mRNA_L-digitata_M_contig101826.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101826.1.1
Unique NamemRNA_L-digitata_M_contig101826.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig101826.1.1 vs. uniprot
Match: A0A2D7FLT9_9PROT (LysR family transcriptional regulator n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D7FLT9_9PROT)

HSP 1 Score: 403 bits (1036), Expect = 4.830e-139
Identity = 209/265 (78.87%), Postives = 233/265 (87.92%), Query Frame = 1
Query:    1 MRHLRVLEFVDEVARTGSIRRAAERLNFTASALTRRIQELEAELGVVLFERTSRGMRLTTAGDMFLSHSREQLAEAERLKSALEDLQGLRRGNVRVACSQAVAPDFMPRAIGTFRRAYPRVDFDVRVVDHEQAAMALESYDVDVALVVSPDTSPGFERMARLEQRLVALMPRGHPLSEKSQIRLRECAAYPLALPDRSTGGRQLLDAFSARTGVSFELAIESNSFEFLRQSVVQSGLVTFQIDAGAPAEDADPDILVRKIDRRDA 795
            MRHLR+L  VD VARTGS+R AAE+LNFTASALTRRIQ+LEAELGVVLFERTSRGMR TTAG MFLSH+REQLAEAERLKS LEDLQGLRRG VR+ACSQAVA DFMP+AIGTFRR YP VDF+VRVVDHEQAAMAL SYDVD+ LV SP   P F+ +A LEQ LVAL+PR H LS  + +RL +CAA+P+ALPDRSTGGRQLLDAFSA+TG SFE+A+ESNSFEFLRQSVVQSGLV+FQID GAP +  DPDI++RKIDRRDA
Sbjct:   30 MRHLRILTLVDAVARTGSVRGAAEQLNFTASALTRRIQDLEAELGVVLFERTSRGMRPTTAGHMFLSHAREQLAEAERLKSGLEDLQGLRRGKVRIACSQAVAADFMPKAIGTFRREYPLVDFEVRVVDHEQAAMALASYDVDIGLVFSPGALPDFQCLALLEQHLVALLPRDHMLSRNTTLRLHDCAAHPVALPDRSTGGRQLLDAFSAQTGFSFEVAVESNSFEFLRQSVVQSGLVSFQIDVGAPRDAKDPDIVIRKIDRRDA 294          
BLAST of mRNA_L-digitata_M_contig101826.1.1 vs. uniprot
Match: A0A537TA29_9PROT (LysR family transcriptional regulator n=2 Tax=root TaxID=1 RepID=A0A537TA29_9PROT)

HSP 1 Score: 294 bits (752), Expect = 1.750e-96
Identity = 152/264 (57.58%), Postives = 196/264 (74.24%), Query Frame = 1
Query:    1 MRHLRVLEFVDEVARTGSIRRAAERLNFTASALTRRIQELEAELGVVLFERTSRGMRLTTAGDMFLSHSREQLAEAERLKSALEDLQGLRRGNVRVACSQAVAPDFMPRAIGTFRRAYPRVDFDVRVVDHEQAAMALESYDVDVALVVSPDTSPGFERMARLEQRLVALMPRGHPLSEKSQIRLRECAAYPLALPDRSTGGRQLLDAFSARTGVSFELAIESNSFEFLRQSVVQSGLVTFQIDAGAPAEDADPDILVRKIDRRD 792
            MRHLR+L++VDEVAR GSIR+AAERLN TASA+ RRI +LE EL   LFER  RG+RLT AG+MFL + R Q A+ ER++S +EDL+GLRRG VR+ACSQA+APDF+P  I  +R  YP+V F+V V+DHE+A  AL +YDVD+ +V  P     F+ + +LEQRLVALM   HPL+ +  +RLR+CAA+P+ALP+RS GGRQLLD  + R+G+ F +  ESNSFEFLR  V++ G ++FQI  GA A D    I+ R ID RD
Sbjct:    1 MRHLRLLQYVDEVARAGSIRKAAERLNVTASAVNRRIMDLEKELDAELFERRPRGVRLTAAGEMFLRYVRAQSADVERMRSQIEDLKGLRRGVVRIACSQALAPDFLPDEIAKYRVRYPQVAFEVAVLDHERAMRALAAYDVDLVIVFRPPYLANFQPLMKLEQRLVALMTPTHPLASRRAVRLRDCAAHPVALPERSIGGRQLLDEVTVRSGLHFNVVAESNSFEFLRGVVLRGGAISFQIQIGAVAGDRQTGIVTRSIDDRD 264          
BLAST of mRNA_L-digitata_M_contig101826.1.1 vs. uniprot
Match: A0A0Q7TML0_9HYPH (HTH lysR-type domain-containing protein n=1 Tax=Pseudolabrys sp. Root1462 TaxID=1736466 RepID=A0A0Q7TML0_9HYPH)

HSP 1 Score: 292 bits (747), Expect = 1.070e-95
Identity = 146/264 (55.30%), Postives = 203/264 (76.89%), Query Frame = 1
Query:    1 MRHLRVLEFVDEVARTGSIRRAAERLNFTASALTRRIQELEAELGVVLFERTSRGMRLTTAGDMFLSHSREQLAEAERLKSALEDLQGLRRGNVRVACSQAVAPDFMPRAIGTFRRAYPRVDFDVRVVDHEQAAMALESYDVDVALVVSPDTSPGFERMARLEQRLVALMPRGHPLSEKSQIRLRECAAYPLALPDRSTGGRQLLDAFSARTGVSFELAIESNSFEFLRQSVVQSGLVTFQIDAGAPAEDADPDILVRKIDRRD 792
            M+HLR+L++VDEVAR+ SIR+AAE+LN TASA+ RRI +LE ELG  LFER  RG+RLT AG++F+++ R+Q  E ER+KS +EDL+GLRRG VR+ACSQA+A DF+PRAI  FR+ +P+V+FD++VVDHE A  AL +++VD+ LV  P     F+ +  +EQ LVA+M + HPL++K ++RLR+CA YP+ALP+RS GGRQLL+   AR+G++F +A+ESNSFE LR  V+ +GL++FQI  G   E     ++ R+ID RD
Sbjct:    1 MKHLRILDYVDEVARSRSIRKAAEQLNVTASAVNRRIADLEEELGATLFERQPRGVRLTAAGEVFVNYLRKQGGEVERMKSQIEDLKGLRRGTVRLACSQALALDFLPRAIADFRKTHPKVEFDIKVVDHEYAMTALSAFEVDLVLVFRPPYLANFQPLMIVEQSLVAVMAKSHPLAKKPKVRLRDCANYPVALPERSIGGRQLLEDVVARSGLAFNIAVESNSFEMLRGMVIHAGLISFQIGIGTMPEGNKLGLVTREIDGRD 264          
BLAST of mRNA_L-digitata_M_contig101826.1.1 vs. uniprot
Match: A0A6L5FFQ2_9HYPH (LysR family transcriptional regulator n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FFQ2_9HYPH)

HSP 1 Score: 291 bits (746), Expect = 2.480e-95
Identity = 151/264 (57.20%), Postives = 193/264 (73.11%), Query Frame = 1
Query:    1 MRHLRVLEFVDEVARTGSIRRAAERLNFTASALTRRIQELEAELGVVLFERTSRGMRLTTAGDMFLSHSREQLAEAERLKSALEDLQGLRRGNVRVACSQAVAPDFMPRAIGTFRRAYPRVDFDVRVVDHEQAAMALESYDVDVALVVSPDTSPGFERMARLEQRLVALMPRGHPLSEKSQIRLRECAAYPLALPDRSTGGRQLLDAFSARTGVSFELAIESNSFEFLRQSVVQSGLVTFQIDAGAPAEDADPDILVRKIDRRD 792
            M+HLR+L +VDEVAR GSIR+AA+ LN TASA+ RRI +LE ELG  LFER  RG+RLT+AG++F+ + REQ    ER+KS +EDL+GLRRG VR+ACSQA+A +F+PR I  FRR YP V F+V+V DHEQA +AL +YDVD+ LV  P     F+ +  LEQRLVA+M   HPLS +  +RLR+CAAYP+AL +RS GGRQLL+    RTGVSF++A ESNSFE LR  V  +GL++FQI  G  +      ++ R ID RD
Sbjct:    1 MKHLRILRYVDEVARAGSIRKAADHLNVTASAVNRRIMDLEDELGAALFERRPRGVRLTSAGELFVHYLREQEGNVERMKSQVEDLKGLRRGTVRIACSQALALEFLPREIADFRRRYPNVSFEVKVFDHEQAMVALAAYDVDLVLVFRPPYLASFQPLMTLEQRLVAVMRSDHPLSRRRHLRLRDCAAYPVALAERSIGGRQLLEEIITRTGVSFQIAAESNSFEMLRGLVTYAGLISFQIRIGTLSRGRKYGLVARDIDDRD 264          
BLAST of mRNA_L-digitata_M_contig101826.1.1 vs. uniprot
Match: A0A345ZWU1_9HYPH (LysR family transcriptional regulator n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A345ZWU1_9HYPH)

HSP 1 Score: 290 bits (742), Expect = 6.560e-95
Identity = 148/264 (56.06%), Postives = 193/264 (73.11%), Query Frame = 1
Query:    1 MRHLRVLEFVDEVARTGSIRRAAERLNFTASALTRRIQELEAELGVVLFERTSRGMRLTTAGDMFLSHSREQLAEAERLKSALEDLQGLRRGNVRVACSQAVAPDFMPRAIGTFRRAYPRVDFDVRVVDHEQAAMALESYDVDVALVVSPDTSPGFERMARLEQRLVALMPRGHPLSEKSQIRLRECAAYPLALPDRSTGGRQLLDAFSARTGVSFELAIESNSFEFLRQSVVQSGLVTFQIDAGAPAEDADPDILVRKIDRRD 792
            M+HLR+  +VDEVAR GSIR+AAE+LN T+SA+ RRI +LE ELG  +FER +RG+RLT AG++F++  RE   + ER+KS +EDL+GLRRG VR ACSQA+A DF+PR +  FR+ Y  V FDV+V+DHE+A  AL +YDVD+ LV  P      + +  LEQRLVA+M   HPL+EK  +RLR+C  YP+ALP+R  GGRQLLD F AR+G+ F++A ESNSFEFLR  +    L+TFQI  GAPAE+    ++ R ID RD
Sbjct:    1 MKHLRIFHYVDEVARCGSIRKAAEQLNVTSSAVNRRILDLEEELGEPIFERRARGVRLTAAGEVFINFVREHEGDVERMKSQIEDLKGLRRGTVRFACSQALAHDFLPREVAAFRKQYASVSFDVKVLDHERAVAALAAYDVDLLLVFRPPYLANLQPLMTLEQRLVAIMHERHPLAEKKTLRLRDCLRYPVALPERGFGGRQLLDEFCARSGLRFQIAAESNSFEFLRSLIGHGDLITFQIQIGAPAENDKFGMVTRDIDDRD 264          
BLAST of mRNA_L-digitata_M_contig101826.1.1 vs. uniprot
Match: A0A140GVK2_9HYPH (LysR family transcriptional regulator n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A140GVK2_9HYPH)

HSP 1 Score: 286 bits (732), Expect = 2.290e-93
Identity = 148/264 (56.06%), Postives = 197/264 (74.62%), Query Frame = 1
Query:    1 MRHLRVLEFVDEVARTGSIRRAAERLNFTASALTRRIQELEAELGVVLFERTSRGMRLTTAGDMFLSHSREQLAEAERLKSALEDLQGLRRGNVRVACSQAVAPDFMPRAIGTFRRAYPRVDFDVRVVDHEQAAMALESYDVDVALVVSPDTSPGFERMARLEQRLVALMPRGHPLSEKSQIRLRECAAYPLALPDRSTGGRQLLDAFSARTGVSFELAIESNSFEFLRQSVVQSGLVTFQIDAGAPAEDADPDILVRKIDRRD 792
            M+HLR+L +VDEVAR+GSIR+AA++LN TASA+ RRI +LE ELG  LFER  RG+RLT AG++F+++ R+Q +E ER+KS + DL+G+RRG VR+ACSQA+A +F+PR IG FR+ +  V FDV+V DHEQA  AL +Y+VD+ALV  P     F  +  LEQR+VA+M   HPLS K  +RLR+CAAYP+ALP+RS GGRQLL+   AR+ +SF++A ESNSFE LR  V+Q+ L++FQI AG         ++ R ID RD
Sbjct:    1 MKHLRILNYVDEVARSGSIRKAADQLNVTASAVNRRIMDLEEELGAPLFERRPRGVRLTAAGEVFVNYLRQQDSEVERMKSQISDLKGMRRGTVRIACSQALALEFLPRQIGEFRKRHAFVSFDVKVFDHEQAMAALAAYEVDLALVFRPPFLANFHPLMALEQRVVAVMAADHPLSAKRTVRLRDCAAYPVALPERSIGGRQLLEEVMARSRISFQVAAESNSFELLRGLVLQANLISFQIRAGTMQSGNKLGLVARDIDDRD 264          
BLAST of mRNA_L-digitata_M_contig101826.1.1 vs. uniprot
Match: A0A327L481_9HYPH (HTH lysR-type domain-containing protein n=1 Tax=Rhodoplanes roseus TaxID=29409 RepID=A0A327L481_9HYPH)

HSP 1 Score: 285 bits (730), Expect = 5.600e-93
Identity = 147/266 (55.26%), Postives = 195/266 (73.31%), Query Frame = 1
Query:    1 MRHLRVLEFVDEVARTGSIRRAAERLNFTASALTRRIQELEAELGVVLFERTSRGMRLTTAGDMFLSHSREQLAEAERLKSALEDLQGLRRGNVRVACSQAVAPDFMPRAIGTFRRAYPRVDFDVRVVDHEQAAMALESYDVDVALVVSPDTSPGFERMARLEQRLVALMPRGHPLSEKSQIRLRECAAYPLALPDRSTGGRQLLDAFSARTGVSFELAIESNSFEFLRQSVVQSGLVTFQIDAGAPAE-DADPDILVRKIDRRDA 795
            MRHLR+L +VDEVARTGSIR+AAERL  TASA+ RRI +LE ELG  LFER  RG+RLT AG++F+ + REQ  + ER+KS +EDL+G++RG VR+ACSQA+A DF+P+ I  FR+ +P V F+VRV DH++A   LE+Y VD+  V  P    GF  +  +EQRLVALMP  HPL+ K+ +RLR+CAA+P+AL DR+ GGRQL+DA  AR G++  +  ESNSFE LR  V +  +++FQI+ GA    DA P ++ R +D RDA
Sbjct:    1 MRHLRILRYVDEVARTGSIRKAAERLAVTASAVNRRIMDLEEELGAALFERKPRGVRLTAAGEVFVRYLREQAGDVERMKSQIEDLRGMKRGTVRIACSQALAYDFLPQQIAAFRQRHPNVVFEVRVADHDRAMAELENYAVDLVAVYRPSFHAGFRPLMSVEQRLVALMPEDHPLAAKTVLRLRDCAAHPVALADRTLGGRQLVDAACARLGITLRIVAESNSFEMLRGLVRRDRVLSFQIEIGADVSPDATPGVVTRPLDPRDA 266          
BLAST of mRNA_L-digitata_M_contig101826.1.1 vs. uniprot
Match: A0A371B3F5_9HYPH (LysR family transcriptional regulator n=3 Tax=unclassified Pseudolabrys TaxID=2638514 RepID=A0A371B3F5_9HYPH)

HSP 1 Score: 285 bits (729), Expect = 5.740e-93
Identity = 146/264 (55.30%), Postives = 199/264 (75.38%), Query Frame = 1
Query:    1 MRHLRVLEFVDEVARTGSIRRAAERLNFTASALTRRIQELEAELGVVLFERTSRGMRLTTAGDMFLSHSREQLAEAERLKSALEDLQGLRRGNVRVACSQAVAPDFMPRAIGTFRRAYPRVDFDVRVVDHEQAAMALESYDVDVALVVSPDTSPGFERMARLEQRLVALMPRGHPLSEKSQIRLRECAAYPLALPDRSTGGRQLLDAFSARTGVSFELAIESNSFEFLRQSVVQSGLVTFQIDAGAPAEDADPDILVRKIDRRD 792
            M+HLR+L++VDEVAR  SIR+AAE LN TASA+ RRI +LE ELG +LFER  RG+RLT AG++F+++ R+Q  EAER+KS +EDL+GLRRG VR+ACSQA+A DF+PRAI  FR+ + +V+FDV+VVDHE A  AL +++VD+ LV  P     F+ +  LEQ L+A+M R HPL++ +++RLR+CA YP+AL +RS GGRQLL+   ARTG+ F +A ESNSFE LR  V+ + LV+FQI  GA  +     ++ ++ID RD
Sbjct:    1 MKHLRILDYVDEVARARSIRKAAEHLNVTASAVNRRIADLEEELGAILFERQPRGVRLTAAGEVFVNYLRKQGGEAERMKSQIEDLKGLRRGTVRIACSQALALDFLPRAIADFRKVHSKVEFDVKVVDHEYAMAALSAFEVDLVLVFRPPFLANFQPLMTLEQNLIAVMTRTHPLAKMAKVRLRDCANYPVALAERSIGGRQLLEEAMARTGLKFNVAAESNSFELLRGLVLHANLVSFQIAIGAMPQGNKLGLVAKEIDGRD 264          
BLAST of mRNA_L-digitata_M_contig101826.1.1 vs. uniprot
Match: UPI0017E61C60 (LysR family transcriptional regulator n=1 Tax=Rhodoplanes sp. TaxID=1968906 RepID=UPI0017E61C60)

HSP 1 Score: 281 bits (720), Expect = 1.280e-91
Identity = 147/265 (55.47%), Postives = 191/265 (72.08%), Query Frame = 1
Query:    1 MRHLRVLEFVDEVARTGSIRRAAERLNFTASALTRRIQELEAELGVVLFERTSRGMRLTTAGDMFLSHSREQLAEAERLKSALEDLQGLRRGNVRVACSQAVAPDFMPRAIGTFRRAYPRVDFDVRVVDHEQAAMALESYDVDVALVVSPDTSPGFERMARLEQRLVALMPRGHPLSEKSQIRLRECAAYPLALPDRSTGGRQLLDAFSARTGVSFELAIESNSFEFLRQSVVQSGLVTFQIDAGAPAE-DADPDILVRKIDRRD 792
            MRHL++L +VDEVARTGSIR+AAERL  TASA+ RRI +LE ELG  LFER  RG+RLT AG++F+ + REQ  + ER+KS +EDL+GL+RG VR+ACSQA+A DF+PR I  FR  YP V F+VRV DH++A   LE++ VD+  V  P     F  +  +EQRLVALMP  HPL+ K  +RLR+CA +P+AL DR+ GGRQL+DA  ARTGV+  +  ESNSFE LR  V +  +++FQI+ GA    DA P ++ R +D RD
Sbjct:    1 MRHLKILRYVDEVARTGSIRKAAERLAVTASAVNRRIMDLEEELGADLFERKPRGVRLTAAGEVFVRYLREQAGDVERMKSQIEDLRGLKRGTVRIACSQALAYDFLPREIAAFRARYPYVTFEVRVADHDRAMAELEAFAVDLVAVYRPSFHASFRPLMTVEQRLVALMPDDHPLAAKKTLRLRDCADHPVALADRTLGGRQLVDAACARTGVTLRIVAESNSFEMLRGLVRRDRVISFQIEIGADVSPDATPGVVARPLDPRD 265          
BLAST of mRNA_L-digitata_M_contig101826.1.1 vs. uniprot
Match: A0A4R3M1L3_9HYPH (DNA-binding transcriptional LysR family regulator n=1 Tax=Aquabacter spiritensis TaxID=933073 RepID=A0A4R3M1L3_9HYPH)

HSP 1 Score: 281 bits (720), Expect = 1.560e-91
Identity = 146/264 (55.30%), Postives = 191/264 (72.35%), Query Frame = 1
Query:    1 MRHLRVLEFVDEVARTGSIRRAAERLNFTASALTRRIQELEAELGVVLFERTSRGMRLTTAGDMFLSHSREQLAEAERLKSALEDLQGLRRGNVRVACSQAVAPDFMPRAIGTFRRAYPRVDFDVRVVDHEQAAMALESYDVDVALVVSPDTSPGFERMARLEQRLVALMPRGHPLSEKSQIRLRECAAYPLALPDRSTGGRQLLDAFSARTGVSFELAIESNSFEFLRQSVVQSGLVTFQIDAGAPAEDADPDILVRKIDRRD 792
            MRHLR L ++DEVARTGSIRRAA RLN T SAL RRI +LE ELG+ L ER +RG+ LT AG++F+S+ REQL +AER++S LEDL+GLRRG VR+ACSQA+A DF+P+    FR+ YP ++F+V V DHE A   L +Y+VD+ LV  P    G   +  L QR+VALMP  HPL+ K+++RL +C  YPLALP+RSTGGRQ+++   +R+G+ F +A +SNSFE LR  V   G+++FQI  GA  E     I+VR ID RD
Sbjct:    1 MRHLRFLRYMDEVARTGSIRRAAGRLNVTPSALNRRIMDLEEELGLKLLERRARGVDLTAAGEVFVSYIREQLNDAERMRSQLEDLRGLRRGTVRIACSQALAHDFLPQEAAAFRKRYPLMNFEVMVADHEHAVALLIAYEVDLILVFRPPFVAGMRPLMTLPQRVVALMPADHPLAAKAKVRLADCTGYPLALPERSTGGRQMIEEQISRSGLRFSVAAQSNSFELLRGLVAHCGMISFQIQIGALPEAMPAGIVVRPIDERD 264          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101826.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D7FLT9_9PROT4.830e-13978.87LysR family transcriptional regulator n=1 Tax=Rhod... [more]
A0A537TA29_9PROT1.750e-9657.58LysR family transcriptional regulator n=2 Tax=root... [more]
A0A0Q7TML0_9HYPH1.070e-9555.30HTH lysR-type domain-containing protein n=1 Tax=Ps... [more]
A0A6L5FFQ2_9HYPH2.480e-9557.20LysR family transcriptional regulator n=1 Tax=Hyph... [more]
A0A345ZWU1_9HYPH6.560e-9556.06LysR family transcriptional regulator n=1 Tax=Pseu... [more]
A0A140GVK2_9HYPH2.290e-9356.06LysR family transcriptional regulator n=1 Tax=Rhod... [more]
A0A327L481_9HYPH5.600e-9355.26HTH lysR-type domain-containing protein n=1 Tax=Rh... [more]
A0A371B3F5_9HYPH5.740e-9355.30LysR family transcriptional regulator n=3 Tax=uncl... [more]
UPI0017E61C601.280e-9155.47LysR family transcriptional regulator n=1 Tax=Rhod... [more]
A0A4R3M1L3_9HYPH1.560e-9155.30DNA-binding transcriptional LysR family regulator ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101826contigL-digitata_M_contig101826:1..795 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1131814.JAFO01000001_gene4322
PFAMsHTH_1,LysR_substrate
Model size795
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.34e-90
EggNOG OGsCOG0583@1|root,COG0583@2|Bacteria,1MW4Y@1224|Proteobacteria,2TVHV@28211|Alphaproteobacteria,3EZDZ@335928|Xanthobacteraceae
DescriptionLysR substrate binding domain
Cds size795
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406623.2487173-CDS-L-digitata_M_contig101826:0..7951682406623.2487173-CDS-L-digitata_M_contig101826:0..795Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101826 1..795 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101826.1.1prot_L-digitata_M_contig101826.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101826 1..795 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101826.1.1

>prot_L-digitata_M_contig101826.1.1 ID=prot_L-digitata_M_contig101826.1.1|Name=mRNA_L-digitata_M_contig101826.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=265bp
MRHLRVLEFVDEVARTGSIRRAAERLNFTASALTRRIQELEAELGVVLFE
RTSRGMRLTTAGDMFLSHSREQLAEAERLKSALEDLQGLRRGNVRVACSQ
AVAPDFMPRAIGTFRRAYPRVDFDVRVVDHEQAAMALESYDVDVALVVSP
DTSPGFERMARLEQRLVALMPRGHPLSEKSQIRLRECAAYPLALPDRSTG
GRQLLDAFSARTGVSFELAIESNSFEFLRQSVVQSGLVTFQIDAGAPAED
ADPDILVRKIDRRDA
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mRNA from alignment at L-digitata_M_contig101826:1..795-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101826.1.1 ID=mRNA_L-digitata_M_contig101826.1.1|Name=mRNA_L-digitata_M_contig101826.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=795bp|location=Sequence derived from alignment at L-digitata_M_contig101826:1..795- (Laminaria digitata LdigPH10_18mv male)
ATGCGTCATTTGCGGGTCCTTGAATTCGTTGACGAGGTAGCGCGGACAGG ATCGATACGGCGCGCCGCGGAGCGGCTGAATTTTACGGCATCTGCGCTGA CCCGGCGGATCCAGGAACTTGAAGCCGAATTGGGGGTTGTGTTATTCGAA CGAACTTCGCGGGGTATGCGACTGACCACGGCGGGGGACATGTTTCTGTC GCACTCCCGCGAGCAGCTTGCGGAGGCCGAACGGCTGAAATCGGCGCTCG AAGATCTGCAGGGGCTGCGGCGTGGCAATGTGAGGGTTGCCTGCAGTCAG GCTGTCGCACCCGACTTCATGCCGAGGGCGATCGGTACATTTCGCCGGGC GTATCCCCGGGTCGACTTCGACGTCCGGGTTGTCGATCATGAGCAGGCCG CGATGGCGCTTGAATCGTATGACGTGGATGTTGCTCTCGTCGTTAGCCCG GATACATCGCCGGGCTTTGAGCGTATGGCCCGGCTTGAACAGCGGCTGGT CGCGTTGATGCCGCGCGGTCATCCGCTGTCCGAGAAATCGCAGATTCGGT TGCGTGAGTGCGCGGCTTACCCGTTGGCCCTGCCGGATCGTTCTACCGGC GGGCGGCAATTGCTGGATGCGTTTTCCGCCCGGACGGGGGTTTCCTTCGA GCTTGCGATTGAATCGAATTCGTTCGAATTTTTGCGTCAGTCCGTGGTCC AGTCGGGTCTTGTCACCTTCCAGATCGACGCCGGTGCGCCGGCGGAGGAC GCCGACCCGGATATACTGGTCCGAAAAATCGACCGGCGTGACGCG
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Coding sequence (CDS) from alignment at L-digitata_M_contig101826:1..795-

>mRNA_L-digitata_M_contig101826.1.1 ID=mRNA_L-digitata_M_contig101826.1.1|Name=mRNA_L-digitata_M_contig101826.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=795bp|location=Sequence derived from alignment at L-digitata_M_contig101826:1..795- (Laminaria digitata LdigPH10_18mv male)
ATGCGTCATTTGCGGGTCCTTGAATTCGTTGACGAGGTAGCGCGGACAGG
ATCGATACGGCGCGCCGCGGAGCGGCTGAATTTTACGGCATCTGCGCTGA
CCCGGCGGATCCAGGAACTTGAAGCCGAATTGGGGGTTGTGTTATTCGAA
CGAACTTCGCGGGGTATGCGACTGACCACGGCGGGGGACATGTTTCTGTC
GCACTCCCGCGAGCAGCTTGCGGAGGCCGAACGGCTGAAATCGGCGCTCG
AAGATCTGCAGGGGCTGCGGCGTGGCAATGTGAGGGTTGCCTGCAGTCAG
GCTGTCGCACCCGACTTCATGCCGAGGGCGATCGGTACATTTCGCCGGGC
GTATCCCCGGGTCGACTTCGACGTCCGGGTTGTCGATCATGAGCAGGCCG
CGATGGCGCTTGAATCGTATGACGTGGATGTTGCTCTCGTCGTTAGCCCG
GATACATCGCCGGGCTTTGAGCGTATGGCCCGGCTTGAACAGCGGCTGGT
CGCGTTGATGCCGCGCGGTCATCCGCTGTCCGAGAAATCGCAGATTCGGT
TGCGTGAGTGCGCGGCTTACCCGTTGGCCCTGCCGGATCGTTCTACCGGC
GGGCGGCAATTGCTGGATGCGTTTTCCGCCCGGACGGGGGTTTCCTTCGA
GCTTGCGATTGAATCGAATTCGTTCGAATTTTTGCGTCAGTCCGTGGTCC
AGTCGGGTCTTGTCACCTTCCAGATCGACGCCGGTGCGCCGGCGGAGGAC
GCCGACCCGGATATACTGGTCCGAAAAATCGACCGGCGTGACGCG
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