mRNA_L-digitata_M_contig101826.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
|
Overview
Homology
BLAST of mRNA_L-digitata_M_contig101826.1.1 vs. uniprot
Match: A0A2D7FLT9_9PROT (LysR family transcriptional regulator n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D7FLT9_9PROT) HSP 1 Score: 403 bits (1036), Expect = 4.830e-139 Identity = 209/265 (78.87%), Postives = 233/265 (87.92%), Query Frame = 1
Query: 1 MRHLRVLEFVDEVARTGSIRRAAERLNFTASALTRRIQELEAELGVVLFERTSRGMRLTTAGDMFLSHSREQLAEAERLKSALEDLQGLRRGNVRVACSQAVAPDFMPRAIGTFRRAYPRVDFDVRVVDHEQAAMALESYDVDVALVVSPDTSPGFERMARLEQRLVALMPRGHPLSEKSQIRLRECAAYPLALPDRSTGGRQLLDAFSARTGVSFELAIESNSFEFLRQSVVQSGLVTFQIDAGAPAEDADPDILVRKIDRRDA 795
MRHLR+L VD VARTGS+R AAE+LNFTASALTRRIQ+LEAELGVVLFERTSRGMR TTAG MFLSH+REQLAEAERLKS LEDLQGLRRG VR+ACSQAVA DFMP+AIGTFRR YP VDF+VRVVDHEQAAMAL SYDVD+ LV SP P F+ +A LEQ LVAL+PR H LS + +RL +CAA+P+ALPDRSTGGRQLLDAFSA+TG SFE+A+ESNSFEFLRQSVVQSGLV+FQID GAP + DPDI++RKIDRRDA
Sbjct: 30 MRHLRILTLVDAVARTGSVRGAAEQLNFTASALTRRIQDLEAELGVVLFERTSRGMRPTTAGHMFLSHAREQLAEAERLKSGLEDLQGLRRGKVRIACSQAVAADFMPKAIGTFRREYPLVDFEVRVVDHEQAAMALASYDVDIGLVFSPGALPDFQCLALLEQHLVALLPRDHMLSRNTTLRLHDCAAHPVALPDRSTGGRQLLDAFSAQTGFSFEVAVESNSFEFLRQSVVQSGLVSFQIDVGAPRDAKDPDIVIRKIDRRDA 294
BLAST of mRNA_L-digitata_M_contig101826.1.1 vs. uniprot
Match: A0A537TA29_9PROT (LysR family transcriptional regulator n=2 Tax=root TaxID=1 RepID=A0A537TA29_9PROT) HSP 1 Score: 294 bits (752), Expect = 1.750e-96 Identity = 152/264 (57.58%), Postives = 196/264 (74.24%), Query Frame = 1
Query: 1 MRHLRVLEFVDEVARTGSIRRAAERLNFTASALTRRIQELEAELGVVLFERTSRGMRLTTAGDMFLSHSREQLAEAERLKSALEDLQGLRRGNVRVACSQAVAPDFMPRAIGTFRRAYPRVDFDVRVVDHEQAAMALESYDVDVALVVSPDTSPGFERMARLEQRLVALMPRGHPLSEKSQIRLRECAAYPLALPDRSTGGRQLLDAFSARTGVSFELAIESNSFEFLRQSVVQSGLVTFQIDAGAPAEDADPDILVRKIDRRD 792
MRHLR+L++VDEVAR GSIR+AAERLN TASA+ RRI +LE EL LFER RG+RLT AG+MFL + R Q A+ ER++S +EDL+GLRRG VR+ACSQA+APDF+P I +R YP+V F+V V+DHE+A AL +YDVD+ +V P F+ + +LEQRLVALM HPL+ + +RLR+CAA+P+ALP+RS GGRQLLD + R+G+ F + ESNSFEFLR V++ G ++FQI GA A D I+ R ID RD
Sbjct: 1 MRHLRLLQYVDEVARAGSIRKAAERLNVTASAVNRRIMDLEKELDAELFERRPRGVRLTAAGEMFLRYVRAQSADVERMRSQIEDLKGLRRGVVRIACSQALAPDFLPDEIAKYRVRYPQVAFEVAVLDHERAMRALAAYDVDLVIVFRPPYLANFQPLMKLEQRLVALMTPTHPLASRRAVRLRDCAAHPVALPERSIGGRQLLDEVTVRSGLHFNVVAESNSFEFLRGVVLRGGAISFQIQIGAVAGDRQTGIVTRSIDDRD 264
BLAST of mRNA_L-digitata_M_contig101826.1.1 vs. uniprot
Match: A0A0Q7TML0_9HYPH (HTH lysR-type domain-containing protein n=1 Tax=Pseudolabrys sp. Root1462 TaxID=1736466 RepID=A0A0Q7TML0_9HYPH) HSP 1 Score: 292 bits (747), Expect = 1.070e-95 Identity = 146/264 (55.30%), Postives = 203/264 (76.89%), Query Frame = 1
Query: 1 MRHLRVLEFVDEVARTGSIRRAAERLNFTASALTRRIQELEAELGVVLFERTSRGMRLTTAGDMFLSHSREQLAEAERLKSALEDLQGLRRGNVRVACSQAVAPDFMPRAIGTFRRAYPRVDFDVRVVDHEQAAMALESYDVDVALVVSPDTSPGFERMARLEQRLVALMPRGHPLSEKSQIRLRECAAYPLALPDRSTGGRQLLDAFSARTGVSFELAIESNSFEFLRQSVVQSGLVTFQIDAGAPAEDADPDILVRKIDRRD 792
M+HLR+L++VDEVAR+ SIR+AAE+LN TASA+ RRI +LE ELG LFER RG+RLT AG++F+++ R+Q E ER+KS +EDL+GLRRG VR+ACSQA+A DF+PRAI FR+ +P+V+FD++VVDHE A AL +++VD+ LV P F+ + +EQ LVA+M + HPL++K ++RLR+CA YP+ALP+RS GGRQLL+ AR+G++F +A+ESNSFE LR V+ +GL++FQI G E ++ R+ID RD
Sbjct: 1 MKHLRILDYVDEVARSRSIRKAAEQLNVTASAVNRRIADLEEELGATLFERQPRGVRLTAAGEVFVNYLRKQGGEVERMKSQIEDLKGLRRGTVRLACSQALALDFLPRAIADFRKTHPKVEFDIKVVDHEYAMTALSAFEVDLVLVFRPPYLANFQPLMIVEQSLVAVMAKSHPLAKKPKVRLRDCANYPVALPERSIGGRQLLEDVVARSGLAFNIAVESNSFEMLRGMVIHAGLISFQIGIGTMPEGNKLGLVTREIDGRD 264
BLAST of mRNA_L-digitata_M_contig101826.1.1 vs. uniprot
Match: A0A6L5FFQ2_9HYPH (LysR family transcriptional regulator n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FFQ2_9HYPH) HSP 1 Score: 291 bits (746), Expect = 2.480e-95 Identity = 151/264 (57.20%), Postives = 193/264 (73.11%), Query Frame = 1
Query: 1 MRHLRVLEFVDEVARTGSIRRAAERLNFTASALTRRIQELEAELGVVLFERTSRGMRLTTAGDMFLSHSREQLAEAERLKSALEDLQGLRRGNVRVACSQAVAPDFMPRAIGTFRRAYPRVDFDVRVVDHEQAAMALESYDVDVALVVSPDTSPGFERMARLEQRLVALMPRGHPLSEKSQIRLRECAAYPLALPDRSTGGRQLLDAFSARTGVSFELAIESNSFEFLRQSVVQSGLVTFQIDAGAPAEDADPDILVRKIDRRD 792
M+HLR+L +VDEVAR GSIR+AA+ LN TASA+ RRI +LE ELG LFER RG+RLT+AG++F+ + REQ ER+KS +EDL+GLRRG VR+ACSQA+A +F+PR I FRR YP V F+V+V DHEQA +AL +YDVD+ LV P F+ + LEQRLVA+M HPLS + +RLR+CAAYP+AL +RS GGRQLL+ RTGVSF++A ESNSFE LR V +GL++FQI G + ++ R ID RD
Sbjct: 1 MKHLRILRYVDEVARAGSIRKAADHLNVTASAVNRRIMDLEDELGAALFERRPRGVRLTSAGELFVHYLREQEGNVERMKSQVEDLKGLRRGTVRIACSQALALEFLPREIADFRRRYPNVSFEVKVFDHEQAMVALAAYDVDLVLVFRPPYLASFQPLMTLEQRLVAVMRSDHPLSRRRHLRLRDCAAYPVALAERSIGGRQLLEEIITRTGVSFQIAAESNSFEMLRGLVTYAGLISFQIRIGTLSRGRKYGLVARDIDDRD 264
BLAST of mRNA_L-digitata_M_contig101826.1.1 vs. uniprot
Match: A0A345ZWU1_9HYPH (LysR family transcriptional regulator n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A345ZWU1_9HYPH) HSP 1 Score: 290 bits (742), Expect = 6.560e-95 Identity = 148/264 (56.06%), Postives = 193/264 (73.11%), Query Frame = 1
Query: 1 MRHLRVLEFVDEVARTGSIRRAAERLNFTASALTRRIQELEAELGVVLFERTSRGMRLTTAGDMFLSHSREQLAEAERLKSALEDLQGLRRGNVRVACSQAVAPDFMPRAIGTFRRAYPRVDFDVRVVDHEQAAMALESYDVDVALVVSPDTSPGFERMARLEQRLVALMPRGHPLSEKSQIRLRECAAYPLALPDRSTGGRQLLDAFSARTGVSFELAIESNSFEFLRQSVVQSGLVTFQIDAGAPAEDADPDILVRKIDRRD 792
M+HLR+ +VDEVAR GSIR+AAE+LN T+SA+ RRI +LE ELG +FER +RG+RLT AG++F++ RE + ER+KS +EDL+GLRRG VR ACSQA+A DF+PR + FR+ Y V FDV+V+DHE+A AL +YDVD+ LV P + + LEQRLVA+M HPL+EK +RLR+C YP+ALP+R GGRQLLD F AR+G+ F++A ESNSFEFLR + L+TFQI GAPAE+ ++ R ID RD
Sbjct: 1 MKHLRIFHYVDEVARCGSIRKAAEQLNVTSSAVNRRILDLEEELGEPIFERRARGVRLTAAGEVFINFVREHEGDVERMKSQIEDLKGLRRGTVRFACSQALAHDFLPREVAAFRKQYASVSFDVKVLDHERAVAALAAYDVDLLLVFRPPYLANLQPLMTLEQRLVAIMHERHPLAEKKTLRLRDCLRYPVALPERGFGGRQLLDEFCARSGLRFQIAAESNSFEFLRSLIGHGDLITFQIQIGAPAENDKFGMVTRDIDDRD 264
BLAST of mRNA_L-digitata_M_contig101826.1.1 vs. uniprot
Match: A0A140GVK2_9HYPH (LysR family transcriptional regulator n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A140GVK2_9HYPH) HSP 1 Score: 286 bits (732), Expect = 2.290e-93 Identity = 148/264 (56.06%), Postives = 197/264 (74.62%), Query Frame = 1
Query: 1 MRHLRVLEFVDEVARTGSIRRAAERLNFTASALTRRIQELEAELGVVLFERTSRGMRLTTAGDMFLSHSREQLAEAERLKSALEDLQGLRRGNVRVACSQAVAPDFMPRAIGTFRRAYPRVDFDVRVVDHEQAAMALESYDVDVALVVSPDTSPGFERMARLEQRLVALMPRGHPLSEKSQIRLRECAAYPLALPDRSTGGRQLLDAFSARTGVSFELAIESNSFEFLRQSVVQSGLVTFQIDAGAPAEDADPDILVRKIDRRD 792
M+HLR+L +VDEVAR+GSIR+AA++LN TASA+ RRI +LE ELG LFER RG+RLT AG++F+++ R+Q +E ER+KS + DL+G+RRG VR+ACSQA+A +F+PR IG FR+ + V FDV+V DHEQA AL +Y+VD+ALV P F + LEQR+VA+M HPLS K +RLR+CAAYP+ALP+RS GGRQLL+ AR+ +SF++A ESNSFE LR V+Q+ L++FQI AG ++ R ID RD
Sbjct: 1 MKHLRILNYVDEVARSGSIRKAADQLNVTASAVNRRIMDLEEELGAPLFERRPRGVRLTAAGEVFVNYLRQQDSEVERMKSQISDLKGMRRGTVRIACSQALALEFLPRQIGEFRKRHAFVSFDVKVFDHEQAMAALAAYEVDLALVFRPPFLANFHPLMALEQRVVAVMAADHPLSAKRTVRLRDCAAYPVALPERSIGGRQLLEEVMARSRISFQVAAESNSFELLRGLVLQANLISFQIRAGTMQSGNKLGLVARDIDDRD 264
BLAST of mRNA_L-digitata_M_contig101826.1.1 vs. uniprot
Match: A0A327L481_9HYPH (HTH lysR-type domain-containing protein n=1 Tax=Rhodoplanes roseus TaxID=29409 RepID=A0A327L481_9HYPH) HSP 1 Score: 285 bits (730), Expect = 5.600e-93 Identity = 147/266 (55.26%), Postives = 195/266 (73.31%), Query Frame = 1
Query: 1 MRHLRVLEFVDEVARTGSIRRAAERLNFTASALTRRIQELEAELGVVLFERTSRGMRLTTAGDMFLSHSREQLAEAERLKSALEDLQGLRRGNVRVACSQAVAPDFMPRAIGTFRRAYPRVDFDVRVVDHEQAAMALESYDVDVALVVSPDTSPGFERMARLEQRLVALMPRGHPLSEKSQIRLRECAAYPLALPDRSTGGRQLLDAFSARTGVSFELAIESNSFEFLRQSVVQSGLVTFQIDAGAPAE-DADPDILVRKIDRRDA 795
MRHLR+L +VDEVARTGSIR+AAERL TASA+ RRI +LE ELG LFER RG+RLT AG++F+ + REQ + ER+KS +EDL+G++RG VR+ACSQA+A DF+P+ I FR+ +P V F+VRV DH++A LE+Y VD+ V P GF + +EQRLVALMP HPL+ K+ +RLR+CAA+P+AL DR+ GGRQL+DA AR G++ + ESNSFE LR V + +++FQI+ GA DA P ++ R +D RDA
Sbjct: 1 MRHLRILRYVDEVARTGSIRKAAERLAVTASAVNRRIMDLEEELGAALFERKPRGVRLTAAGEVFVRYLREQAGDVERMKSQIEDLRGMKRGTVRIACSQALAYDFLPQQIAAFRQRHPNVVFEVRVADHDRAMAELENYAVDLVAVYRPSFHAGFRPLMSVEQRLVALMPEDHPLAAKTVLRLRDCAAHPVALADRTLGGRQLVDAACARLGITLRIVAESNSFEMLRGLVRRDRVLSFQIEIGADVSPDATPGVVTRPLDPRDA 266
BLAST of mRNA_L-digitata_M_contig101826.1.1 vs. uniprot
Match: A0A371B3F5_9HYPH (LysR family transcriptional regulator n=3 Tax=unclassified Pseudolabrys TaxID=2638514 RepID=A0A371B3F5_9HYPH) HSP 1 Score: 285 bits (729), Expect = 5.740e-93 Identity = 146/264 (55.30%), Postives = 199/264 (75.38%), Query Frame = 1
Query: 1 MRHLRVLEFVDEVARTGSIRRAAERLNFTASALTRRIQELEAELGVVLFERTSRGMRLTTAGDMFLSHSREQLAEAERLKSALEDLQGLRRGNVRVACSQAVAPDFMPRAIGTFRRAYPRVDFDVRVVDHEQAAMALESYDVDVALVVSPDTSPGFERMARLEQRLVALMPRGHPLSEKSQIRLRECAAYPLALPDRSTGGRQLLDAFSARTGVSFELAIESNSFEFLRQSVVQSGLVTFQIDAGAPAEDADPDILVRKIDRRD 792
M+HLR+L++VDEVAR SIR+AAE LN TASA+ RRI +LE ELG +LFER RG+RLT AG++F+++ R+Q EAER+KS +EDL+GLRRG VR+ACSQA+A DF+PRAI FR+ + +V+FDV+VVDHE A AL +++VD+ LV P F+ + LEQ L+A+M R HPL++ +++RLR+CA YP+AL +RS GGRQLL+ ARTG+ F +A ESNSFE LR V+ + LV+FQI GA + ++ ++ID RD
Sbjct: 1 MKHLRILDYVDEVARARSIRKAAEHLNVTASAVNRRIADLEEELGAILFERQPRGVRLTAAGEVFVNYLRKQGGEAERMKSQIEDLKGLRRGTVRIACSQALALDFLPRAIADFRKVHSKVEFDVKVVDHEYAMAALSAFEVDLVLVFRPPFLANFQPLMTLEQNLIAVMTRTHPLAKMAKVRLRDCANYPVALAERSIGGRQLLEEAMARTGLKFNVAAESNSFELLRGLVLHANLVSFQIAIGAMPQGNKLGLVAKEIDGRD 264
BLAST of mRNA_L-digitata_M_contig101826.1.1 vs. uniprot
Match: UPI0017E61C60 (LysR family transcriptional regulator n=1 Tax=Rhodoplanes sp. TaxID=1968906 RepID=UPI0017E61C60) HSP 1 Score: 281 bits (720), Expect = 1.280e-91 Identity = 147/265 (55.47%), Postives = 191/265 (72.08%), Query Frame = 1
Query: 1 MRHLRVLEFVDEVARTGSIRRAAERLNFTASALTRRIQELEAELGVVLFERTSRGMRLTTAGDMFLSHSREQLAEAERLKSALEDLQGLRRGNVRVACSQAVAPDFMPRAIGTFRRAYPRVDFDVRVVDHEQAAMALESYDVDVALVVSPDTSPGFERMARLEQRLVALMPRGHPLSEKSQIRLRECAAYPLALPDRSTGGRQLLDAFSARTGVSFELAIESNSFEFLRQSVVQSGLVTFQIDAGAPAE-DADPDILVRKIDRRD 792
MRHL++L +VDEVARTGSIR+AAERL TASA+ RRI +LE ELG LFER RG+RLT AG++F+ + REQ + ER+KS +EDL+GL+RG VR+ACSQA+A DF+PR I FR YP V F+VRV DH++A LE++ VD+ V P F + +EQRLVALMP HPL+ K +RLR+CA +P+AL DR+ GGRQL+DA ARTGV+ + ESNSFE LR V + +++FQI+ GA DA P ++ R +D RD
Sbjct: 1 MRHLKILRYVDEVARTGSIRKAAERLAVTASAVNRRIMDLEEELGADLFERKPRGVRLTAAGEVFVRYLREQAGDVERMKSQIEDLRGLKRGTVRIACSQALAYDFLPREIAAFRARYPYVTFEVRVADHDRAMAELEAFAVDLVAVYRPSFHASFRPLMTVEQRLVALMPDDHPLAAKKTLRLRDCADHPVALADRTLGGRQLVDAACARTGVTLRIVAESNSFEMLRGLVRRDRVISFQIEIGADVSPDATPGVVARPLDPRD 265
BLAST of mRNA_L-digitata_M_contig101826.1.1 vs. uniprot
Match: A0A4R3M1L3_9HYPH (DNA-binding transcriptional LysR family regulator n=1 Tax=Aquabacter spiritensis TaxID=933073 RepID=A0A4R3M1L3_9HYPH) HSP 1 Score: 281 bits (720), Expect = 1.560e-91 Identity = 146/264 (55.30%), Postives = 191/264 (72.35%), Query Frame = 1
Query: 1 MRHLRVLEFVDEVARTGSIRRAAERLNFTASALTRRIQELEAELGVVLFERTSRGMRLTTAGDMFLSHSREQLAEAERLKSALEDLQGLRRGNVRVACSQAVAPDFMPRAIGTFRRAYPRVDFDVRVVDHEQAAMALESYDVDVALVVSPDTSPGFERMARLEQRLVALMPRGHPLSEKSQIRLRECAAYPLALPDRSTGGRQLLDAFSARTGVSFELAIESNSFEFLRQSVVQSGLVTFQIDAGAPAEDADPDILVRKIDRRD 792
MRHLR L ++DEVARTGSIRRAA RLN T SAL RRI +LE ELG+ L ER +RG+ LT AG++F+S+ REQL +AER++S LEDL+GLRRG VR+ACSQA+A DF+P+ FR+ YP ++F+V V DHE A L +Y+VD+ LV P G + L QR+VALMP HPL+ K+++RL +C YPLALP+RSTGGRQ+++ +R+G+ F +A +SNSFE LR V G+++FQI GA E I+VR ID RD
Sbjct: 1 MRHLRFLRYMDEVARTGSIRRAAGRLNVTPSALNRRIMDLEEELGLKLLERRARGVDLTAAGEVFVSYIREQLNDAERMRSQLEDLRGLRRGTVRIACSQALAHDFLPQEAAAFRKRYPLMNFEVMVADHEHAVALLIAYEVDLILVFRPPFVAGMRPLMTLPQRVVALMPADHPLAAKAKVRLADCTGYPLALPERSTGGRQMIEEQISRSGLRFSVAAQSNSFELLRGLVAHCGMISFQIQIGALPEAMPAGIVVRPIDERD 264 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101826.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig101826.1.1 >prot_L-digitata_M_contig101826.1.1 ID=prot_L-digitata_M_contig101826.1.1|Name=mRNA_L-digitata_M_contig101826.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=265bp MRHLRVLEFVDEVARTGSIRRAAERLNFTASALTRRIQELEAELGVVLFEback to top mRNA from alignment at L-digitata_M_contig101826:1..795- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig101826.1.1 ID=mRNA_L-digitata_M_contig101826.1.1|Name=mRNA_L-digitata_M_contig101826.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=795bp|location=Sequence derived from alignment at L-digitata_M_contig101826:1..795- (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig101826:1..795- >mRNA_L-digitata_M_contig101826.1.1 ID=mRNA_L-digitata_M_contig101826.1.1|Name=mRNA_L-digitata_M_contig101826.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=795bp|location=Sequence derived from alignment at L-digitata_M_contig101826:1..795- (Laminaria digitata LdigPH10_18mv male)back to top |