mRNA_L-digitata_M_contig10159.3.2 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10159.3.2
Unique NamemRNA_L-digitata_M_contig10159.3.2
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig10159.3.2 vs. uniprot
Match: A0A6H5JT97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT97_9PHAE)

HSP 1 Score: 445 bits (1145), Expect = 2.380e-148
Identity = 295/425 (69.41%), Postives = 322/425 (75.76%), Query Frame = 1
Query:  193 IATTNKGGAGAVADTTTAVKIDLLDSFQELRKSWPKDMARLFDPALSDDRRAELWEIMCEGGDRLRQRFAWGIPDERALRIVEHFGPVVEIGSGLGYWAMLLRARGVDFNAYDKAAGSPDTGGSPP-RQRLPQKGSKSGTPAGTDGGGEKKKKLAEAGEDEEEAPSFWSKVEEGGPDVLEEECNEKRSLFLCYPDDFEGETESLGLRCLHAFEGDVVIHVGELFGDSVSMTPGQTPWGRTTSSDCQEELASKFHCILKVPLPRWPHSRDTLTVWKRHAFCAIHYDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESVSSAGSGEPAAAHGAEIAGLKDVKCSRGGGQGGXXXXXXXXXXXXXXXXXXXXSEEGFPIGMPDLDMYAFLPADEQMSCAQAAPCVRFLLGA 1464
            +  T  G  GA A +T+   I+LLD F++LR SWPK+MARL DP+L D+RR+ELWEIMC GGD LRQRFAW IPDERALRI++HFGP+VEIGSGLGYWA LLRARGVD NAYDK AG+PDT  + P   R   K +       +   G  K+   E G DE   PSFW KV EGGPDVLEE CNE RSLFLCYPDDFEGETESLGLRCLHAFEGDVVIHVGELFGDSVSMTPGQ+PWGRTTS +CQEELASKFHCILKVPLP WPHSRDTLTVWKRH+FC+I YDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     +  G               K  K + G G+  XXXXXXXXXXXX        S EG PIGM D+DMYAF+P DE M CAQAAPC RFLL A
Sbjct:   16 VGATAAGADGAGAKSTS---IELLDKFKKLRASWPKEMARLLDPSLPDERRSELWEIMCSGGDVLRQRFAWAIPDERALRIIKHFGPIVEIGSGLGYWAKLLRARGVDINAYDKVAGTPDTASAAPDSSRTKGKSTSKDAKVKSAAEGVVKEDADEGGGDE--TPSFWIKVNEGGPDVLEEPCNEGRSLFLCYPDDFEGETESLGLRCLHAFEGDVVIHVGELFGDSVSMTPGQSPWGRTTSQECQEELASKFHCILKVPLPSWPHSRDTLTVWKRHSFCSIQYDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDREANGKGR--------------KGGKKAEGSGKX-XXXXXXXXXXXXSSGSDDFGSIEGLPIGMLDVDMYAFVPEDETMPCAQAAPCARFLLDA 420          
BLAST of mRNA_L-digitata_M_contig10159.3.2 vs. uniprot
Match: D8LFK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK6_ECTSI)

HSP 1 Score: 439 bits (1130), Expect = 2.140e-135
Identity = 257/409 (62.84%), Postives = 285/409 (69.68%), Query Frame = 1
Query:  253 IDLLDSFQELRKSWPKDMARLFDPALSDDRRAELWEIMCEGGDRLRQRFAWGIPDERALRIVEHFGPVVEIGSGLGYWAMLLRARGVDFNAYDKAAGSPDTGGSPP-----RQRLPQKGSKSGTPAGTDGGGEKKKKLAEAGEDEEEAPSFWSKVEEGGPDVLEEECNEKRSLFLCYPDDFEGETESLGLRCLHAFEGDVVIHVGELFGDSVSMTPGQTPWGRTTSSDCQEELASKFHCILKVPLPRWPHSRDTLTVWKRHAFCAIHYDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESVSSAGSGEPAAAHGAEIAGLKDVKCSRGGGQGGXXXXXXXXXXXXXXXXXXXXSEEGFPIGMPDLDMYAFLPADEQMSCAQAAPCVRFLLGA 1464
            I+LLD F++LR SWPK+MARL DP+L D+RR+ELWEIMC GGD LRQRFAW IPDERALRI++HFGP+VE+GSGLGYWA LLRARGVD N YDK AG+PDT  + P     + +   K +K  + A  DG    K+   E G  E  APSFW KV EGGPDVLEE CNE RSLFLCYPDDFEGETESLGLRCLHAFEGDVVIHVGELFGDSVSMTPGQ+PWGRTTS +CQEELASKFHCILKVPLP WPHSRDTLTVWKRH+FC+I YDD     X   XXXXXXXXXXXX                        +  +S+  G     HG      K            XXXXXXXXXX          S EG PIGM D+DMYAF+P DE+M CAQAAPC RFLL A
Sbjct:   34 IELLDEFKKLRASWPKEMARLLDPSLPDERRSELWEIMCSGGDVLRQRFAWAIPDERALRIIKHFGPIVEVGSGLGYWAKLLRARGVDINPYDKVAGTPDTASAAPDSSQTKGKSTSKDAKVKSAAEGDG----KEDADEGGGGE--APSFWIKVNEGGPDVLEEPCNEDRSLFLCYPDDFEGETESLGLRCLHAFEGDVVIHVGELFGDSVSMTPGQSPWGRTTSQECQEELASKFHCILKVPLPSWPHSRDTLTVWKRHSFCSIQYDDDDDSDXNEAXXXXXXXXXXXXAQGKEPGE----------------KGKNSSPKGVSGDGHGXXXXXRKGXXXXXXXXXXXXXXXXXXXXXRSSSGSDDFGSIEGLPIGMLDVDMYAFVPEDERMPCAQAAPCARFLLDA 420          
BLAST of mRNA_L-digitata_M_contig10159.3.2 vs. uniprot
Match: A0A1V9YVH9_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YVH9_9STRA)

HSP 1 Score: 206 bits (525), Expect = 3.960e-58
Identity = 105/247 (42.51%), Postives = 149/247 (60.32%), Query Frame = 1
Query:  295 PKDMARLFDPALSDDRRAELWEIMCEGGDRLRQRFAWGIPDERALRIVEHFGPVVEIGSGLGYWAMLLRARGVDFNAYDKAAGSPDTGGSPPRQRLPQKGSKSGTPAGTDGGGEKKKKLAEAGEDEEEAPSFWSKVEEGGPDVLEEECNEKRSLFLCYPDDFEGETESLGLRCLHAFEGDVVIHVGELFGDSVSMTPGQTPWGRTTSSDCQEELASKFHCILKVPLPRWPHSRDTLTVWKRHAFCAI 1035
            PK+M RLFDP+L D +R EL+EI+    D +  +++W IPDERALRI++H+GP+VE+G+G GYW  LL+ RGVD   +D                +P               GE+K  +++  +++E+    W +VE+G P+VL E   + R+L LCYPDDFE   ES+ L CL  + GD +IH+GE  G +V +     PWGRT++ + Q  LA+ FH +L+VPLP W  S DTLTVWKR   C +
Sbjct:   31 PKEMNRLFDPSLDDTKREELFEIL---DDSVASKYSWAIPDERALRIIKHYGPIVEMGAGSGYWGRLLQLRGVDIKCFDL--------------HVP---------------GEEKGDVSDEDDEDEQVRMTWMEVEQGTPEVLPE--YKDRTLLLCYPDDFEDSEESMALECLDNYTGDTIIHIGEWLGQTVCLPE---PWGRTSAPEFQTRLAAVFHKVLQVPLPSWHSSMDTLTVWKRTKTCIV 240          
BLAST of mRNA_L-digitata_M_contig10159.3.2 vs. uniprot
Match: A0A024UED4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UED4_9STRA)

HSP 1 Score: 207 bits (526), Expect = 4.060e-58
Identity = 113/268 (42.16%), Postives = 160/268 (59.70%), Query Frame = 1
Query:  235 TTTAVKIDLLDSFQELRKSWPKDMARLFDPALSDDRRAELWEIMCEGGDRLRQRFAWGIPDERALRIVEHFGPVVEIGSGLGYWAMLLRARGVDFNAYDKAAGSPDTGGSPPRQRLPQKGSKSGTPAGTDGGGEKKKKLAEAGEDEEEAPSF-WSKVEEGGPDVLEEECNEKRSLFLCYPDDFEGETESLGLRCLHAFEGDVVIHVGELFGDSVSMTPGQTPWGRTTSSDCQEELASKFHCILKVPLPRWPHSRDTLTVWKRHAFCAI 1035
            T TA     LD ++  +KS PK+MAR+FDP L D+ R EL+  +    D +  +++W IPDERALRI++H+GP+VEIG+G GYW  LL+ RGVD   +D                L   G +S   A +D   ++++       D +++P   W +VE+G P+VL +  N  R+L LCYPDD+E   ES+   CL+ + G+ VIH+GELFG ++ +     PWGRT+S + Q  LA+ FH IL+VPL  W  S DTLTVWKR   C +
Sbjct:   15 TLTATCNPYLDFYRSFQKSQPKEMARIFDPDLDDETREELFNAV---DDNVAAKYSWAIPDERALRIIKHYGPIVEIGAGTGYWGRLLQLRGVDIKCFD----------------LHVPGDESANGADSDDASDEER-------DVDDSPRMTWLEVEQGTPEVLTKHKN--RTLLLCYPDDYEDSDESMAEACLNYYTGEYVIHIGELFGHTLCLPE---PWGRTSSPEFQTRLAAVFHKILQVPLHSWHSSVDTLTVWKRTKTCIV 251          
BLAST of mRNA_L-digitata_M_contig10159.3.2 vs. uniprot
Match: A0A1V9YJ57_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YJ57_9STRA)

HSP 1 Score: 204 bits (519), Expect = 3.100e-57
Identity = 104/258 (40.31%), Postives = 153/258 (59.30%), Query Frame = 1
Query:  262 LDSFQELRKSWPKDMARLFDPALSDDRRAELWEIMCEGGDRLRQRFAWGIPDERALRIVEHFGPVVEIGSGLGYWAMLLRARGVDFNAYDKAAGSPDTGGSPPRQRLPQKGSKSGTPAGTDGGGEKKKKLAEAGEDEEEAPSFWSKVEEGGPDVLEEECNEKRSLFLCYPDDFEGETESLGLRCLHAFEGDVVIHVGELFGDSVSMTPGQTPWGRTTSSDCQEELASKFHCILKVPLPRWPHSRDTLTVWKRHAFCAI 1035
            LD +++     PK+M R+FDP L D++R EL+ ++    D +  +++W IPDERALRI++H+GP+VE+G+G GYW  LL+ RGVD   +D                +P              G E  K  ++  ++ EE    W  V++G P+VL++  + KR+L LCYPDDFE   ES+ L CL+ + GD +IHVGE  G +V +     PWGRT++ + Q +L++ FH +L+VPLP W  S DTLTVWKR   C +
Sbjct:   19 LDFYRDFEAKQPKEMPRIFDPELDDEKREELFNLL---DDSVAAKYSWAIPDERALRIIKHYGPIVEMGAGSGYWGRLLQLRGVDVKCFDL--------------HVP--------------GTESAKDESDDEDEAEEERMTWMDVQQGTPEVLKK--HSKRTLLLCYPDDFEDSEESMALECLNNYTGDTIIHVGEWLGQTVCLPE---PWGRTSAPEFQTQLSAVFHKVLQVPLPSWHSSIDTLTVWKRTKTCIV 240          
BLAST of mRNA_L-digitata_M_contig10159.3.2 vs. uniprot
Match: W4G0Y3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G0Y3_9STRA)

HSP 1 Score: 203 bits (517), Expect = 8.130e-57
Identity = 114/265 (43.02%), Postives = 152/265 (57.36%), Query Frame = 1
Query:  241 TAVKIDLLDSFQELRKSWPKDMARLFDPALSDDRRAELWEIMCEGGDRLRQRFAWGIPDERALRIVEHFGPVVEIGSGLGYWAMLLRARGVDFNAYDKAAGSPDTGGSPPRQRLPQKGSKSGTPAGTDGGGEKKKKLAEAGEDEEEAPSFWSKVEEGGPDVLEEECNEKRSLFLCYPDDFEGETESLGLRCLHAFEGDVVIHVGELFGDSVSMTPGQTPWGRTTSSDCQEELASKFHCILKVPLPRWPHSRDTLTVWKRHAFCAI 1035
            TA     LD ++  +KS PKDMARLFDP L DD R EL+ ++    D++  +++W IPDERALRI++H+GP+VEIG+G GYW  LL+ RGVD   +D                L   G +       DG GE      E           W  VE+G P+VL     +KR+L LCYPDD+E   ES+   CL+ + G+ VIH+GELFG ++ +     PWGRT+S + Q  LA+ FH +L+VPL  W  S DTLTVWKR   C +
Sbjct:   18 TATCNPYLDFYRTFQKSQPKDMARLFDPDLDDDTREELFNLV---DDKVAAKYSWAIPDERALRIIKHYGPIVEIGAGTGYWGRLLQLRGVDVKCFD----------------LHVPGEEG------DGAGEXXXXXXEP------ERMTWLDVEQGTPEVLSR--FKKRTLLLCYPDDYEDSEESMAEACLNNYTGEYVIHIGELFGHTLCLPE---PWGRTSSPEFQTRLAAVFHKVLQVPLNSWHSSVDTLTVWKRTKTCIV 246          
BLAST of mRNA_L-digitata_M_contig10159.3.2 vs. uniprot
Match: A0A6A5AE36_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AE36_9STRA)

HSP 1 Score: 201 bits (510), Expect = 5.190e-56
Identity = 112/266 (42.11%), Postives = 151/266 (56.77%), Query Frame = 1
Query:  241 TAVKIDLLDSFQELRKSWPKDMARLFDPALSDDRRAELWEIMCEGGDRLRQRFAWGIPDERALRIVEHFGPVVEIGSGLGYWAMLLRARGVDFNAYDKAAGSPDTGGSPPRQRLPQKGSKSGTPAGTDGGGEKKKKLAEAGEDEEEAPSF-WSKVEEGGPDVLEEECNEKRSLFLCYPDDFEGETESLGLRCLHAFEGDVVIHVGELFGDSVSMTPGQTPWGRTTSSDCQEELASKFHCILKVPLPRWPHSRDTLTVWKRHAFCAI 1035
            TA     LD ++  +KS PKDMARLFDP L DD R EL+ ++    D++  +++W IPDERALRI++H+GP+VEIG+G GYW  LL+ RGVD   +D                +P               GE+     E      E     W  VE+G P+VL     +KR+L LCYPDD+E   ES+   CL+ + G+ VIH+GELFG ++ +     PWGRT+S + Q  LA+ FH +L+VPL  W  S DTLTVWKR   C +
Sbjct:   18 TATCNPYLDFYRTFQKSQPKDMARLFDPDLDDDTREELFNLV---DDKVAAKYSWAIPDERALRIIKHYGPIVEIGAGTGYWGRLLQLRGVDVKCFDL--------------HVP---------------GEEGDDAGEXXXXXXEPERMTWLDVEQGTPEVLSR--FKKRTLLLCYPDDYEDSEESMAEACLNNYTGEYVIHIGELFGHTLCLPE---PWGRTSSPEFQTRLAAVFHKVLQVPLNSWHSSVDTLTVWKRTKTCIV 246          
BLAST of mRNA_L-digitata_M_contig10159.3.2 vs. uniprot
Match: A0A485KIU8_9STRA (Aste57867_7875 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KIU8_9STRA)

HSP 1 Score: 199 bits (507), Expect = 2.190e-55
Identity = 106/263 (40.30%), Postives = 146/263 (55.51%), Query Frame = 1
Query:  262 LDSFQELRKSWPKDMARLFDPALSDDRRAELWEIMCEGGDRLRQRFAWGIPDERALRIVEHFGPVVEIGSGLGYWAMLLRARGVDFNAYD-----KAAGSPDTGGSPPRQRLPQKGSKSGTPAGTDGGGEKKKKLAEAGEDEEEAPSFWSKVEEGGPDVLEEECNEKRSLFLCYPDDFEGETESLGLRCLHAFEGDVVIHVGELFGDSVSMTPGQTPWGRTTSSDCQEELASKFHCILKVPLPRWPHSRDTLTVWKRHAFCAI 1035
            L+ F+  +KS PKDM RLFDP L D+ R  L+ ++    D +  +++W IPDERALR+++H+GP+VEIG+G GYW  LL+ RGVD   +D           D       ++L +K                                 W  V++G P+VL++    KRSL LCYPDD+E   ES+ L CL+ + GD VIH+GELFG ++ +     PWGRT+S D Q  LA+ FH +L+VPL  W  S D LTVWKR   C +
Sbjct:   27 LEFFRSFQKSQPKDMDRLFDPDLDDEVRENLFNLV---DDNIASKYSWAIPDERALRVIKHYGPIVEIGAGTGYWGRLLQLRGVDIKCFDLHVPGDGVSDDDASXXXXXEKLERK--------------------------------TWIHVQKGTPEVLKK--LNKRSLLLCYPDDYEDSEESMALECLNNYTGDTVIHIGELFGHTLCLPE---PWGRTSSPDFQIRLAAVFHKVLQVPLNSWHSSMDALTVWKRTKTCIV 249          
BLAST of mRNA_L-digitata_M_contig10159.3.2 vs. uniprot
Match: A0A067CHL3_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CHL3_SAPPC)

HSP 1 Score: 197 bits (502), Expect = 1.050e-54
Identity = 108/267 (40.45%), Postives = 150/267 (56.18%), Query Frame = 1
Query:  235 TTTAVKIDLLDSFQELRKSWPKDMARLFDPALSDDRRAELWEIMCEGGDRLRQRFAWGIPDERALRIVEHFGPVVEIGSGLGYWAMLLRARGVDFNAYDKAAGSPDTGGSPPRQRLPQKGSKSGTPAGTDGGGEKKKKLAEAGEDEEEAPSFWSKVEEGGPDVLEEECNEKRSLFLCYPDDFEGETESLGLRCLHAFEGDVVIHVGELFGDSVSMTPGQTPWGRTTSSDCQEELASKFHCILKVPLPRWPHSRDTLTVWKRHAFCAI 1035
            T TA     LD +++     PK+MARLFDP L D+ R EL+ ++    D +  +++W IPDERALRI++H+GPVVE+G+G GYW  LL+ RGVD   +D                +P      GT +       K+           E    W  V++G P VL++  + KR+L LCYPDDFE   ES+   CL+ F GD +IH+GE  G +V +     PWGRT++ + Q  L++ FH +L+VPLP W  S DTLTVWKR   C +
Sbjct:   10 TLTATSNPYLDFYRDFEAKQPKEMARLFDPELDDETREELFNLL---DDNVAAKYSWAIPDERALRIIKHYGPVVEMGAGSGYWGRLLQLRGVDVKCFDL--------------HVP------GTASA------KQDSXXXXXXXXAEERMTWLDVQQGTPKVLKK--HSKRTLLLCYPDDFEDSEESMANECLNHFTGDTIIHIGEWLGQTVCLPE---PWGRTSAPEFQTRLSAVFHKVLQVPLPSWHSSIDTLTVWKRTKTCIM 242          
BLAST of mRNA_L-digitata_M_contig10159.3.2 vs. uniprot
Match: A0A6G0WNX8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WNX8_9STRA)

HSP 1 Score: 197 bits (501), Expect = 1.910e-54
Identity = 105/258 (40.70%), Postives = 147/258 (56.98%), Query Frame = 1
Query:  262 LDSFQELRKSWPKDMARLFDPALSDDRRAELWEIMCEGGDRLRQRFAWGIPDERALRIVEHFGPVVEIGSGLGYWAMLLRARGVDFNAYDKAAGSPDTGGSPPRQRLPQKGSKSGTPAGTDGGGEKKKKLAEAGEDEEEAPSFWSKVEEGGPDVLEEECNEKRSLFLCYPDDFEGETESLGLRCLHAFEGDVVIHVGELFGDSVSMTPGQTPWGRTTSSDCQEELASKFHCILKVPLPRWPHSRDTLTVWKRHAFCAI 1035
            L+ F   +K  PK+M RLFDP L D+ R  L+  +    D +  +++W +PDERALRI++H+GP+VE+G+G GYW  LL+ RGVD   +D                +P               GE+K                W  VE+G P+VL++  ++KR+L LCYPDD+E   ES+ L CL+ + GD VIH+GELFG ++ +     PWGRT+S + Q  LA+ FH +L+VPLP W  S DTLTVWKR   C +
Sbjct:   29 LEYFTSFQKKQPKEMDRLFDPDLDDETRETLFNSV---DDSIASKYSWAVPDERALRIIKHYGPIVEMGAGTGYWGRLLQLRGVDIKCFDL--------------HVP---------------GEEKXXXXXXXXX---XXRTWMTVEKGTPEVLKK--HKKRTLMLCYPDDYEDSEESMSLECLNNYSGDTVIHIGELFGHTLCLPE---PWGRTSSPEFQMRLAAVFHKVLQVPLPSWHSSMDTLTVWKRTKTCIV 246          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10159.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JT97_9PHAE2.380e-14869.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFK6_ECTSI2.140e-13562.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1V9YVH9_9STRA3.960e-5842.51Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A024UED4_9STRA4.060e-5842.16Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A1V9YJ57_9STRA3.100e-5740.31Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
W4G0Y3_9STRA8.130e-5743.02Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6A5AE36_9STRA5.190e-5642.11Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A485KIU8_9STRA2.190e-5540.30Aste57867_7875 protein n=1 Tax=Aphanomyces stellat... [more]
A0A067CHL3_SAPPC1.050e-5440.45Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A6G0WNX8_9STRA1.910e-5440.70Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10159contigL-digitata_M_contig10159:1738..7641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LFK6
Model size1954
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue8.03e-139
EggNOG OGs29WS3@1|root,2RXQ6@2759|Eukaryota
Cds size1383
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10159.3.2prot_L-digitata_M_contig10159.3.2Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10159 2204..7536 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406620.4303553-UTR-L-digitata_M_contig10159:1737..22031682406620.4303553-UTR-L-digitata_M_contig10159:1737..2203Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig10159 1738..2203 -
1682406620.4987133-UTR-L-digitata_M_contig10159:7536..76411682406620.4987133-UTR-L-digitata_M_contig10159:7536..7641Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig10159 7537..7641 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406620.441423-CDS-L-digitata_M_contig10159:2203..27281682406620.441423-CDS-L-digitata_M_contig10159:2203..2728Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10159 2204..2728 -
1682406620.4506204-CDS-L-digitata_M_contig10159:3458..35841682406620.4506204-CDS-L-digitata_M_contig10159:3458..3584Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10159 3459..3584 -
1682406620.4595757-CDS-L-digitata_M_contig10159:4108..42461682406620.4595757-CDS-L-digitata_M_contig10159:4108..4246Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10159 4109..4246 -
1682406620.468174-CDS-L-digitata_M_contig10159:5136..53731682406620.468174-CDS-L-digitata_M_contig10159:5136..5373Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10159 5137..5373 -
1682406620.4779818-CDS-L-digitata_M_contig10159:6029..60961682406620.4779818-CDS-L-digitata_M_contig10159:6029..6096Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10159 6030..6096 -
1682406620.487785-CDS-L-digitata_M_contig10159:7246..75361682406620.487785-CDS-L-digitata_M_contig10159:7246..7536Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10159 7247..7536 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10159.3.2

>prot_L-digitata_M_contig10159.3.2 ID=prot_L-digitata_M_contig10159.3.2|Name=mRNA_L-digitata_M_contig10159.3.2|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=461bp
MPSSRNAKRRRKQTAGSTTSDDAGPGTDGIATTNKGGAGAVADTTTAVKI
DLLDSFQELRKSWPKDMARLFDPALSDDRRAELWEIMCEGGDRLRQRFAW
GIPDERALRIVEHFGPVVEIGSGLGYWAMLLRARGVDFNAYDKAAGSPDT
GGSPPRQRLPQKGSKSGTPAGTDGGGEKKKKLAEAGEDEEEAPSFWSKVE
EGGPDVLEEECNEKRSLFLCYPDDFEGETESLGLRCLHAFEGDVVIHVGE
LFGDSVSMTPGQTPWGRTTSSDCQEELASKFHCILKVPLPRWPHSRDTLT
VWKRHAFCAIHYDDDDSEEEEEEGDDESQDEEAGEGKGDAKKRARGKGQA
READQEDSDESVSSAGSGEPAAAHGAEIAGLKDVKCSRGGGQGGGGGSGS
DGGASDDGASDDFGSEEGFPIGMPDLDMYAFLPADEQMSCAQAAPCVRFL
LGARNNMFSC*
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mRNA from alignment at L-digitata_M_contig10159:1738..7641-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10159.3.2 ID=mRNA_L-digitata_M_contig10159.3.2|Name=mRNA_L-digitata_M_contig10159.3.2|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=5904bp|location=Sequence derived from alignment at L-digitata_M_contig10159:1738..7641- (Laminaria digitata LdigPH10_18mv male)
AGCCAGTGAGAGCGTGCCCAACCGTTCTCTCTACCAGGCCACGACAGGCT AGCTGATATAGTGCCTGCAGCTGGCTGGTGTCTGCAATCCAACAACAACG CTGTTATGCCATCGTCGAGAAATGCGAAAAGGCGGAGGAAGCAAACCGCA GGATCCACGACCTCAGACGATGCTGGACCTGGTACTGATGGGATTGCGAC CACCAACAAGGGGGGTGCAGGTGCTGTTGCGGATACGACTACCGCTGTGA AGATAGACCTGCTTGACAGCTTTCAGGAGCTCCGAAAGTCGTGGCCGAAG GACATGGCCAGGCTCTTTGATCCCGCGCTGTCTGACGACCGTCGTGCGGA GCTGTGGGAGATCATGTGTGAGGGAGGTGACAGACTGAGGCAAAGGTAAA GCAAAAGCAAGTGAACGGGGTTGGTTCATTCTATAATACTCTCACAGCTG ACGTTTTTCAATTTTTATAAAATACGACGTACGTCGAACCAATGGACTAC AAGTTCGTAGGGTGCATGTCATACCACCAGACCACCAGACCACCAGTCGT ATACGAGTACCAGTATCAGGTACCCGTGGGTTTGATACCTGGTACATATT ATACGTATGATTCCTGCTACAGCAGTTGTTGTTGTTGTTGTTGTTCTCAC ATGAACTCATCGCCACAACACAATGCAGTCCGTGGTCGCAGGACAGGCTC CAATAACTCTGGAGTGGAAAGAGTATACGTAGGTGTGTGGCGTTGTTCTT TCTAGAGCATGCACGCGGTGGTTATGGCCGGGCCATCCCGGCATTGCACG ATTCCCGGTAATGGTTCAATCGCGGTCGGTTATTCTCTGGTCGAAAGGAT AAGGGTCGTACTTTCCGAGTGGGTGTTCCTGCTTACTTCGAGCCCGAGAC AAAGCAGCCCCACAAGCCAAAGGCAGCTGCAGACTGCTGTACACATGCTG TCCTCCAAAGTTGGATCCCTCTATTAATACTCGTACTCGTATTTAGTATT TAGTCTATTCCGATTTGTCAGCGTGACTCGCAATCGTATAGATGGTGGCT CGCATGTGTGGTTTCTCTCGCAAGAGCAGAAGATGAAAATAGAAAGTAGG TGCTGTGCATGTGCATGTCTCTCGCCGTGCCGGCCGGTAGTGGCCCTGAA AATATGAGAGTGCGAAAGTACTGAGTACCAGTACGAGTCTACGAACGAGA AGAGGAGTAGATTAGCAATTACATTTACGCGTATAATATCATACCTGGTA CAGAGTACTCGTACCTTTTTTTGCGGTACCAGGTACTGGTAAACCTTAAA AAGATGGGTCCGATGCCTGGTACGCACACGGTGTACGGTGTACGGCTCTC TAGCGAGAATCGAACTGACGAATGTCGACCGAACCGCCTCCAAATTGTAC GCAACTCCCCGTGGGCCACCGTCGTAGGTGCCGGTACCGGTGGACTACTG CTGTACATCGTGTCTGCCGTTGGTGTCCTATAAACCTGGCATGTCTTCCC TGTCGGCAACTCTTTTCCTCGCGTGTCCGACTCGTTTTTTGTCAGATTCG CGTGGGGGATCCCTGACGAGCGAGCGCTGCGGATCGTGGAGCACTTCGGG CCCGTCGTCGAAGTGAGTGACGGCACACTTCGCACAGCGAAAACTTTGCA CGCGCACCTTTCCAAGCGCAAGGCACGTCGTGGAAGCCAAAGGAAGGCTA TCAACTCCTTTAAGACTGCACTCCCGTTTGGGGGACAAATTAATTGAAAT TAGAGGCCGATATGTGTTTCTGTACAGTGCAATGATAAAAGGGTTACGTA TAACCCGAGCTATAAAACCCCCGATTGATTGTGAAACTCCGTATATATCT CCGCAGAAGGGCCCAAAGGGGCTTGATCGGCGGAAGAAGTTGCGCACTTG GTCTCTCCACAATAGGGCCCCAAAGAGGTTTGGACGGCGAAGATCAGCTC CGAGCTGAGTTACACACCTCGCCCTTAGCGGCGCCCTTCGACACAGAGCA ATCAAAATGCAGCCCCGTTATTGCTCCGCTCTTGACAGACGCGTGAGCGC TGTCGCAAACACTGTTCGCAAGTTTTTTCTGTTGAGAGAACCGCTGCATT CCCTCCTGCCGCGAGGCTTTATGGAGCGAGCTCACGGCGACCATTTTCCC TCCTGTTACCGCTCCGTAAATCCAAGCTGGCTTGTGTCCGCGCAACGAAC GCTTGACACCGCTGACGGCCTCTCGCACCGCTTGCTGGCCCCGGACTGCT CCCGCCGGCCTCCCGCAGATCGGTAGTGGGCTGGGGTACTGGGCGATGCT GTTACGCGCTCGGGGCGTCGACTTCAACGCGTACGATAAGGCAGCGGGAT CCCCTGACACGGGGGGCTCCCCTCCCCGACAGCGGTTGCCGCAGAAGGGG TCGAAGTCTGGGACTCCCGCCGGGACTGATGGTGGGGGCGAGAAGAAGAA GAAGCTTGCCGAGGCGGGAGAGGACGAGGAAGAGGCGCCGTCGTTCTGGT CGAAGGTGGGTCGTTGGAAATGGTTGGTTGGGTGTCTGATTGGTTGGTTG GTTAATTAGGTGGTTGGTTGGTTGGTTGATTGACTTGTTGGTTGGTTGGT TAGTTTGTTGGTTGGTTGATTGGTTGGTTGATTGGCGGACGTCGTTCGTC ATAGGGCACAAGACCACCACGCTGCTGGAGGAGGTGCTCTCGTGCAGTAG ATGGGTCGTACGAAAGGAGGGGCGGAGGGAAAGGGCGCGGCGTCGCATCG CGAGGAGGTCTCGACGCAAGAGATGGGTGTCGACCAGACGAATACGGGGA AACATGCTCGGTGAATCTCATCACATTCTGCACTTTCTCGGCTTGCGCGG AGGGGCGGCCAACAGCTGGTGCGCTTCTGAGATAGCAACACAAGGACGGC AGAGTTGCACCTTAGCCTTCGACCACAAGGCTGCAAACGGAAACGTCTGA CTCCGTGTCTCCCGCATGCCGTATAACACGGAAGAAAGCACACCCCCCTC AGGTAGCATGTACGGGTGATAAAGTGATGGTGGAAAAACGAAACCAAAAA AAAATCGTTGGGTGTGCTCATGTGGGTGTGTGTGCTATCTAAGGGGGGGG TGCTTTCTTCCGTGTTATACGGTATTTGGCGCTTGGCGAAGTGCTATAGC GCTGACAACTGCTGTCTGTCCGTCCTTCCCACCGCCCGTCCGACCGCCCG TGATTTTTCCGTCGGTACTTCAGGCCAACGTATTGGCTCCTCTCACCGTG CTTTGACTAACAACTGCATGCATCCATATTTCGGGGACAAAGAACTTGGA ACTAGAGTACGATCATGTTTTGCAGTTACCAGGTACACATCAGTAAGGGT TAACCTGACCCATGCGCTCTTGGCTGGCGGGCGACCGATTTGCAGGTTGA GGAGGGCGGCCCCGACGTTCTCGAAGAAGAGTGCAACGAGAAGCGATCGC TATTCTTGTGCTATCCAGACGATTTCGAGGGAGAAACCGAGAGCCTGGGC CTTCGATGTCTGCACGCGTTCGAAGGAGACGTGGTGGGTGTCCTTTTCGG GAGGGGAGGGGGGGGGGAGAGGTGGCCGGGATGGGGCGATGCGGCGAGAT TATCTGCCATTTTTTCAGCGTCCGCTTCGGATAAGGGTGGATAACGTGCA GTCGATCATCGCGATGCAGCGTTCGCGTGTATGATAGCCTTCGGACGTTT TCCGTGTGAGAGGTACTACGAGGCTGTTCATAACGCACAGCTCGTGAGTG GCGACCCCTGCAATAATGCTGCAGGAGTTTCCTCGATATGGTATGTAGCA CGTTTGAAACTTGTGCGCTCCAGGAGGTGGGGCTGCGGCGCCTGACCGAG CCGGGCCACCCATCGTCCCGCATCCTCTTTCTAGATGCTAGATGCGAGCG CTAGATAATATCCTAGCTGGTGCTAAGGATATCTGTAAGTATAAAGGATT GCCGTGCCAATGTTCGATATGTCTCTTGGGTGAAGCTTCCCAGAGTCATG TTACGCGCAAAATGAGTACATGTGAATACGACGTGTGCTTATTCGTCGTA TCCATAGGTCATCCACGTTGGCGAGCTGTTCGGAGACTCCGTGAGCATGA CCCCGGGCCAGACGCCCTGGGGTCGCACAACCTCTAGCGACTGTCAAGAG GAACTGGCGTCTAAGTTTCACTGCATCCTCAAGGTTGGTCCAGAAGAGCG CACGATATACACTGGACACTTTAGAATATTTCCCATGGGCCCTTTGGATC ACTGAACCGCCGGTATTAATCGTGGATTGGATAGATGGGGGGCCCCCTCC TTAGGGTTCGCTTTCAAGATGGGGAGGCGAAATCGGGGACTTGAATATCG GTCTGCGGGGAAAATTTGGGAAGCGCTTTCACACGCGCGCAACGGTTTGT TTTTGTCGATCCAGCTGTGCTCGTAGCTTTTCTGAGTCGACGAGAGCATC GCAGACGGCGGGGCGTTGAAGGTTTTTGCTTATTTTTTCCCCCTTTTTAC GCCTGTCTTGTTGTGGAACTCCGGGCGCTCGAGCAGCCGTCGAGATGATG ATGACTCAATCTCGAATTTCTTCTTCCTGTTGGTTTACCCCTGCTCGTTT TCCTCGGCCTGCTCGCGTTGAAACCAGAGATTTTCACGTGGTGGAGGTGG TTTTAGGAGCGCCTACTGTAGTGCTACCCCGCCACGTATTCTCGATGGAA TAAGAACACCCCACCGGCCCCGCCCCCCGACGCTCATCCGAGCGAGCACG TAAAGTGGCCGGCGGTAGAACTACTGAGGAATCCTGAATCTTGACGCCCC GGCAAGGCACGTATGTAAGAAGGACAAAAAGAAGGACTGCCAGATATTCT TACATGAGACGCCCTGCCCCACCTCTCTCTCTCTGCTGTGTGTGTTTACC GCCCGACCTTAAGGTGCCACTTCCCCGTTGGCCTCACTCTCGAGACACCT TGACCGTGTGGAAACGACACGCGTTTTGCGCGATTCATTACGACGACGAT GATAGCGAGGAGGAGGAAGAGGAGGGGGACGACGAGAGCCAGGATGAGGA AGCAGGGGAGGGAAAAGGGGACGCGAAAAAGAGGGCCAGAGGTAAAGGTC AAGCCCGGGAAGCAGATCAGGAAGATAGCGATGAGAGCGTGTCATCTGCC GGCAGCGGAGAACCCGCAGCGGCGCATGGCGCTGAGATAGCAGGGCTTAA GGACGTAAAATGCTCTCGGGGTGGGGGGCAAGGGGGGGGGGGCGGGAGTG GGTCGGACGGTGGGGCATCGGACGATGGCGCATCCGACGATTTCGGGTCT GAGGAAGGGTTTCCGATAGGAATGCCTGACCTCGACATGTACGCCTTTTT GCCGGCGGATGAGCAGATGTCGTGCGCGCAGGCGGCACCTTGCGTGAGGT TCCTGCTCGGTGCGCGCAATAACATGTTTTCTTGTTGATAGGTACCAGGT AGATGCTAAGCTTTGGGGTACGTGCGGCTTACATCAGTGTGAGACGAGTG GTTGCCGTTGCTGGAAGCGCAACGTAAAGGGAGTAAGAAGGGTTGATCGT TCAGCTGCTCTATTTTTTTTTCTTGTTTTTTTTCCATCCCATTTATTATC TTCGCCCTTCTTTTCTCGCTCTCTCCTATTAATAGCCGTAACTCAGATCC GGGGTCACAAAGCAGGCCCTTTCTCTCCCCTCCCCACTACGGTACGCGCC TTCATTCTTATCGCGAGAAGGCTTTTAAATAGCAGTATAGATGCTATTCT AGTAAGAGAGCTGTGCTTTTCGCCTGCAAGCATGAAACGGGCAACCACTA CTTCTGTCTTGAGTCAAGACCAGACGATACGAACGTGTCATTGTGTGCCT AAAACATCACCGATCTTGGACGCCGCGTTTGTTTGGGGTACAGTCATATT TCTT
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Coding sequence (CDS) from alignment at L-digitata_M_contig10159:1738..7641-

>mRNA_L-digitata_M_contig10159.3.2 ID=mRNA_L-digitata_M_contig10159.3.2|Name=mRNA_L-digitata_M_contig10159.3.2|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=1383bp|location=Sequence derived from alignment at L-digitata_M_contig10159:1738..7641- (Laminaria digitata LdigPH10_18mv male)
ATGCCATCGTCGAGAAATGCGAAAAGGCGGAGGAAGCAAACCGCAGGATC
CACGACCTCAGACGATGCTGGACCTGGTACTGATGGGATTGCGACCACCA
ACAAGGGGGGTGCAGGTGCTGTTGCGGATACGACTACCGCTGTGAAGATA
GACCTGCTTGACAGCTTTCAGGAGCTCCGAAAGTCGTGGCCGAAGGACAT
GGCCAGGCTCTTTGATCCCGCGCTGTCTGACGACCGTCGTGCGGAGCTGT
GGGAGATCATGTGTGAGGGAGGTGACAGACTGAGGCAAAGATTCGCGTGG
GGGATCCCTGACGAGCGAGCGCTGCGGATCGTGGAGCACTTCGGGCCCGT
CGTCGAAATCGGTAGTGGGCTGGGGTACTGGGCGATGCTGTTACGCGCTC
GGGGCGTCGACTTCAACGCGTACGATAAGGCAGCGGGATCCCCTGACACG
GGGGGCTCCCCTCCCCGACAGCGGTTGCCGCAGAAGGGGTCGAAGTCTGG
GACTCCCGCCGGGACTGATGGTGGGGGCGAGAAGAAGAAGAAGCTTGCCG
AGGCGGGAGAGGACGAGGAAGAGGCGCCGTCGTTCTGGTCGAAGGTTGAG
GAGGGCGGCCCCGACGTTCTCGAAGAAGAGTGCAACGAGAAGCGATCGCT
ATTCTTGTGCTATCCAGACGATTTCGAGGGAGAAACCGAGAGCCTGGGCC
TTCGATGTCTGCACGCGTTCGAAGGAGACGTGGTCATCCACGTTGGCGAG
CTGTTCGGAGACTCCGTGAGCATGACCCCGGGCCAGACGCCCTGGGGTCG
CACAACCTCTAGCGACTGTCAAGAGGAACTGGCGTCTAAGTTTCACTGCA
TCCTCAAGGTGCCACTTCCCCGTTGGCCTCACTCTCGAGACACCTTGACC
GTGTGGAAACGACACGCGTTTTGCGCGATTCATTACGACGACGATGATAG
CGAGGAGGAGGAAGAGGAGGGGGACGACGAGAGCCAGGATGAGGAAGCAG
GGGAGGGAAAAGGGGACGCGAAAAAGAGGGCCAGAGGTAAAGGTCAAGCC
CGGGAAGCAGATCAGGAAGATAGCGATGAGAGCGTGTCATCTGCCGGCAG
CGGAGAACCCGCAGCGGCGCATGGCGCTGAGATAGCAGGGCTTAAGGACG
TAAAATGCTCTCGGGGTGGGGGGCAAGGGGGGGGGGGCGGGAGTGGGTCG
GACGGTGGGGCATCGGACGATGGCGCATCCGACGATTTCGGGTCTGAGGA
AGGGTTTCCGATAGGAATGCCTGACCTCGACATGTACGCCTTTTTGCCGG
CGGATGAGCAGATGTCGTGCGCGCAGGCGGCACCTTGCGTGAGGTTCCTG
CTCGGTGCGCGCAATAACATGTTTTCTTGTTGA
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