mRNA_L-digitata_M_contig101702.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101702.1.1
Unique NamemRNA_L-digitata_M_contig101702.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig101702.1.1 vs. uniprot
Match: A0A8J6RRH1_9CYAN (Histidine kinase n=5 Tax=Cyanobacteria TaxID=1117 RepID=A0A8J6RRH1_9CYAN)

HSP 1 Score: 115 bits (287), Expect = 4.200e-25
Identity = 73/219 (33.33%), Postives = 113/219 (51.60%), Query Frame = 1
Query:  124 SAQAINDALDATPALIAYIDDRQRYRYVNATYAKWFGLSIDAMIGRTVQSVVDPGAYAVFSEAIDTAMKGEVATYPNLLELADGEARHVEARLVPQSDSTGKIIGCFLLVFDISERIVAEDALRRSEERYRSLVEICPDA---------VYVHRDFE-----------LVFTNPAAARMFGARDPDELVGQRLDNFIDPVDHDLARNRYER--LLSGIR 714
            S + I    D+ P  I+Y+D  QRYR+ N  Y +WFG S   + G+ ++ V+    Y    + I+ A+ G+  +Y +    ++G+ R+V+   VP     G++ G F+LV DI+ER  AE+ALR+SEERYR+ VE   +          VY++   +           L   N   A+M+G    +E+VG RL+NFI  V  D+    Y R  + SG R
Sbjct:  373 SEEQIRLITDSVPIYISYVDSEQRYRFNNRAYEEWFGYSRSQITGKHLKEVMGESIYQSVQKFIEAALSGQKVSYESAFTRSNGDQRYVQGTYVPHFGEGGEVKGFFVLVNDITERKQAEEALRKSEERYRAFVEQSSEGIWRFELEQPVYINSPEDEQIEQFYQYGYLAECNNVMAQMYGYDSAEEIVGTRLENFI--VSEDINNIEYLRAFIRSGYR 589          
BLAST of mRNA_L-digitata_M_contig101702.1.1 vs. uniprot
Match: A0A7V5DM13_9CHLR (PAS domain S-box protein (Fragment) n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7V5DM13_9CHLR)

HSP 1 Score: 112 bits (281), Expect = 2.560e-24
Identity = 81/265 (30.57%), Postives = 134/265 (50.57%), Query Frame = 1
Query:   49 ELIAELQGLRSKLARTEMTVSTGTVSAQAINDALDATPALIAYIDDRQRYRYVNATYAKWFGLSIDAMIGRTVQSVVDPGAYAVFSEAIDTAMKGEVATYPNLLELADGEARHVEARLVPQSDSTGKIIGCFLLVFDISERIVAEDALRRSEERYRSLVEICPDAVYVHRDFELVFTNPAAARMFGARDPDELVGQRLDNFIDPVDHDLARNRYERLLSGIRQ-EPHEFL---MRRVDRSVFSARTQMVPVTWKDDAAVMIVAHD 831
            E  A+L+   +++ R E  +       + + +++D    +I  +D   R+  V   + + +G   +  +G+T + V+ P A  V  EA   A+ G+   Y      ADG   + +  L P     G+++G   +  DI+    AE ALR SE+RYRSLV + PD + VHR  E++F N AAA +FGA DP  LVG++  +FI P   ++    +ER+  G  + EP   +   + R+D + F A    VP+ W+   AV ++  D
Sbjct:  813 ERAADLERSLAEVRRAEQALRESEARFRGLVESMDD---VIFTLDTEGRHTGVFGRWLETYGTPPEVYLGKTAREVLGPEAAPVHEEANARALAGQHVVYEWSAPGADGML-YFQTSLSPLRGPDGQVVGIVGVGRDITALKRAEQALRESEQRYRSLVNLSPDGILVHRYGEVLFANAAAAALFGAEDPQALVGRQTLDFIAPEFREMV---WERIRRGQEEREPQPLIEEKLLRLDGTEFYADVCAVPIEWEGAPAVQVIIRD 1070          
BLAST of mRNA_L-digitata_M_contig101702.1.1 vs. uniprot
Match: UPI001684773E (PAS domain S-box protein n=1 Tax=Coleofasciculus sp. FACHB-712 TaxID=2692789 RepID=UPI001684773E)

HSP 1 Score: 112 bits (280), Expect = 3.330e-24
Identity = 77/263 (29.28%), Postives = 121/263 (46.01%), Query Frame = 1
Query:   13 SRIKNDEEKSNAELIAELQGLRSKLARTEMTVSTGTVSAQAINDALDATPALIAYIDDRQRYRYVNATYAKWFGLSIDAMIGRTVQSVVDPGAYAVFSEAIDTAMKGEVATYPNLLELADGEARHVEARLVPQSDSTGKIIGCFLLVFDISERIVAEDALRRSEERYRSLVEICPDAVYVHRDFELVFTNPAAARMFGARDPDELVGQRLDNFIDPVDHDLARNRYERLLSGIRQEPHEFLMRRVDRSVFSARTQMVPVTWKD 801
            +R  N +E    E+  ++ G+  +  + E  +       + I DAL   P LIAY+D  Q Y + N  Y +WFG S   +IG+ ++ ++   AY      ++ A+ G+  TY + +    G  R V A  +P     G++ G   LV +I+ER VAE+ALR+SEERYRSL       V+       V T+    R +  +   E++     + I P D D    ++   +        EF +RR D        + VPV  KD
Sbjct:  477 ARRPNQDELYLTEIATQIAGIALERQQAEAALQQSEDQLRLITDAL---PVLIAYVDSEQCYHFNNRAYEQWFGKSQAEVIGQPIRKILGDSAYQAIQPYVEAALSGQEVTYESPISYEYGGMRWVNATYLPHFGEHGEVKGFIALVSNITERKVAEEALRQSEERYRSLARATSQMVWTSNPQGEVVTDQPDWRAYTGQSEAEILSWHWLDAIHPDDRDRIAEQWSNAIQTKSLYDTEFRLRRADGIYRYFNVRGVPVLSKD 736          
BLAST of mRNA_L-digitata_M_contig101702.1.1 vs. uniprot
Match: B7K937_GLOC7 (Histidine kinase n=1 Tax=Gloeothece citriformis (strain PCC 7424) TaxID=65393 RepID=B7K937_GLOC7)

HSP 1 Score: 112 bits (280), Expect = 3.490e-24
Identity = 68/207 (32.85%), Postives = 106/207 (51.21%), Query Frame = 1
Query:   49 ELIAELQGLRSKLARTEMTVSTGTVSAQAINDALDATPALIAYIDDRQRYRYVNATYAKWFGLSIDAMIGRTVQSVVDPGAYAVFSEAIDTAMKGEVATYPNLLELADGEARHVEARLVPQSDSTGKIIGCFLLVFDISERIVAEDALRRSEERYRSLVEICPDAVYVHRDFE-LVFTNPAAARMFGARDPDELVGQRLDNFIDPVD 666
            E+  E+ G    L R + T        + +    DATPALIAY+D  QRYR+ N  Y +WFG+ ID + G+T+Q  +    Y      I+  +KGE   Y   + L + E+R++ A  +P+ DS GK+ G   L+ D S+R   ED LR SEER+R +    P  +++  +    +F N     + G R  ++ +G+   + I P D
Sbjct:  481 EIAQEMIGFFLDLTRLKETEKALQQREEELRLIADATPALIAYVDSHQRYRFNNRRYEEWFGVPIDQISGKTLQEFLGDSLYEKVRPRIEKVLKGEQVIYEEEITLPNSESRYIRANYMPRFDSQGKVEGFVALINDFSDRKRMEDNLRESEERFRMMANSSPVMIWLTDETAGCIFVNQTWLNLTG-RTLEQELGEGWTDNIHPED 686          
BLAST of mRNA_L-digitata_M_contig101702.1.1 vs. uniprot
Match: UPI0018F05921 (PAS domain S-box protein n=10 Tax=unclassified Coleofasciculus TaxID=2692782 RepID=UPI0018F05921)

HSP 1 Score: 112 bits (280), Expect = 3.530e-24
Identity = 77/263 (29.28%), Postives = 121/263 (46.01%), Query Frame = 1
Query:   13 SRIKNDEEKSNAELIAELQGLRSKLARTEMTVSTGTVSAQAINDALDATPALIAYIDDRQRYRYVNATYAKWFGLSIDAMIGRTVQSVVDPGAYAVFSEAIDTAMKGEVATYPNLLELADGEARHVEARLVPQSDSTGKIIGCFLLVFDISERIVAEDALRRSEERYRSLVEICPDAVYVHRDFELVFTNPAAARMFGARDPDELVGQRLDNFIDPVDHDLARNRYERLLSGIRQEPHEFLMRRVDRSVFSARTQMVPVTWKD 801
            +R  N +E    E+  ++ G+  +  + E  +       + I DAL   P LIAY+D  Q Y + N  Y +WFG S   +IG+ ++ ++   AY      ++ A+ G+  TY + +    G  R V A  +P     G++ G   LV +I+ER VAE+ALR+SEERYRSL       V+       V T+    R +  +   E++     + I P D D    ++   +        EF +RR D        + VPV  KD
Sbjct:  787 ARRPNQDELYLTEIATQIAGIALERQQAEAALQQSEDQLRLITDAL---PVLIAYVDSEQCYHFNNRAYEQWFGKSQAEVIGQPIRKILGDSAYQAIQPYVEAALSGQEVTYESPISYEYGGMRWVNATYLPHFGEHGEVKGFIALVSNITERKVAEEALRQSEERYRSLARATSQMVWTSNPQGEVVTDQPDWRAYTGQSEAEILSWHWLDAIHPDDRDRIAEQWSNAIQTKSLYDTEFRLRRADGIYRYFNVRGVPVLSKD 1046          
BLAST of mRNA_L-digitata_M_contig101702.1.1 vs. uniprot
Match: UPI001689B96E (PAS domain S-box protein n=1 Tax=Microcoleus sp. FACHB-831 TaxID=2692827 RepID=UPI001689B96E)

HSP 1 Score: 112 bits (280), Expect = 3.570e-24
Identity = 74/219 (33.79%), Postives = 106/219 (48.40%), Query Frame = 1
Query:  148 LDATPALIAYIDDRQRYRYVNATYAKWFGLSIDAMIGRTVQSVVDPGAYAVFSEAIDTAMKGEVATYPNLLELADGEARHVEARLVPQSDSTGKIIGCFLLVFDISERIVAEDALRRSEERYRSLVEICPDAVY-VHRDFELVFTNPAAARMFGARDPDELVGQRLDNFIDPVDHDLARNRYERLLSGIRQEPHEFLMRRVDRSVFSARTQMVPVTWKD 801
            +DA P L+AYID +QRYR+ N  +  WFG +     G+ ++ VV   AY      I+ A+ G+  TY + +    GE R++ A  VP+    G + G   LV DIS+R+  +D LR+SEERYRSLVE     ++    + E+V   P  +   G +  DEL G    N + P D       +   LS       E  +RR D        + VPV   D
Sbjct:  101 IDAVPVLVAYIDAQQRYRFNNKAFQDWFGSTPSQFYGKHLEEVVGKTAYESVRPYIEAALAGQEVTYESSVTYKKGETRYIRATYVPRFAEDGVVEGFVALVKDISDRVFVQDELRKSEERYRSLVEASAQIIWDTKAEGEIVTPQPGWSEFTG-QSYDELKGWGWLNAVHPDDRTHTAQAWSAALSDRTFYQVEHRLRRKDGEYRYMSVRGVPVLEPD 318          
BLAST of mRNA_L-digitata_M_contig101702.1.1 vs. uniprot
Match: A0A7C5MG12_9DELT (PAS domain S-box protein (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C5MG12_9DELT)

HSP 1 Score: 110 bits (275), Expect = 1.250e-23
Identity = 69/238 (28.99%), Postives = 112/238 (47.06%), Query Frame = 1
Query:  124 SAQAINDALDATPALIAYIDDRQRYRYVNATYAKWFGLSIDAMIGRTVQSVVDPGAYAVFSEAIDTAMKGEVATYPNLLELADGEARHVEARLVPQSDSTGKIIGCFLLVFDISERIVAEDALRRSEERYRSLVEICPDAVYVHRDFELVFTNPAAARMFGARDPDELVGQRLDNFIDPVDHDLARNRYERLLSGIRQEPHEFLMRRVDRSVFSARTQMVPVTWKDDAAVMIVAHDIN 837
            + + I   +   P  +  +      R  N    + FG +    +GR    V    A       +  A  G    +       DG    +EA + P +   G+      +V D++ +  A+ ALR SE RYR+LVE+ PDA+ VH+D ++VF NPAAAR+ GA  P+EL+G+ + +F+ P D D    R  ++L+G      +    R+D S     T   P+T++   AV ++ HD+ 
Sbjct:  295 TTELIETVIRYAPLAMVLLTPEGVVRMWNPGAERLFGFTEAEAVGRLAPFVRPEDAEDFRVHNLMVANSGIPHKFDVTRHRKDGTPVEIEAYVAPINGPDGRAESVIGIVVDVTAQRQADRALRESELRYRTLVEMSPDAIAVHQDGKVVFANPAAARLLGAASPEELLGRPMLDFVHPRDRDFVARRVRQMLAGQSVPKADETFLRLDGSSLMVETSAAPITFQGRPAVQVLVHDVT 532          
BLAST of mRNA_L-digitata_M_contig101702.1.1 vs. uniprot
Match: A0A7V9CHE6_9BURK (EAL domain-containing protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7V9CHE6_9BURK)

HSP 1 Score: 110 bits (275), Expect = 1.390e-23
Identity = 76/247 (30.77%), Postives = 124/247 (50.20%), Query Frame = 1
Query:  124 SAQAINDALDATPALIAYIDDRQRYRYVNATYAKWFGLSIDAMIGRTVQSVVDPGAYAVFSEAIDTAMKGEVATYPNLLELADGEARHVEARLVPQSDSTGKIIGCFLLVFDISERIVAEDALRRSEERYRSLVEICPDAVYV-HRDFELVFTNPAAARMFGARDPDELVGQRLDNF---IDPVDHDLARNRYERLLSG---IRQEPHEFLMRRVDRSVFSARTQMVPVTWKD--DAAVMIVAHDIN 837
            S Q +    D  PALIAY+D  +RYR+ N TY +W  + +  M+G T++ V+    Y      ID A+ GE  ++   +E  DG  R+V++  VP   + G+++G ++LV D+++   AE+AL + +E  +  +E   DAV        + + NP A R+ G    DE  GQ L+     ID    +   N   R+L     ++   H  L+ R D S +S      P+  ++  DA V++V HD+ 
Sbjct:   57 SEQRLRMIADNIPALIAYVDTEERYRFYNQTYEEWVSIGVMEMLGCTMREVLGDETYEGVKSFIDAALAGEHVSFELDIE-KDGVRRYVQSTYVPHFSNAGQVLGFYVLVNDLTDHRQAEEALFKEKELAQVTLESIGDAVITTDARGSISYLNPVAERLTGWNQ-DEAFGQSLEQVFRVIDQASQEPLENPVARVLRNGAPVQSVGHNLLLSR-DGSQYSIEDSAAPIRTREGGDAGVVLVFHDVT 300          
BLAST of mRNA_L-digitata_M_contig101702.1.1 vs. uniprot
Match: A1AS95_PELPD (Histidine kinase n=2 Tax=Pelobacter propionicus TaxID=29543 RepID=A1AS95_PELPD)

HSP 1 Score: 109 bits (273), Expect = 2.870e-23
Identity = 83/233 (35.62%), Postives = 121/233 (51.93%), Query Frame = 1
Query:  148 LDATPALIAYIDDRQ-RYRYVNATYAKWFGL-SIDAMIGRTVQSVVDPGAYAVFSEAIDTAMKGEVATYPNLLEL-ADGEARHVEARLVPQSDSTGKIIGCFLLVFDISERIVAEDALRRSEERYRSLVEICPDAVYVHRDFELVFTNPAAARMFGARDPDELVGQRLDNFIDPVDHDLARNRYERLLSGIRQEPHEFLMRRVDRSVFSARTQMVPVTWKDDAAVMIVAHDIN 837
            LD  P+  A+I DR+ R+  VN   A + GL S   ++ +T+  V  P A A  + A D  +        +  EL   GE R  E  + P S   G+++G     +D++ER   E  LR SEERYR LVE+ PDA+++H     VF N AAAR+ GA+ P+EL G++  +FI P   ++   R +R L      P E LM R+D S        V  T++   AV+ +A DI+
Sbjct:  521 LDNFPSA-AWIKDREGRFLAVNRQLATFLGLASPQELVDKTIHDVA-PSALADQNTAEDRRVLTSGRPKHDEEELPVSGENRWFEVYISPVSID-GQVVGTVGCNWDVTERKKIEQNLRESEERYRRLVELSPDAIFIHSGNRFVFMNQAAARLLGAKTPEELYGRKPLDFIHPDQREMVGQRIDRALERRDNPPIEELMVRLDGSTVPVEMVSVHHTYRGKDAVLAIARDIS 750          
BLAST of mRNA_L-digitata_M_contig101702.1.1 vs. uniprot
Match: UPI00166A6384 (PAS domain S-box protein n=1 Tax=Chelatococcus reniformis TaxID=1494448 RepID=UPI00166A6384)

HSP 1 Score: 108 bits (269), Expect = 8.060e-23
Identity = 67/175 (38.29%), Postives = 96/175 (54.86%), Query Frame = 1
Query:   85 LARTEMTVSTGTVSAQAINDA------LDATPALIAYIDDRQRYRYVNATYAKWFGLSIDAMIGRTVQSVVDPGAYAVFSEAIDTAMKGEVATYPNLLELADGEARHVEARLVPQSDSTGKIIGCFLLVFDISERIVAEDALRRSEERYRSLVEICPDAVYVHR-DFELVFTNPA 588
            L RT +    G V A A  DA      +D+ P LIA+ID    YR+ NA Y  WF  S + ++G++V  +V P  +A    A+  A+ GE       +   DG +R  E RL P+   TG++ G FL V + ++R +AEDALR+SEER+RSL +  P  +++ R D  L F N A
Sbjct:   11 LVRTSLQAGNGGVWASAAVDAAALAEIIDSLPVLIAFIDRDFTYRFANAAYRDWFHRSPEDVVGKSVTDLVGPIGFAERLPAMRRALAGEPTAVELYIPHVDGRSRWGECRLTPRRTETGEVDGFFLFVVESTKRRLAEDALRQSEERFRSLAQSIPVPIWMERVDGGLGFINQA 185          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101702.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J6RRH1_9CYAN4.200e-2533.33Histidine kinase n=5 Tax=Cyanobacteria TaxID=1117 ... [more]
A0A7V5DM13_9CHLR2.560e-2430.57PAS domain S-box protein (Fragment) n=1 Tax=Anaero... [more]
UPI001684773E3.330e-2429.28PAS domain S-box protein n=1 Tax=Coleofasciculus s... [more]
B7K937_GLOC73.490e-2432.85Histidine kinase n=1 Tax=Gloeothece citriformis (s... [more]
UPI0018F059213.530e-2429.28PAS domain S-box protein n=10 Tax=unclassified Col... [more]
UPI001689B96E3.570e-2433.79PAS domain S-box protein n=1 Tax=Microcoleus sp. F... [more]
A0A7C5MG12_9DELT1.250e-2328.99PAS domain S-box protein (Fragment) n=1 Tax=Deltap... [more]
A0A7V9CHE6_9BURK1.390e-2330.77EAL domain-containing protein n=1 Tax=Burkholderia... [more]
A1AS95_PELPD2.870e-2335.62Histidine kinase n=2 Tax=Pelobacter propionicus Ta... [more]
UPI00166A63848.060e-2338.29PAS domain S-box protein n=1 Tax=Chelatococcus ren... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101702contigL-digitata_M_contig101702:87..923 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog65393.PCC7424_4442
PFAMsDUF4118,HATPase_c,HisKA,MHYT,PAS,PAS_3,PAS_4,PAS_9
Model size837
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.73e-25
EggNOG OGsCOG0642@1|root,COG2202@1|root,COG2461@1|root,COG4251@1|root,COG5000@1|root,COG2202@2|Bacteria,COG2205@2|Bacteria,COG2461@2|Bacteria,COG4251@2|Bacteria,COG5000@2|Bacteria,1G0A1@1117|Cyanobacteria,3KJ8K@43988|Cyanothece
DescriptionPFAM ATP-binding region ATPase domain protein
Cds size837
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406622.0703511-CDS-L-digitata_M_contig101702:86..9231682406622.0703511-CDS-L-digitata_M_contig101702:86..923Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101702 87..923 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101702.1.1prot_L-digitata_M_contig101702.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101702 87..923 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101702.1.1

>prot_L-digitata_M_contig101702.1.1 ID=prot_L-digitata_M_contig101702.1.1|Name=mRNA_L-digitata_M_contig101702.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=279bp
MSDASRIKNDEEKSNAELIAELQGLRSKLARTEMTVSTGTVSAQAINDAL
DATPALIAYIDDRQRYRYVNATYAKWFGLSIDAMIGRTVQSVVDPGAYAV
FSEAIDTAMKGEVATYPNLLELADGEARHVEARLVPQSDSTGKIIGCFLL
VFDISERIVAEDALRRSEERYRSLVEICPDAVYVHRDFELVFTNPAAARM
FGARDPDELVGQRLDNFIDPVDHDLARNRYERLLSGIRQEPHEFLMRRVD
RSVFSARTQMVPVTWKDDAAVMIVAHDIN
back to top

mRNA from alignment at L-digitata_M_contig101702:87..923+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101702.1.1 ID=mRNA_L-digitata_M_contig101702.1.1|Name=mRNA_L-digitata_M_contig101702.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=837bp|location=Sequence derived from alignment at L-digitata_M_contig101702:87..923+ (Laminaria digitata LdigPH10_18mv male)
ATGTCCGACGCCTCCAGAATAAAAAACGACGAAGAAAAGTCCAACGCGGA GCTCATTGCCGAGTTACAAGGGCTTCGGTCAAAACTCGCACGCACTGAAA TGACCGTTTCGACCGGCACTGTCTCTGCCCAGGCGATTAATGATGCGTTG GACGCGACGCCGGCCCTGATCGCTTATATCGACGACCGGCAACGATACCG ATATGTGAATGCGACGTATGCCAAATGGTTCGGTCTGTCGATTGACGCCA TGATAGGCCGGACAGTGCAGTCCGTGGTCGACCCCGGCGCCTATGCGGTT TTTTCCGAAGCCATCGACACGGCGATGAAGGGTGAGGTCGCGACATATCC AAATCTGCTGGAACTCGCCGATGGAGAAGCGCGGCATGTTGAGGCGCGGC TCGTCCCGCAATCCGACTCCACGGGAAAGATCATCGGTTGTTTTTTGCTT GTTTTCGATATTTCCGAGCGGATCGTCGCCGAGGATGCGCTGCGGCGTAG CGAGGAACGCTATCGCAGCCTTGTCGAGATATGCCCGGATGCGGTCTACG TTCATCGGGATTTCGAGCTTGTTTTCACGAATCCGGCCGCCGCGAGGATG TTCGGTGCGCGGGACCCCGACGAGCTTGTCGGTCAGCGGCTGGACAACTT TATCGACCCCGTCGATCACGATCTTGCCAGAAACAGATACGAGCGCCTTC TGTCTGGAATTCGCCAGGAGCCCCACGAATTCCTGATGCGGCGGGTCGAC CGGTCGGTTTTCTCTGCGCGGACGCAGATGGTGCCGGTGACATGGAAAGA CGACGCCGCCGTCATGATCGTTGCGCACGATATAAAC
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig101702:87..923+

>mRNA_L-digitata_M_contig101702.1.1 ID=mRNA_L-digitata_M_contig101702.1.1|Name=mRNA_L-digitata_M_contig101702.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=837bp|location=Sequence derived from alignment at L-digitata_M_contig101702:87..923+ (Laminaria digitata LdigPH10_18mv male)
ATGTCCGACGCCTCCAGAATAAAAAACGACGAAGAAAAGTCCAACGCGGA
GCTCATTGCCGAGTTACAAGGGCTTCGGTCAAAACTCGCACGCACTGAAA
TGACCGTTTCGACCGGCACTGTCTCTGCCCAGGCGATTAATGATGCGTTG
GACGCGACGCCGGCCCTGATCGCTTATATCGACGACCGGCAACGATACCG
ATATGTGAATGCGACGTATGCCAAATGGTTCGGTCTGTCGATTGACGCCA
TGATAGGCCGGACAGTGCAGTCCGTGGTCGACCCCGGCGCCTATGCGGTT
TTTTCCGAAGCCATCGACACGGCGATGAAGGGTGAGGTCGCGACATATCC
AAATCTGCTGGAACTCGCCGATGGAGAAGCGCGGCATGTTGAGGCGCGGC
TCGTCCCGCAATCCGACTCCACGGGAAAGATCATCGGTTGTTTTTTGCTT
GTTTTCGATATTTCCGAGCGGATCGTCGCCGAGGATGCGCTGCGGCGTAG
CGAGGAACGCTATCGCAGCCTTGTCGAGATATGCCCGGATGCGGTCTACG
TTCATCGGGATTTCGAGCTTGTTTTCACGAATCCGGCCGCCGCGAGGATG
TTCGGTGCGCGGGACCCCGACGAGCTTGTCGGTCAGCGGCTGGACAACTT
TATCGACCCCGTCGATCACGATCTTGCCAGAAACAGATACGAGCGCCTTC
TGTCTGGAATTCGCCAGGAGCCCCACGAATTCCTGATGCGGCGGGTCGAC
CGGTCGGTTTTCTCTGCGCGGACGCAGATGGTGCCGGTGACATGGAAAGA
CGACGCCGCCGTCATGATCGTTGCGCACGATATAAAC
back to top