mRNA_L-digitata_M_contig101824.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-digitata_M_contig101824.2.1
Unique Name	mRNA_L-digitata_M_contig101824.2.1
Type	mRNA
Organism	Laminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))

Homology

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BLAST of mRNA_L-digitata_M_contig101824.2.1 vs. uniprot
Match: A0A059E591_9PROT (Glyco_trans_2-like domain-containing protein n=3 Tax=Hyphomonadaceae TaxID=69657 RepID=A0A059E591_9PROT)

HSP 1 Score: 178 bits (452), Expect = 4.270e-53
Identity = 84/92 (91.30%), Postives = 88/92 (95.65%), Query Frame = 2

Query:   62 RFEQAEMSLSSCFDMTDTPFQMVYIDGGSPRDIAHVLKTEVETRGHTYIRRDGFLTPNDARNTALPLINTEYIAFIDNDVVFQPGWLDALIQ 337
            RFEQAEMSL SCFD+TDTPF+MVYIDGG+PR+IA VLKTEVETRGHTYIRRDGFLTPNDARNTALP INTEYIAFIDNDVVFQP WLDALIQ
Sbjct:   22 RFEQAEMSLKSCFDVTDTPFEMVYIDGGTPREIACVLKTEVETRGHTYIRRDGFLTPNDARNTALPFINTEYIAFIDNDVVFQPAWLDALIQ 113

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BLAST of mRNA_L-digitata_M_contig101824.2.1 vs. uniprot
Match: A0A2E3AWD0_9PROT (Glyco_trans_2-like domain-containing protein n=1 Tax=Hyphomonadaceae bacterium TaxID=2026748 RepID=A0A2E3AWD0_9PROT)

HSP 1 Score: 164 bits (416), Expect = 7.960e-48
Identity = 75/92 (81.52%), Postives = 85/92 (92.39%), Query Frame = 2

Query:   62 RFEQAEMSLSSCFDMTDTPFQMVYIDGGSPRDIAHVLKTEVETRGHTYIRRDGFLTPNDARNTALPLINTEYIAFIDNDVVFQPGWLDALIQ 337
            RFEQAEMSL+SCF+ TDTPF+M+Y+DGGSPR+IA VLK EVE RGHTYIRRDG+LTPNDARN ALP + T+YIAFIDNDVVFQPGWLDALI+
Sbjct:   22 RFEQAEMSLASCFETTDTPFEMIYVDGGSPREIAAVLKHEVERRGHTYIRRDGYLTPNDARNMALPHVRTDYIAFIDNDVVFQPGWLDALIK 113

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BLAST of mRNA_L-digitata_M_contig101824.2.1 vs. uniprot
Match: A0A062UCI2_9PROT (Glyco_trans_2-like domain-containing protein n=1 Tax=Hyphomonas chukchiensis TaxID=1280947 RepID=A0A062UCI2_9PROT)

HSP 1 Score: 139 bits (350), Expect = 6.510e-38
Identity = 61/92 (66.30%), Postives = 75/92 (81.52%), Query Frame = 2

Query:   62 RFEQAEMSLSSCFDMTDTPFQMVYIDGGSPRDIAHVLKTEVETRGHTYIRRDGFLTPNDARNTALPLINTEYIAFIDNDVVFQPGWLDALIQ 337
            RFEQA MSL +CFD  D PF+M+Y+DGGSP+ IA  LK EVE R H YIRR G++TPNDARNTALPL++T+++ FIDNDV F PGWL AL++
Sbjct:   22 RFEQATMSLQACFDTADLPFRMIYVDGGSPKAIADELKDEVEKRNHIYIRRPGYITPNDARNTALPLVDTKHVVFIDNDVSFAPGWLSALVK 113

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BLAST of mRNA_L-digitata_M_contig101824.2.1 vs. uniprot
Match: A0A069E6F7_9PROT (Family 2 glycosyl transferase n=3 Tax=Hyphomonas TaxID=85 RepID=A0A069E6F7_9PROT)

HSP 1 Score: 132 bits (333), Expect = 2.040e-35
Identity = 58/92 (63.04%), Postives = 73/92 (79.35%), Query Frame = 2

Query:   62 RFEQAEMSLSSCFDMTDTPFQMVYIDGGSPRDIAHVLKTEVETRGHTYIRRDGFLTPNDARNTALPLINTEYIAFIDNDVVFQPGWLDALIQ 337
            RFEQA MSL++ FD  D PF+M+Y+DGGSP+ I+  LK  VE+ GHT+IRR G++TPNDARN ALPL++T Y+ FIDNDVVF  GWL AL+ 
Sbjct:   21 RFEQATMSLNAVFDTADLPFRMIYVDGGSPKAISDELKANVESHGHTFIRRPGYVTPNDARNIALPLVDTPYVVFIDNDVVFSEGWLSALVN 112

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BLAST of mRNA_L-digitata_M_contig101824.2.1 vs. uniprot
Match: A0A8J8CIF3_9CYAN (Glycosyltransferase n=1 Tax=Myxacorys almedinensis A TaxID=2690445 RepID=A0A8J8CIF3_9CYAN)

HSP 1 Score: 108 bits (269), Expect = 7.060e-26
Identity = 45/92 (48.91%), Postives = 63/92 (68.48%), Query Frame = 2

Query:   62 RFEQAEMSLSSCFDMTDTPFQMVYIDGGSPRDIAHVLKTEVETRGHTYIRRDGFLTPNDARNTALPLINTEYIAFIDNDVVFQPGWLDALIQ 337
            RF   + +L S +D T TPF+++Y+DGGSP  I H L+T+  ++G   IR + +L PN ARN A+P I TEY+ F+DNDV+  P WLD L+Q
Sbjct:   15 RFSFTQQNLESIYDHTQTPFELIYVDGGSPAPIQHYLQTQAHSKGFKLIRSEQYLAPNQARNLAIPQIKTEYLLFVDNDVLVSPAWLDRLVQ 106

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BLAST of mRNA_L-digitata_M_contig101824.2.1 vs. uniprot
Match: UPI001CA70E25 (glycosyltransferase n=1 Tax=Leptothermofonsia sichuanensis TaxID=2917832 RepID=UPI001CA70E25)

HSP 1 Score: 103 bits (256), Expect = 5.270e-24
Identity = 45/92 (48.91%), Postives = 60/92 (65.22%), Query Frame = 2

Query:   62 RFEQAEMSLSSCFDMTDTPFQMVYIDGGSPRDIAHVLKTEVETRGHTYIRRDGFLTPNDARNTALPLINTEYIAFIDNDVVFQPGWLDALIQ 337
            RF     +L S ++ T  PF ++Y+DGGSP      L+ + +TRG   IR D +L PN ARN A+P ++TEY+ FIDNDVV  PGWLD L+Q
Sbjct:   15 RFSFTRQNLESIYEHTTPPFSLIYVDGGSPAQEQRYLEAQAQTRGFKLIRTDHYLAPNQARNLAIPHVSTEYLLFIDNDVVVSPGWLDRLLQ 106

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BLAST of mRNA_L-digitata_M_contig101824.2.1 vs. uniprot
Match: A0A1E2WH46_9NOSO (Glycosyl transferase family 2 n=4 Tax=Nostoc TaxID=1177 RepID=A0A1E2WH46_9NOSO)

HSP 1 Score: 101 bits (252), Expect = 1.380e-23
Identity = 43/92 (46.74%), Postives = 62/92 (67.39%), Query Frame = 2

Query:   62 RFEQAEMSLSSCFDMTDTPFQMVYIDGGSPRDIAHVLKTEVETRGHTYIRRDGFLTPNDARNTALPLINTEYIAFIDNDVVFQPGWLDALIQ 337
            RF     SL S ++ T  PF +VYIDG SPR I H L+ + +T+G   IR + +L+PN ARN  L  +N+EY+ F+DNDV+  PGWL++L++
Sbjct:   15 RFSYTRESLESIYEHTQLPFSLVYIDGNSPRHIQHYLQEQSQTKGFQLIRTEHYLSPNQARNLGLQQVNSEYLVFVDNDVIVSPGWLNSLLE 106

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BLAST of mRNA_L-digitata_M_contig101824.2.1 vs. uniprot
Match: A0A3M9Z3F9_9CYAN (Glycosyltransferase n=2 Tax=Pseudanabaenales TaxID=2881377 RepID=A0A3M9Z3F9_9CYAN)

HSP 1 Score: 101 bits (252), Expect = 2.210e-23
Identity = 42/92 (45.65%), Postives = 63/92 (68.48%), Query Frame = 2

Query:   62 RFEQAEMSLSSCFDMTDTPFQMVYIDGGSPRDIAHVLKTEVETRGHTYIRRDGFLTPNDARNTALPLINTEYIAFIDNDVVFQPGWLDALIQ 337
            RF+ A++SL S ++ T  PF ++Y+D  SP  +   L+TE E +G   IR D FL+PN ARN  L  + ++Y+ F+DNDV+F PGWL+AL++
Sbjct:   35 RFQFAQLSLESLYEHTSYPFHLIYVDNNSPAKLQRYLQTESERKGFQLIRSDHFLSPNQARNVGLKQVRSKYVVFVDNDVIFAPGWLEALVK 126

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BLAST of mRNA_L-digitata_M_contig101824.2.1 vs. uniprot
Match: UPI000E5C61E7 (glycosyltransferase n=1 Tax=Algihabitans albus TaxID=2164067 RepID=UPI000E5C61E7)

HSP 1 Score: 100 bits (249), Expect = 5.550e-23
Identity = 43/92 (46.74%), Postives = 64/92 (69.57%), Query Frame = 2

Query:   62 RFEQAEMSLSSCFDMTDTPFQMVYIDGGSPRDIAHVLKTEVETRGHTYIRRDGFLTPNDARNTALPLINTEYIAFIDNDVVFQPGWLDALIQ 337
            RF   + SL S +D TD PF++VY+DG SPR IA  ++ + E RG   IR + +LTPN+ARN  +    T+Y+AF++NDV++ PGWL +L++
Sbjct:   15 RFGVTQESLESLYDNTDEPFELVYVDGKSPRRIARYIEEQAEARGFRRIRTERYLTPNEARNLGVAEARTKYVAFVENDVMYTPGWLSSLVR 106

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BLAST of mRNA_L-digitata_M_contig101824.2.1 vs. uniprot
Match: UPI001687D79C (glycosyltransferase n=2 Tax=unclassified Planktothrix TaxID=2648599 RepID=UPI001687D79C)

HSP 1 Score: 100 bits (248), Expect = 6.130e-23
Identity = 42/92 (45.65%), Postives = 60/92 (65.22%), Query Frame = 2

Query:   62 RFEQAEMSLSSCFDMTDTPFQMVYIDGGSPRDIAHVLKTEVETRGHTYIRRDGFLTPNDARNTALPLINTEYIAFIDNDVVFQPGWLDALIQ 337
            RF   E SL S ++ T TPF+++Y+DG SP      L+ + + +G   IRR+ FL PN ARN  L  ++T+Y+ F DND++F PGWLD L+Q
Sbjct:   15 RFSYTERSLESLYENTTTPFKLIYVDGNSPNRTKRYLEKQAKEKGFRLIRRENFLAPNQARNLILSEVDTKYVVFFDNDILFTPGWLDRLLQ 106

The following BLAST results are available for this feature:

BLAST of mRNA_L-digitata_M_contig101824.2.1 vs. uniprot

BLAST of mRNA_L-digitata_M_contig101824.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A059E591_9PROT	4.270e-53	91.30	Glyco_trans_2-like domain-containing protein n=3 T...	[more]
A0A2E3AWD0_9PROT	7.960e-48	81.52	Glyco_trans_2-like domain-containing protein n=1 T...	[more]
A0A062UCI2_9PROT	6.510e-38	66.30	Glyco_trans_2-like domain-containing protein n=1 T...	[more]
A0A069E6F7_9PROT	2.040e-35	63.04	Family 2 glycosyl transferase n=3 Tax=Hyphomonas T...	[more]
A0A8J8CIF3_9CYAN	7.060e-26	48.91	Glycosyltransferase n=1 Tax=Myxacorys almedinensis...	[more]
UPI001CA70E25	5.270e-24	48.91	glycosyltransferase n=1 Tax=Leptothermofonsia sich...	[more]
A0A1E2WH46_9NOSO	1.380e-23	46.74	Glycosyl transferase family 2 n=4 Tax=Nostoc TaxID...	[more]
A0A3M9Z3F9_9CYAN	2.210e-23	45.65	Glycosyltransferase n=2 Tax=Pseudanabaenales TaxID...	[more]
UPI000E5C61E7	5.550e-23	46.74	glycosyltransferase n=1 Tax=Algihabitans albus Tax...	[more]
UPI001687D79C	6.130e-23	45.65	glycosyltransferase n=2 Tax=unclassified Planktoth...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-digitata_M_contig101824	contig	L-digitata_M_contig101824:584..920 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Seed ortholog	1207058.L53_09685
PFAMs	GlcNAc,Glyco_tranf_2_3,Glycos_transf_2
Model size	337
Max annot lvl	2\|Bacteria
Hectar predicted targeting category	other localisation
Exons	1
Evalue	7.59e-50
EggNOG OGs	COG1216@1\|root,COG1216@2\|Bacteria
Description	Glycosyl transferase, family 2
Cds size	258
COG category	V

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682406623.2189054-UTR-L-digitata_M_contig101824:583..662	1682406623.2189054-UTR-L-digitata_M_contig101824:583..662	Laminaria digitata LdigPH10_18mv male	UTR	L-digitata_M_contig101824 584..662 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682406623.2270818-CDS-L-digitata_M_contig101824:662..920	1682406623.2270818-CDS-L-digitata_M_contig101824:662..920	Laminaria digitata LdigPH10_18mv male	CDS	L-digitata_M_contig101824 663..920 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-digitata_M_contig101824.2.1	prot_L-digitata_M_contig101824.2.1	Laminaria digitata LdigPH10_18mv male	polypeptide	L-digitata_M_contig101824 663..920 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-digitata_M_contig101824:584..920+
coding sequence from alignment at L-digitata_M_contig101824:584..920+

protein sequence of mRNA_L-digitata_M_contig101824.2.1

>prot_L-digitata_M_contig101824.2.1 ID=prot_L-digitata_M_contig101824.2.1|Name=mRNA_L-digitata_M_contig101824.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=86bp
MSLSSCFDMTDTPFQMVYIDGGSPRDIAHVLKTEVETRGHTYIRRDGFLT
PNDARNTALPLINTEYIAFIDNDVVFQPGWLDALIQ

mRNA from alignment at L-digitata_M_contig101824:584..920+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-digitata_M_contig101824.2.1 ID=mRNA_L-digitata_M_contig101824.2.1|Name=mRNA_L-digitata_M_contig101824.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=337bp|location=Sequence derived from alignment at L-digitata_M_contig101824:584..920+ (Laminaria digitata LdigPH10_18mv male)
ATGAACAACGAAATCACGCCCCCACAAATTGCCCGTGTAACGATTGTCCN
NNNNNNNNNAGCGTTTCGAACAGGCTGAGATGTCATTGAGTTCCTGCTTT
GACATGACCGATACGCCATTCCAAATGGTCTATATTGACGGTGGTTCGCC
GCGAGACATCGCACATGTTCTGAAGACTGAAGTGGAAACGCGGGGACACA
CTTACATCCGGCGGGACGGGTTCCTGACGCCCAATGACGCTCGCAACACC
GCGCTGCCATTAATTAACACCGAGTACATAGCATTCATCGACAATGATGT
TGTTTTTCAGCCTGGGTGGCTGGACGCTCTGATCCAA

Coding sequence (CDS) from alignment at L-digitata_M_contig101824:584..920+

>mRNA_L-digitata_M_contig101824.2.1 ID=mRNA_L-digitata_M_contig101824.2.1|Name=mRNA_L-digitata_M_contig101824.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=258bp|location=Sequence derived from alignment at L-digitata_M_contig101824:584..920+ (Laminaria digitata LdigPH10_18mv male)
ATGTCATTGAGTTCCTGCTTTGACATGACCGATACGCCATTCCAAATGGT
CTATATTGACGGTGGTTCGCCGCGAGACATCGCACATGTTCTGAAGACTG
AAGTGGAAACGCGGGGACACACTTACATCCGGCGGGACGGGTTCCTGACG
CCCAATGACGCTCGCAACACCGCGCTGCCATTAATTAACACCGAGTACAT
AGCATTCATCGACAATGATGTTGTTTTTCAGCCTGGGTGGCTGGACGCTC
TGATCCAA