mRNA_L-digitata_M_contig101702.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig101702.1.1 vs. uniprot
Match: A0A8J6RRH1_9CYAN (Histidine kinase n=5 Tax=Cyanobacteria TaxID=1117 RepID=A0A8J6RRH1_9CYAN) HSP 1 Score: 115 bits (287), Expect = 4.200e-25 Identity = 73/219 (33.33%), Postives = 113/219 (51.60%), Query Frame = 1
Query: 124 SAQAINDALDATPALIAYIDDRQRYRYVNATYAKWFGLSIDAMIGRTVQSVVDPGAYAVFSEAIDTAMKGEVATYPNLLELADGEARHVEARLVPQSDSTGKIIGCFLLVFDISERIVAEDALRRSEERYRSLVEICPDA---------VYVHRDFE-----------LVFTNPAAARMFGARDPDELVGQRLDNFIDPVDHDLARNRYER--LLSGIR 714
S + I D+ P I+Y+D QRYR+ N Y +WFG S + G+ ++ V+ Y + I+ A+ G+ +Y + ++G+ R+V+ VP G++ G F+LV DI+ER AE+ALR+SEERYR+ VE + VY++ + L N A+M+G +E+VG RL+NFI V D+ Y R + SG R
Sbjct: 373 SEEQIRLITDSVPIYISYVDSEQRYRFNNRAYEEWFGYSRSQITGKHLKEVMGESIYQSVQKFIEAALSGQKVSYESAFTRSNGDQRYVQGTYVPHFGEGGEVKGFFVLVNDITERKQAEEALRKSEERYRAFVEQSSEGIWRFELEQPVYINSPEDEQIEQFYQYGYLAECNNVMAQMYGYDSAEEIVGTRLENFI--VSEDINNIEYLRAFIRSGYR 589
BLAST of mRNA_L-digitata_M_contig101702.1.1 vs. uniprot
Match: A0A7V5DM13_9CHLR (PAS domain S-box protein (Fragment) n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7V5DM13_9CHLR) HSP 1 Score: 112 bits (281), Expect = 2.560e-24 Identity = 81/265 (30.57%), Postives = 134/265 (50.57%), Query Frame = 1
Query: 49 ELIAELQGLRSKLARTEMTVSTGTVSAQAINDALDATPALIAYIDDRQRYRYVNATYAKWFGLSIDAMIGRTVQSVVDPGAYAVFSEAIDTAMKGEVATYPNLLELADGEARHVEARLVPQSDSTGKIIGCFLLVFDISERIVAEDALRRSEERYRSLVEICPDAVYVHRDFELVFTNPAAARMFGARDPDELVGQRLDNFIDPVDHDLARNRYERLLSGIRQ-EPHEFL---MRRVDRSVFSARTQMVPVTWKDDAAVMIVAHD 831
E A+L+ +++ R E + + + +++D +I +D R+ V + + +G + +G+T + V+ P A V EA A+ G+ Y ADG + + L P G+++G + DI+ AE ALR SE+RYRSLV + PD + VHR E++F N AAA +FGA DP LVG++ +FI P ++ +ER+ G + EP + + R+D + F A VP+ W+ AV ++ D
Sbjct: 813 ERAADLERSLAEVRRAEQALRESEARFRGLVESMDD---VIFTLDTEGRHTGVFGRWLETYGTPPEVYLGKTAREVLGPEAAPVHEEANARALAGQHVVYEWSAPGADGML-YFQTSLSPLRGPDGQVVGIVGVGRDITALKRAEQALRESEQRYRSLVNLSPDGILVHRYGEVLFANAAAAALFGAEDPQALVGRQTLDFIAPEFREMV---WERIRRGQEEREPQPLIEEKLLRLDGTEFYADVCAVPIEWEGAPAVQVIIRD 1070
BLAST of mRNA_L-digitata_M_contig101702.1.1 vs. uniprot
Match: UPI001684773E (PAS domain S-box protein n=1 Tax=Coleofasciculus sp. FACHB-712 TaxID=2692789 RepID=UPI001684773E) HSP 1 Score: 112 bits (280), Expect = 3.330e-24 Identity = 77/263 (29.28%), Postives = 121/263 (46.01%), Query Frame = 1
Query: 13 SRIKNDEEKSNAELIAELQGLRSKLARTEMTVSTGTVSAQAINDALDATPALIAYIDDRQRYRYVNATYAKWFGLSIDAMIGRTVQSVVDPGAYAVFSEAIDTAMKGEVATYPNLLELADGEARHVEARLVPQSDSTGKIIGCFLLVFDISERIVAEDALRRSEERYRSLVEICPDAVYVHRDFELVFTNPAAARMFGARDPDELVGQRLDNFIDPVDHDLARNRYERLLSGIRQEPHEFLMRRVDRSVFSARTQMVPVTWKD 801
+R N +E E+ ++ G+ + + E + + I DAL P LIAY+D Q Y + N Y +WFG S +IG+ ++ ++ AY ++ A+ G+ TY + + G R V A +P G++ G LV +I+ER VAE+ALR+SEERYRSL V+ V T+ R + + E++ + I P D D ++ + EF +RR D + VPV KD
Sbjct: 477 ARRPNQDELYLTEIATQIAGIALERQQAEAALQQSEDQLRLITDAL---PVLIAYVDSEQCYHFNNRAYEQWFGKSQAEVIGQPIRKILGDSAYQAIQPYVEAALSGQEVTYESPISYEYGGMRWVNATYLPHFGEHGEVKGFIALVSNITERKVAEEALRQSEERYRSLARATSQMVWTSNPQGEVVTDQPDWRAYTGQSEAEILSWHWLDAIHPDDRDRIAEQWSNAIQTKSLYDTEFRLRRADGIYRYFNVRGVPVLSKD 736
BLAST of mRNA_L-digitata_M_contig101702.1.1 vs. uniprot
Match: B7K937_GLOC7 (Histidine kinase n=1 Tax=Gloeothece citriformis (strain PCC 7424) TaxID=65393 RepID=B7K937_GLOC7) HSP 1 Score: 112 bits (280), Expect = 3.490e-24 Identity = 68/207 (32.85%), Postives = 106/207 (51.21%), Query Frame = 1
Query: 49 ELIAELQGLRSKLARTEMTVSTGTVSAQAINDALDATPALIAYIDDRQRYRYVNATYAKWFGLSIDAMIGRTVQSVVDPGAYAVFSEAIDTAMKGEVATYPNLLELADGEARHVEARLVPQSDSTGKIIGCFLLVFDISERIVAEDALRRSEERYRSLVEICPDAVYVHRDFE-LVFTNPAAARMFGARDPDELVGQRLDNFIDPVD 666
E+ E+ G L R + T + + DATPALIAY+D QRYR+ N Y +WFG+ ID + G+T+Q + Y I+ +KGE Y + L + E+R++ A +P+ DS GK+ G L+ D S+R ED LR SEER+R + P +++ + +F N + G R ++ +G+ + I P D
Sbjct: 481 EIAQEMIGFFLDLTRLKETEKALQQREEELRLIADATPALIAYVDSHQRYRFNNRRYEEWFGVPIDQISGKTLQEFLGDSLYEKVRPRIEKVLKGEQVIYEEEITLPNSESRYIRANYMPRFDSQGKVEGFVALINDFSDRKRMEDNLRESEERFRMMANSSPVMIWLTDETAGCIFVNQTWLNLTG-RTLEQELGEGWTDNIHPED 686
BLAST of mRNA_L-digitata_M_contig101702.1.1 vs. uniprot
Match: UPI0018F05921 (PAS domain S-box protein n=10 Tax=unclassified Coleofasciculus TaxID=2692782 RepID=UPI0018F05921) HSP 1 Score: 112 bits (280), Expect = 3.530e-24 Identity = 77/263 (29.28%), Postives = 121/263 (46.01%), Query Frame = 1
Query: 13 SRIKNDEEKSNAELIAELQGLRSKLARTEMTVSTGTVSAQAINDALDATPALIAYIDDRQRYRYVNATYAKWFGLSIDAMIGRTVQSVVDPGAYAVFSEAIDTAMKGEVATYPNLLELADGEARHVEARLVPQSDSTGKIIGCFLLVFDISERIVAEDALRRSEERYRSLVEICPDAVYVHRDFELVFTNPAAARMFGARDPDELVGQRLDNFIDPVDHDLARNRYERLLSGIRQEPHEFLMRRVDRSVFSARTQMVPVTWKD 801
+R N +E E+ ++ G+ + + E + + I DAL P LIAY+D Q Y + N Y +WFG S +IG+ ++ ++ AY ++ A+ G+ TY + + G R V A +P G++ G LV +I+ER VAE+ALR+SEERYRSL V+ V T+ R + + E++ + I P D D ++ + EF +RR D + VPV KD
Sbjct: 787 ARRPNQDELYLTEIATQIAGIALERQQAEAALQQSEDQLRLITDAL---PVLIAYVDSEQCYHFNNRAYEQWFGKSQAEVIGQPIRKILGDSAYQAIQPYVEAALSGQEVTYESPISYEYGGMRWVNATYLPHFGEHGEVKGFIALVSNITERKVAEEALRQSEERYRSLARATSQMVWTSNPQGEVVTDQPDWRAYTGQSEAEILSWHWLDAIHPDDRDRIAEQWSNAIQTKSLYDTEFRLRRADGIYRYFNVRGVPVLSKD 1046
BLAST of mRNA_L-digitata_M_contig101702.1.1 vs. uniprot
Match: UPI001689B96E (PAS domain S-box protein n=1 Tax=Microcoleus sp. FACHB-831 TaxID=2692827 RepID=UPI001689B96E) HSP 1 Score: 112 bits (280), Expect = 3.570e-24 Identity = 74/219 (33.79%), Postives = 106/219 (48.40%), Query Frame = 1
Query: 148 LDATPALIAYIDDRQRYRYVNATYAKWFGLSIDAMIGRTVQSVVDPGAYAVFSEAIDTAMKGEVATYPNLLELADGEARHVEARLVPQSDSTGKIIGCFLLVFDISERIVAEDALRRSEERYRSLVEICPDAVY-VHRDFELVFTNPAAARMFGARDPDELVGQRLDNFIDPVDHDLARNRYERLLSGIRQEPHEFLMRRVDRSVFSARTQMVPVTWKD 801
+DA P L+AYID +QRYR+ N + WFG + G+ ++ VV AY I+ A+ G+ TY + + GE R++ A VP+ G + G LV DIS+R+ +D LR+SEERYRSLVE ++ + E+V P + G + DEL G N + P D + LS E +RR D + VPV D
Sbjct: 101 IDAVPVLVAYIDAQQRYRFNNKAFQDWFGSTPSQFYGKHLEEVVGKTAYESVRPYIEAALAGQEVTYESSVTYKKGETRYIRATYVPRFAEDGVVEGFVALVKDISDRVFVQDELRKSEERYRSLVEASAQIIWDTKAEGEIVTPQPGWSEFTG-QSYDELKGWGWLNAVHPDDRTHTAQAWSAALSDRTFYQVEHRLRRKDGEYRYMSVRGVPVLEPD 318
BLAST of mRNA_L-digitata_M_contig101702.1.1 vs. uniprot
Match: A0A7C5MG12_9DELT (PAS domain S-box protein (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C5MG12_9DELT) HSP 1 Score: 110 bits (275), Expect = 1.250e-23 Identity = 69/238 (28.99%), Postives = 112/238 (47.06%), Query Frame = 1
Query: 124 SAQAINDALDATPALIAYIDDRQRYRYVNATYAKWFGLSIDAMIGRTVQSVVDPGAYAVFSEAIDTAMKGEVATYPNLLELADGEARHVEARLVPQSDSTGKIIGCFLLVFDISERIVAEDALRRSEERYRSLVEICPDAVYVHRDFELVFTNPAAARMFGARDPDELVGQRLDNFIDPVDHDLARNRYERLLSGIRQEPHEFLMRRVDRSVFSARTQMVPVTWKDDAAVMIVAHDIN 837
+ + I + P + + R N + FG + +GR V A + A G + DG +EA + P + G+ +V D++ + A+ ALR SE RYR+LVE+ PDA+ VH+D ++VF NPAAAR+ GA P+EL+G+ + +F+ P D D R ++L+G + R+D S T P+T++ AV ++ HD+
Sbjct: 295 TTELIETVIRYAPLAMVLLTPEGVVRMWNPGAERLFGFTEAEAVGRLAPFVRPEDAEDFRVHNLMVANSGIPHKFDVTRHRKDGTPVEIEAYVAPINGPDGRAESVIGIVVDVTAQRQADRALRESELRYRTLVEMSPDAIAVHQDGKVVFANPAAARLLGAASPEELLGRPMLDFVHPRDRDFVARRVRQMLAGQSVPKADETFLRLDGSSLMVETSAAPITFQGRPAVQVLVHDVT 532
BLAST of mRNA_L-digitata_M_contig101702.1.1 vs. uniprot
Match: A0A7V9CHE6_9BURK (EAL domain-containing protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7V9CHE6_9BURK) HSP 1 Score: 110 bits (275), Expect = 1.390e-23 Identity = 76/247 (30.77%), Postives = 124/247 (50.20%), Query Frame = 1
Query: 124 SAQAINDALDATPALIAYIDDRQRYRYVNATYAKWFGLSIDAMIGRTVQSVVDPGAYAVFSEAIDTAMKGEVATYPNLLELADGEARHVEARLVPQSDSTGKIIGCFLLVFDISERIVAEDALRRSEERYRSLVEICPDAVYV-HRDFELVFTNPAAARMFGARDPDELVGQRLDNF---IDPVDHDLARNRYERLLSG---IRQEPHEFLMRRVDRSVFSARTQMVPVTWKD--DAAVMIVAHDIN 837
S Q + D PALIAY+D +RYR+ N TY +W + + M+G T++ V+ Y ID A+ GE ++ +E DG R+V++ VP + G+++G ++LV D+++ AE+AL + +E + +E DAV + + NP A R+ G DE GQ L+ ID + N R+L ++ H L+ R D S +S P+ ++ DA V++V HD+
Sbjct: 57 SEQRLRMIADNIPALIAYVDTEERYRFYNQTYEEWVSIGVMEMLGCTMREVLGDETYEGVKSFIDAALAGEHVSFELDIE-KDGVRRYVQSTYVPHFSNAGQVLGFYVLVNDLTDHRQAEEALFKEKELAQVTLESIGDAVITTDARGSISYLNPVAERLTGWNQ-DEAFGQSLEQVFRVIDQASQEPLENPVARVLRNGAPVQSVGHNLLLSR-DGSQYSIEDSAAPIRTREGGDAGVVLVFHDVT 300
BLAST of mRNA_L-digitata_M_contig101702.1.1 vs. uniprot
Match: A1AS95_PELPD (Histidine kinase n=2 Tax=Pelobacter propionicus TaxID=29543 RepID=A1AS95_PELPD) HSP 1 Score: 109 bits (273), Expect = 2.870e-23 Identity = 83/233 (35.62%), Postives = 121/233 (51.93%), Query Frame = 1
Query: 148 LDATPALIAYIDDRQ-RYRYVNATYAKWFGL-SIDAMIGRTVQSVVDPGAYAVFSEAIDTAMKGEVATYPNLLEL-ADGEARHVEARLVPQSDSTGKIIGCFLLVFDISERIVAEDALRRSEERYRSLVEICPDAVYVHRDFELVFTNPAAARMFGARDPDELVGQRLDNFIDPVDHDLARNRYERLLSGIRQEPHEFLMRRVDRSVFSARTQMVPVTWKDDAAVMIVAHDIN 837
LD P+ A+I DR+ R+ VN A + GL S ++ +T+ V P A A + A D + + EL GE R E + P S G+++G +D++ER E LR SEERYR LVE+ PDA+++H VF N AAAR+ GA+ P+EL G++ +FI P ++ R +R L P E LM R+D S V T++ AV+ +A DI+
Sbjct: 521 LDNFPSA-AWIKDREGRFLAVNRQLATFLGLASPQELVDKTIHDVA-PSALADQNTAEDRRVLTSGRPKHDEEELPVSGENRWFEVYISPVSID-GQVVGTVGCNWDVTERKKIEQNLRESEERYRRLVELSPDAIFIHSGNRFVFMNQAAARLLGAKTPEELYGRKPLDFIHPDQREMVGQRIDRALERRDNPPIEELMVRLDGSTVPVEMVSVHHTYRGKDAVLAIARDIS 750
BLAST of mRNA_L-digitata_M_contig101702.1.1 vs. uniprot
Match: UPI00166A6384 (PAS domain S-box protein n=1 Tax=Chelatococcus reniformis TaxID=1494448 RepID=UPI00166A6384) HSP 1 Score: 108 bits (269), Expect = 8.060e-23 Identity = 67/175 (38.29%), Postives = 96/175 (54.86%), Query Frame = 1
Query: 85 LARTEMTVSTGTVSAQAINDA------LDATPALIAYIDDRQRYRYVNATYAKWFGLSIDAMIGRTVQSVVDPGAYAVFSEAIDTAMKGEVATYPNLLELADGEARHVEARLVPQSDSTGKIIGCFLLVFDISERIVAEDALRRSEERYRSLVEICPDAVYVHR-DFELVFTNPA 588
L RT + G V A A DA +D+ P LIA+ID YR+ NA Y WF S + ++G++V +V P +A A+ A+ GE + DG +R E RL P+ TG++ G FL V + ++R +AEDALR+SEER+RSL + P +++ R D L F N A
Sbjct: 11 LVRTSLQAGNGGVWASAAVDAAALAEIIDSLPVLIAFIDRDFTYRFANAAYRDWFHRSPEDVVGKSVTDLVGPIGFAERLPAMRRALAGEPTAVELYIPHVDGRSRWGECRLTPRRTETGEVDGFFLFVVESTKRRLAEDALRQSEERFRSLAQSIPVPIWMERVDGGLGFINQA 185 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101702.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig101702.1.1 >prot_L-digitata_M_contig101702.1.1 ID=prot_L-digitata_M_contig101702.1.1|Name=mRNA_L-digitata_M_contig101702.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=279bp MSDASRIKNDEEKSNAELIAELQGLRSKLARTEMTVSTGTVSAQAINDALback to top mRNA from alignment at L-digitata_M_contig101702:87..923+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig101702.1.1 ID=mRNA_L-digitata_M_contig101702.1.1|Name=mRNA_L-digitata_M_contig101702.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=837bp|location=Sequence derived from alignment at L-digitata_M_contig101702:87..923+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig101702:87..923+ >mRNA_L-digitata_M_contig101702.1.1 ID=mRNA_L-digitata_M_contig101702.1.1|Name=mRNA_L-digitata_M_contig101702.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=837bp|location=Sequence derived from alignment at L-digitata_M_contig101702:87..923+ (Laminaria digitata LdigPH10_18mv male)back to top |