mRNA_L-digitata_M_contig10177.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10177.1.1
Unique NamemRNA_L-digitata_M_contig10177.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10177.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10177contigL-digitata_M_contig10177:3201..4515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size374
Hectar predicted targeting categoryother localisation
Exons2
Cds size288
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406622.3201492-UTR-L-digitata_M_contig10177:3200..32841682406622.3201492-UTR-L-digitata_M_contig10177:3200..3284Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig10177 3201..3284 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406622.3281248-CDS-L-digitata_M_contig10177:3284..33061682406622.3281248-CDS-L-digitata_M_contig10177:3284..3306Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10177 3285..3306 +
1682406622.3389585-CDS-L-digitata_M_contig10177:4249..45151682406622.3389585-CDS-L-digitata_M_contig10177:4249..4515Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10177 4250..4515 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10177.1.1prot_L-digitata_M_contig10177.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10177 3285..4515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10177.1.1

>prot_L-digitata_M_contig10177.1.1 ID=prot_L-digitata_M_contig10177.1.1|Name=mRNA_L-digitata_M_contig10177.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=96bp
MEGRRYQELEAGVYAGLVLATAEETFGRQRATDLGRNAGLLPKHKKHHHA
VTSTTSSKSGIGDDDVPILSASKTKHAKKKDFLYCAERVGGDHHRT
back to top

mRNA from alignment at L-digitata_M_contig10177:3201..4515+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10177.1.1 ID=mRNA_L-digitata_M_contig10177.1.1|Name=mRNA_L-digitata_M_contig10177.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=1315bp|location=Sequence derived from alignment at L-digitata_M_contig10177:3201..4515+ (Laminaria digitata LdigPH10_18mv male)
AGAAAAACAGCAACAAAGCGCTTTGGGTAGCTTGACAGCAGGTCCACCAG
TGGATCCTCCCCCGCACGTCGAGCGCGCGTCGAAATGGAGGGCCGGCGAT
ACCAAGGTGATGATACGTTTAGGTGTACGGGTACGTCTCGTTGCGCGGGA
GATTTCGTCGACGAGAAAAGCGAGCGATGCGGATGTTGTGGAGAAGAGGC
AGTGGCAATGCTGCGTGGGTTGGAAGAAGAAAGTATACTCGTACTCGTAT
GATATGTGTGCACCGCAAAGTTTTACGAGTACGTGACGAGTATCATTCGT
AAGAGCTTTTGCTTTGTTCAGTGACAAAGGTTGCTGTTGTTGTGCTGGCG
AGGTGGTTCAACGCGGAACTTTGTTTGCATGCAAGGACGCACGGACAGCC
TCGCGCCGTGCTATAGTATCATAGGGTAGAGCTCGGCAGCGGCAGCGGCG
GGCGACGAGCCTATCAATATAGCAACGGTACAAACAGTATACGAGTACGA
GTACTAGAGTCTCGAGTTTCGGCAACCCTCTGTAATTCGGCGGGAACATG
CTGTTTTCTTCCTACGAAATTAGAGAGATCCTTTTCCACCGCCATCGTAT
CATCCTGGGAAGAGAGCTTTCCCCAAGCTCTGAACCCCCACCTCTCGCCA
GCACCATGCCCCGCATGAACCTCCCCCAGCAGCAATGTCCCGTTCCCCCC
GATTGCGTGTTGGTCATGATCATGGAGAGATTCTTGTTGTCGTGCGAGAG
AATACGCAGCAGGCCCAAACCCCCCTACCAGGTGATGCTTCGAAAAGGGA
GAGAAGCCGACAGCCAAGAACAAGCAGAAAAAAAATCGGTTGCGTCCTCT
ACTCTATCTGTTCGTCGAACAGGAGTATGAAGAAGTTGAAATCTTGGTAT
TTTTTTCGAATCTCCGCACAGCAGACCGCTGCAGAACAGGAGCAAGACAG
CAGTGCTTGCACGTTTCACCTATATATTCGTATCATGCTGAGTTGTTGCG
CCGCCCATTCATCACCCCTACCCGACCCGCCCCGGCCGGCCCCGAGCAGA
GCTAGAGGCGGGCGTGTACGCCGGGCTTGTGCTCGCGACCGCAGAGGAGA
CCTTCGGACGACAGAGAGCCACGGATCTTGGTCGAAACGCTGGGCTCTTG
CCTAAACACAAGAAGCATCATCATGCTGTAACGTCAACAACATCATCAAA
GAGTGGGATCGGGGATGATGATGTGCCAATACTGAGCGCGAGTAAAACGA
AGCATGCGAAGAAGAAGGATTTTCTTTATTGCGCGGAAAGAGTCGGAGGA
GACCATCATCGTACG
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig10177:3201..4515+

>mRNA_L-digitata_M_contig10177.1.1 ID=mRNA_L-digitata_M_contig10177.1.1|Name=mRNA_L-digitata_M_contig10177.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=288bp|location=Sequence derived from alignment at L-digitata_M_contig10177:3201..4515+ (Laminaria digitata LdigPH10_18mv male)
ATGGAGGGCCGGCGATACCAAGAGCTAGAGGCGGGCGTGTACGCCGGGCT
TGTGCTCGCGACCGCAGAGGAGACCTTCGGACGACAGAGAGCCACGGATC
TTGGTCGAAACGCTGGGCTCTTGCCTAAACACAAGAAGCATCATCATGCT
GTAACGTCAACAACATCATCAAAGAGTGGGATCGGGGATGATGATGTGCC
AATACTGAGCGCGAGTAAAACGAAGCATGCGAAGAAGAAGGATTTTCTTT
ATTGCGCGGAAAGAGTCGGAGGAGACCATCATCGTACG
back to top