACGCCAACTTTAGAAAAGTA
TTTAGCGAATCCTTTGGTTGCTGATAAGGATAAAAAAAACGTTTTAATAA
AATGTTTGACGACAAAAACAAGTTCTACAACAATAAGCTTTTTAATGTTA
TTAGTAAAAAACAAAAGAATAGGTTTTCTCCAAATTATCACACAAACTTT
TTTGAATAAAGCTTATGATTTTGTCTGTCTAAAATTTGTAGAAGTATATT
CCGCTTCTGTGTTAAGTAAAGATCAAAAAAACCAATTAGTGGAGAAACTT
AAAATATTATTAGGTCCTGAGTTTACAACTTCTAAAACTTATTATTCTAA
AATTAATGTAACCTTTAGAATAGATAAAGAAATTTTAGGTGGTTTTATTA
TTAAAGTTGATTCTAAGATAATTGATTTAAGTTTACGTGGTGAACTAGAA
GGTTTAGCTCGAAAAATGGAGATAAACTTATTAGAATCATAG
back to top