mRNA_L-digitata_M_contig99762.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99762.1.1
Unique NamemRNA_L-digitata_M_contig99762.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig99762.1.1 vs. uniprot
Match: A0A7X7L185_9DELT (UDP-glucose 6-dehydrogenase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7X7L185_9DELT)

HSP 1 Score: 352 bits (902), Expect = 3.590e-117
Identity = 168/266 (63.16%), Postives = 215/266 (80.83%), Query Frame = 1
Query:    1 MDLAVIGTGYVGLVAGTCFAEMGHNVVCIDRDEEKIRILESGGVPIYEPRLKELIAHNVQKERLKFSTELAPNVADAEVIFIAVGTPEDPEGRADTSAVKAVAKAIGEAIKGPTLVCTKSTVPVGTAQVIRDILAEVTDIPVDVVSNPEFMKEGAAIDDFMKPDRIVIGTESEVAREVMTDLYAPFNRTSNRIVFMDTPSAEMTKYVSNCMLATRISFMNEIAGLCERVGADVNKVRMGVGSDPRIGSSFLFPGVGYGGSCFPKDV 798
            MD+A++GTGYVGLVAG CFAE G++V+C+D D++K+ +L  GG+PIYEP L++++  N++ +RL F+T L   V  ++VIFIAVGTP+D +G AD S V A A++IG ++ GP +V  KSTVP+GTA  +R  + E T  PV+VVSNPEF+KEGAAIDDFMKPDR+V+G  SE A +VM +LYAPF RT+N I+ MD PSAEMTKY +N MLATRISF+NEIA LCE+VGAD+N VR+G+G+D RIG SFLFPGVGYGGSCFPKDV
Sbjct:    1 MDIAIVGTGYVGLVAGACFAETGNDVICVDIDQKKVEMLSQGGIPIYEPGLEDIVKRNLKNKRLSFTTSLQEAVQKSDVIFIAVGTPQDEDGAADLSHVLAAAESIGRSMNGPKIVVDKSTVPIGTAFKVRRTIMEQTQHPVEVVSNPEFLKEGAAIDDFMKPDRVVVGVSSEAAAKVMRELYAPFVRTNNPILVMDVPSAEMTKYAANAMLATRISFVNEIANLCEKVGADINSVRIGIGTDTRIGMSFLFPGVGYGGSCFPKDV 266          
BLAST of mRNA_L-digitata_M_contig99762.1.1 vs. uniprot
Match: A0A3D1R5R8_9DELT (UDP-glucose 6-dehydrogenase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A3D1R5R8_9DELT)

HSP 1 Score: 349 bits (896), Expect = 1.980e-116
Identity = 179/266 (67.29%), Postives = 212/266 (79.70%), Query Frame = 1
Query:    1 MDLAVIGTGYVGLVAGTCFAEMGHNVVCIDRDEEKIRILESGGVPIYEPRLKELIAHNVQKERLKFSTELAPNVADAEVIFIAVGTPEDPEGRADTSAVKAVAKAIGEAIKGPTLVCTKSTVPVGTAQVIRDILAEVTDIPVDVVSNPEFMKEGAAIDDFMKPDRIVIGTESEVAREVMTDLYAPFNRTSNRIVFMDTPSAEMTKYVSNCMLATRISFMNEIAGLCERVGADVNKVRMGVGSDPRIGSSFLFPGVGYGGSCFPKDV 798
            M ++VIG+GYVGLVAGTCFA+ G++VVCIDRD  KI +L SGG+PIYEP L+EL+  NV+  RL FST+L   VA A+V+FIAVGTP D  G AD   V A A+ IG+A+   T+V  KSTVPVGTA  +R+ + +VTD+  DVVSNPEF+KEGAAIDDFMKPDR+VIG ESE AR++M +LYAPF RT N I+FMD  SAE+TKY SN MLA RISFMNEIA LCERVGADV+ VR G+G+D RIG  FLFPGVGYGGSCFPKDV
Sbjct:    1 MKISVIGSGYVGLVAGTCFADSGNDVVCIDRDAAKIELLNSGGIPIYEPGLEELLKRNVKDGRLTFSTDLKSAVAGADVVFIAVGTPPDENGEADLQHVLAAAREIGKALTRYTVVVDKSTVPVGTADKVREEIRKVTDVEFDVVSNPEFLKEGAAIDDFMKPDRVVIGVESERARKIMGELYAPFVRTENPILFMDPRSAELTKYASNAMLAVRISFMNEIAQLCERVGADVDLVRKGMGADRRIGYPFLFPGVGYGGSCFPKDV 266          
BLAST of mRNA_L-digitata_M_contig99762.1.1 vs. uniprot
Match: A0A7C7YR90_9BACT (UDP-glucose 6-dehydrogenase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C7YR90_9BACT)

HSP 1 Score: 346 bits (888), Expect = 4.160e-115
Identity = 169/266 (63.53%), Postives = 211/266 (79.32%), Query Frame = 1
Query:    1 MDLAVIGTGYVGLVAGTCFAEMGHNVVCIDRDEEKIRILESGGVPIYEPRLKELIAHNVQKERLKFSTELAPNVADAEVIFIAVGTPEDPEGRADTSAVKAVAKAIGEAIKGPTLVCTKSTVPVGTAQVIRDILAEVTDIPVDVVSNPEFMKEGAAIDDFMKPDRIVIGTESEVAREVMTDLYAPFNRTSNRIVFMDTPSAEMTKYVSNCMLATRISFMNEIAGLCERVGADVNKVRMGVGSDPRIGSSFLFPGVGYGGSCFPKDV 798
            M + ++GTGYVGLV GTCF+E G++V+C+DRD  KI  L  G +PIYEP L+EL+A NV+  RL F+T+L  ++A+AEV+FIAVGTP+  +G  D SAV+ VA  IG A+ GP +V  KSTVPVGTA V+RD++ E +  P++VVSNPEF+KEGAAIDDFMKPDR+VIGT+ + A ++M DLY+PF RT   ++ MD  SAEMTKY SN MLAT+ISFMN+IA LCE VGADV+KVR G+GSD RIG  FLFPGVGYGGSCFPKDV
Sbjct:    1 MRITIVGTGYVGLVTGTCFSESGNDVICVDRDAAKIESLREGHIPIYEPGLEELVARNVKAGRLSFTTDLKSSIAEAEVVFIAVGTPQGEDGSCDLSAVRTVATEIGRAMVGPMVVVNKSTVPVGTAVVVRDLIREASAHPIEVVSNPEFLKEGAAIDDFMKPDRVVIGTDDDGAADLMRDLYSPFVRTGKPLLVMDPASAEMTKYASNAMLATKISFMNDIARLCESVGADVSKVRQGMGSDQRIGPHFLFPGVGYGGSCFPKDV 266          
BLAST of mRNA_L-digitata_M_contig99762.1.1 vs. uniprot
Match: A0A0G2ZFW2_9DELT (UDP-glucose 6-dehydrogenase n=11 Tax=Archangiaceae TaxID=39 RepID=A0A0G2ZFW2_9DELT)

HSP 1 Score: 346 bits (887), Expect = 4.570e-115
Identity = 173/266 (65.04%), Postives = 214/266 (80.45%), Query Frame = 1
Query:    1 MDLAVIGTGYVGLVAGTCFAEMGHNVVCIDRDEEKIRILESGGVPIYEPRLKELIAHNVQKERLKFSTELAPNVADAEVIFIAVGTPEDPEGRADTSAVKAVAKAIGEAIKGPTLVCTKSTVPVGTAQVIRDILAEVTDIPVDVVSNPEFMKEGAAIDDFMKPDRIVIGTESEVAREVMTDLYAPFNRTSNRIVFMDTPSAEMTKYVSNCMLATRISFMNEIAGLCERVGADVNKVRMGVGSDPRIGSSFLFPGVGYGGSCFPKDV 798
            M +A+IGTGYVGLVAGTCFA+ G++VVC+D D  KI  L++G +PIYEP L+ELI  N + +RL F+TELAP VA ++V+FIAVGTPE   G AD   V A A+ +G A++  T+V  KSTVPVGTA  +R++LA V+++  DVVSNPEF+KEGAA+DDF+KPDR+VIG ESE AR+VM  LYAPF RT N I++MDT SAE+TKY +N MLATRISFMN++A LCERVGADV+ VR G+G+D RIG  FLFPGVGYGGSCFPKDV
Sbjct:    1 MHIAIIGTGYVGLVAGTCFADSGNDVVCVDIDARKIAQLQAGEIPIYEPGLEELIRKNTRDQRLSFTTELAPAVARSQVVFIAVGTPEGESGEADLQYVLAAAEQVGRAMRQYTVVVDKSTVPVGTADKVREVLARVSEVEFDVVSNPEFLKEGAALDDFLKPDRVVIGAESERARKVMGQLYAPFVRTENPILYMDTRSAELTKYAANAMLATRISFMNDMAALCERVGADVDFVRKGMGADKRIGYPFLFPGVGYGGSCFPKDV 266          
BLAST of mRNA_L-digitata_M_contig99762.1.1 vs. uniprot
Match: H8MLK6_CORCM (UDP-glucose 6-dehydrogenase n=29 Tax=Myxococcaceae TaxID=31 RepID=H8MLK6_CORCM)

HSP 1 Score: 344 bits (883), Expect = 1.900e-114
Identity = 171/266 (64.29%), Postives = 213/266 (80.08%), Query Frame = 1
Query:    1 MDLAVIGTGYVGLVAGTCFAEMGHNVVCIDRDEEKIRILESGGVPIYEPRLKELIAHNVQKERLKFSTELAPNVADAEVIFIAVGTPEDPEGRADTSAVKAVAKAIGEAIKGPTLVCTKSTVPVGTAQVIRDILAEVTDIPVDVVSNPEFMKEGAAIDDFMKPDRIVIGTESEVAREVMTDLYAPFNRTSNRIVFMDTPSAEMTKYVSNCMLATRISFMNEIAGLCERVGADVNKVRMGVGSDPRIGSSFLFPGVGYGGSCFPKDV 798
            M +A+IG+GYVGLVAGTCFA+ G++V C+D DE KIR+L+ G VPIYEP L+ELI  NV+++RL F+T L   V +A+ +FIAVGTPE   G AD   V A A+A+G A+K  T+V  KSTVPVGTA  +R+ +A+VTD+  DVVSNPEF+KEGAA+DDF KPDR+VIG ++E AR +M +LYAPF RT N I+FMDT SAE+TKY +N MLATRISFMN+I+ LCE+VGADV+ VR G+G+D RIG  FLFPGVGYGGSCFPKDV
Sbjct:    1 MRIAIIGSGYVGLVAGTCFADSGNDVACVDIDERKIRMLQDGQVPIYEPGLEELIKKNVKEKRLTFTTNLTEGVQNAQAVFIAVGTPEGESGEADLQYVLAAAQAVGRAMKQYTVVVDKSTVPVGTADKVREAIAKVTDVEFDVVSNPEFLKEGAALDDFFKPDRVVIGADTERARNIMGELYAPFVRTENPILFMDTRSAELTKYAANAMLATRISFMNDISALCEKVGADVDFVRKGLGADKRIGYPFLFPGVGYGGSCFPKDV 266          
BLAST of mRNA_L-digitata_M_contig99762.1.1 vs. uniprot
Match: UPI001CCAA6F8 (UDP-glucose/GDP-mannose dehydrogenase family protein n=1 Tax=Hyalangium sp. H56D21 TaxID=2861190 RepID=UPI001CCAA6F8)

HSP 1 Score: 343 bits (879), Expect = 7.670e-114
Identity = 174/266 (65.41%), Postives = 211/266 (79.32%), Query Frame = 1
Query:    1 MDLAVIGTGYVGLVAGTCFAEMGHNVVCIDRDEEKIRILESGGVPIYEPRLKELIAHNVQKERLKFSTELAPNVADAEVIFIAVGTPEDPEGRADTSAVKAVAKAIGEAIKGPTLVCTKSTVPVGTAQVIRDILAEVTDIPVDVVSNPEFMKEGAAIDDFMKPDRIVIGTESEVAREVMTDLYAPFNRTSNRIVFMDTPSAEMTKYVSNCMLATRISFMNEIAGLCERVGADVNKVRMGVGSDPRIGSSFLFPGVGYGGSCFPKDV 798
            M +AVIGTGYVGLV G CFA+ G++VVC+D + EKIR L +G VPIYEP L+EL+  NV++ RL F+TELA  V +++V+FIAVGTPE   G AD   V + A+AIG A+K  TL+  KSTVPVGTA+ +R  +A VT +  DVVSNPEF+KEGAAI+DF +PDR+VIGT SE AR VM DLY+PF RT + ++FMDT SAE+TKY +N MLATRISFMN+IA LCERVGADV  VR G+G+D RIG SFLFPGVGYGGSCFPKDV
Sbjct:    1 MKIAVIGTGYVGLVVGACFADSGNDVVCVDINAEKIRQLRAGEVPIYEPGLEELLVRNVREGRLSFTTELASAVGNSQVVFIAVGTPEGENGDADLRHVLSAAEAIGRALKQYTLIVDKSTVPVGTAERVRRTIASVTQVAFDVVSNPEFLKEGAAIEDFTRPDRVVIGTNSEKARTVMADLYSPFMRTGSPLLFMDTASAELTKYTANAMLATRISFMNDIACLCERVGADVEMVRKGIGTDKRIGHSFLFPGVGYGGSCFPKDV 266          
BLAST of mRNA_L-digitata_M_contig99762.1.1 vs. uniprot
Match: A0A3M0ZYY8_9BACT (UDP-glucose 6-dehydrogenase (Fragment) n=1 Tax=Candidatus Dadabacteria bacterium TaxID=2080303 RepID=A0A3M0ZYY8_9BACT)

HSP 1 Score: 338 bits (868), Expect = 5.330e-113
Identity = 166/266 (62.41%), Postives = 209/266 (78.57%), Query Frame = 1
Query:    1 MDLAVIGTGYVGLVAGTCFAEMGHNVVCIDRDEEKIRILESGGVPIYEPRLKELIAHNVQKERLKFSTELAPNVADAEVIFIAVGTPEDPEGRADTSAVKAVAKAIGEAIKGPTLVCTKSTVPVGTAQVIRDILAEVTDIPVDVVSNPEFMKEGAAIDDFMKPDRIVIGTESEVAREVMTDLYAPFNRTSNRIVFMDTPSAEMTKYVSNCMLATRISFMNEIAGLCERVGADVNKVRMGVGSDPRIGSSFLFPGVGYGGSCFPKDV 798
            M LAVIGTGYVGLVAG CFA+ G++V+C+D DE+KI+ L  G +PIYEP L  ++  N++ +RL F+T L+  V ++ VIFIAVGTP+D +G AD S V  VA+ I EA+ G  ++  KSTVPVGTA+++R  + + T    DVVSNPEF+KEGAAIDDF+KPDR+V+G +SE A  VM +LYAPF RT+  I+ MD PSAE+TKY +N MLA RISFMNEIA LCE+VGADV+KVR+G+GSD RIG SFLFPG+GYGGSCFPKDV
Sbjct:    1 MKLAVIGTGYVGLVAGACFADTGNDVICVDIDEKKIQALRKGEIPIYEPGLDHIVERNIKSQRLHFTTSLSNAVKESRVIFIAVGTPQDEDGSADLSHVLKVAEEIAEAMNGYKIIVNKSTVPVGTAELVRKTIRDRTSHSFDVVSNPEFLKEGAAIDDFLKPDRVVVGVDSEEAERVMKELYAPFVRTNKPIIVMDIPSAELTKYAANAMLAARISFMNEIANLCEKVGADVDKVRIGIGSDSRIGMSFLFPGIGYGGSCFPKDV 266          
BLAST of mRNA_L-digitata_M_contig99762.1.1 vs. uniprot
Match: A0A511SU09_MYXFU (UDP-glucose 6-dehydrogenase n=31 Tax=Myxococcaceae TaxID=31 RepID=A0A511SU09_MYXFU)

HSP 1 Score: 340 bits (871), Expect = 1.250e-112
Identity = 171/266 (64.29%), Postives = 214/266 (80.45%), Query Frame = 1
Query:    1 MDLAVIGTGYVGLVAGTCFAEMGHNVVCIDRDEEKIRILESGGVPIYEPRLKELIAHNVQKERLKFSTELAPNVADAEVIFIAVGTPEDPEGRADTSAVKAVAKAIGEAIKGPTLVCTKSTVPVGTAQVIRDILAEVTDIPVDVVSNPEFMKEGAAIDDFMKPDRIVIGTESEVAREVMTDLYAPFNRTSNRIVFMDTPSAEMTKYVSNCMLATRISFMNEIAGLCERVGADVNKVRMGVGSDPRIGSSFLFPGVGYGGSCFPKDV 798
            M +A+IGTGYVGLVAGTCFA+ G++V C+D DE KIR+L++G VPIYEP L+ELI  NV+++RL F+ +L   V++A V+FIAVGTPE   G AD   V A A+ IG+A+K  T+V  KSTVPVGTA  +R+ + +VT +  DVVSNPEF+KEGAA+DDF+KPDR+VIG +SE  R+VM +LYAPF RT N ++FMDT SAE+TKY +N MLATRISFMN+I+ LCE+VGADV+ VR G+GSD RIG  FLFPGVGYGGSCFPKDV
Sbjct:    1 MRIAIIGTGYVGLVAGTCFADSGNDVTCVDIDERKIRMLQAGEVPIYEPGLEELIKKNVREKRLFFTRDLPEAVSNAHVVFIAVGTPEGETGDADLQYVLAAAEQIGKAMKQYTVVVDKSTVPVGTADKVREAIRKVTSVEFDVVSNPEFLKEGAALDDFLKPDRVVIGVDSERGRKVMGELYAPFVRTENPVLFMDTRSAELTKYAANAMLATRISFMNDISALCEKVGADVDFVRKGLGSDKRIGYPFLFPGVGYGGSCFPKDV 266          
BLAST of mRNA_L-digitata_M_contig99762.1.1 vs. uniprot
Match: A0A6I2GYB2_9DELT (UDP-glucose 6-dehydrogenase n=1 Tax=Aggregicoccus sp. 17bor-14 TaxID=2583808 RepID=A0A6I2GYB2_9DELT)

HSP 1 Score: 337 bits (863), Expect = 1.960e-111
Identity = 171/266 (64.29%), Postives = 211/266 (79.32%), Query Frame = 1
Query:    1 MDLAVIGTGYVGLVAGTCFAEMGHNVVCIDRDEEKIRILESGGVPIYEPRLKELIAHNVQKERLKFSTELAPNVADAEVIFIAVGTPEDPEGRADTSAVKAVAKAIGEAIKGPTLVCTKSTVPVGTAQVIRDILAEVTDIPVDVVSNPEFMKEGAAIDDFMKPDRIVIGTESEVAREVMTDLYAPFNRTSNRIVFMDTPSAEMTKYVSNCMLATRISFMNEIAGLCERVGADVNKVRMGVGSDPRIGSSFLFPGVGYGGSCFPKDV 798
            M ++VIGTGYVGLVAGTC A+ G++V C+D D  KI  L +G VPIYEP L+ELI HNV++ERL F+T+LA  VA ++V+FIAVGTPE  +G AD + V   A+ +G A+ G T+V  KSTVPVGTA+ +R+ +  VT    DVVSNPEFMKEGAA++DF+KPDR+VIG +SE A +VM +LYAPF RT N ++FMDT SAE+TKY +N MLATRISFMN+IA LCE+VGADV+ VR G+GSD RIG  FLFPGVGYGGSCFPKDV
Sbjct:    1 MKISVIGTGYVGLVAGTCLADSGNDVACVDIDAGKIARLNAGEVPIYEPGLEELIRHNVKEERLSFTTDLASAVARSQVVFIAVGTPEGEDGEADLTYVLRAAEQVGRAMTGYTVVVDKSTVPVGTAKRVREAIRAVTKHDFDVVSNPEFMKEGAALEDFLKPDRVVIGADSERAAKVMGELYAPFVRTENPVLFMDTASAELTKYAANAMLATRISFMNDIAALCEKVGADVDFVRKGLGSDSRIGYPFLFPGVGYGGSCFPKDV 266          
BLAST of mRNA_L-digitata_M_contig99762.1.1 vs. uniprot
Match: A0A2M7SL08_9DELT (UDP-glucose 6-dehydrogenase n=3 Tax=Bacteria TaxID=2 RepID=A0A2M7SL08_9DELT)

HSP 1 Score: 336 bits (861), Expect = 5.550e-111
Identity = 162/266 (60.90%), Postives = 211/266 (79.32%), Query Frame = 1
Query:    1 MDLAVIGTGYVGLVAGTCFAEMGHNVVCIDRDEEKIRILESGGVPIYEPRLKELIAHNVQKERLKFSTELAPNVADAEVIFIAVGTPEDPEGRADTSAVKAVAKAIGEAIKGPTLVCTKSTVPVGTAQVIRDILAEVTDIPVDVVSNPEFMKEGAAIDDFMKPDRIVIGTESEVAREVMTDLYAPFNRTSNRIVFMDTPSAEMTKYVSNCMLATRISFMNEIAGLCERVGADVNKVRMGVGSDPRIGSSFLFPGVGYGGSCFPKDV 798
            M + +IGTGYVGLVAG CFAE G++V+C+D+D +KI  L+ G VPIYEP L+EL+  N +KERL+F+T L   V ++ +IFIAVGTP+D +G AD + V  VA  IG+A+ G  ++ TKSTVPVGT   +RD + + T+ P +V SNPEF+KEGAA++DFMKPDRI+IGT+++ A ++M +LY+PF RT N I+ MD  SAEMTKY +N MLATR+SFMNE+A LCE+VGAD++ VR G+G+DPRIG SFLFPGVGYGGSCFPKDV
Sbjct:    1 MKICIIGTGYVGLVAGVCFAENGNDVICVDKDSKKIEGLKRGKVPIYEPGLEELLKRNTKKERLQFTTNLKKAVKESFIIFIAVGTPQDDDGSADLNHVLEVAALIGKAMNGYKIIATKSTVPVGTTNRVRDAIGKETEHPFNVASNPEFLKEGAAVNDFMKPDRIIIGTDNQEAADIMKELYSPFVRTGNPILIMDIESAEMTKYAANAMLATRVSFMNELANLCEKVGADISDVRKGMGTDPRIGYSFLFPGVGYGGSCFPKDV 266          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99762.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X7L185_9DELT3.590e-11763.16UDP-glucose 6-dehydrogenase n=1 Tax=Deltaproteobac... [more]
A0A3D1R5R8_9DELT1.980e-11667.29UDP-glucose 6-dehydrogenase n=1 Tax=Myxococcales b... [more]
A0A7C7YR90_9BACT4.160e-11563.53UDP-glucose 6-dehydrogenase n=1 Tax=Planctomycetes... [more]
A0A0G2ZFW2_9DELT4.570e-11565.04UDP-glucose 6-dehydrogenase n=11 Tax=Archangiaceae... [more]
H8MLK6_CORCM1.900e-11464.29UDP-glucose 6-dehydrogenase n=29 Tax=Myxococcaceae... [more]
UPI001CCAA6F87.670e-11465.41UDP-glucose/GDP-mannose dehydrogenase family prote... [more]
A0A3M0ZYY8_9BACT5.330e-11362.41UDP-glucose 6-dehydrogenase (Fragment) n=1 Tax=Can... [more]
A0A511SU09_MYXFU1.250e-11264.29UDP-glucose 6-dehydrogenase n=31 Tax=Myxococcaceae... [more]
A0A6I2GYB2_9DELT1.960e-11164.29UDP-glucose 6-dehydrogenase n=1 Tax=Aggregicoccus ... [more]
A0A2M7SL08_9DELT5.550e-11160.90UDP-glucose 6-dehydrogenase n=3 Tax=Bacteria TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99762contigL-digitata_M_contig99762:4..801 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog246197.MXAN_1048
Preferred nameugd
PFAMsUDPG_MGDP_dh,UDPG_MGDP_dh_C,UDPG_MGDP_dh_N
Model size798
Max annot lvl28221|Deltaproteobacteria
KEGG rclassRC00291
KEGG koko:K00012
KEGG ReactionR00286
KEGG Pathwayko00040,ko00053,ko00520,ko01100,map00040,map00053,map00520,map01100
KEGG ModuleM00014,M00129,M00361,M00362
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.86e-116
EggNOG OGsCOG1004@1|root,COG1004@2|Bacteria,1MW5U@1224|Proteobacteria,42MDV@68525|delta/epsilon subdivisions,2WJ3T@28221|Deltaproteobacteria
EC1.1.1.22
DescriptionBelongs to the UDP-glucose GDP-mannose dehydrogenase family
Cds size798
COG categoryM
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408657.7252107-CDS-L-digitata_M_contig99762:3..8011682408657.7252107-CDS-L-digitata_M_contig99762:3..801Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99762 4..801 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99762.1.1prot_L-digitata_M_contig99762.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99762 4..801 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99762.1.1

>prot_L-digitata_M_contig99762.1.1 ID=prot_L-digitata_M_contig99762.1.1|Name=mRNA_L-digitata_M_contig99762.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=266bp
MDLAVIGTGYVGLVAGTCFAEMGHNVVCIDRDEEKIRILESGGVPIYEPR
LKELIAHNVQKERLKFSTELAPNVADAEVIFIAVGTPEDPEGRADTSAVK
AVAKAIGEAIKGPTLVCTKSTVPVGTAQVIRDILAEVTDIPVDVVSNPEF
MKEGAAIDDFMKPDRIVIGTESEVAREVMTDLYAPFNRTSNRIVFMDTPS
AEMTKYVSNCMLATRISFMNEIAGLCERVGADVNKVRMGVGSDPRIGSSF
LFPGVGYGGSCFPKDV
back to top

mRNA from alignment at L-digitata_M_contig99762:4..801-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99762.1.1 ID=mRNA_L-digitata_M_contig99762.1.1|Name=mRNA_L-digitata_M_contig99762.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=798bp|location=Sequence derived from alignment at L-digitata_M_contig99762:4..801- (Laminaria digitata LdigPH10_18mv male)
ATGGATTTGGCAGTCATCGGAACTGGATACGTTGGCCTCGTTGCCGGCAC TTGCTTCGCCGAAATGGGACACAACGTGGTGTGCATTGACCGGGATGAGG AGAAGATCCGCATCCTAGAGTCGGGCGGCGTGCCCATCTATGAGCCGCGC CTCAAAGAGCTGATCGCACATAACGTGCAAAAAGAGCGGCTGAAGTTCAG CACGGAGTTGGCGCCCAATGTCGCCGACGCCGAGGTGATCTTCATCGCCG TGGGCACCCCTGAGGACCCCGAGGGTCGCGCGGATACCTCCGCGGTCAAG GCCGTGGCCAAGGCGATCGGTGAAGCCATCAAGGGCCCCACCTTGGTCTG CACCAAGAGCACGGTGCCCGTCGGCACGGCTCAGGTGATCCGCGACATCC TCGCGGAGGTCACCGACATCCCCGTCGATGTGGTCTCCAACCCCGAGTTC ATGAAGGAGGGCGCCGCCATCGACGACTTCATGAAGCCGGACCGCATCGT GATCGGAACGGAAAGCGAAGTTGCGCGAGAGGTCATGACCGACCTGTACG CGCCCTTCAACCGCACCTCGAACCGCATCGTATTCATGGATACGCCCAGC GCCGAGATGACGAAGTACGTGTCCAACTGCATGCTGGCCACCCGCATCTC GTTCATGAACGAGATCGCTGGGCTGTGCGAGCGCGTGGGCGCCGACGTCA ACAAGGTGCGCATGGGCGTGGGCTCGGACCCCCGTATTGGGTCCTCGTTC CTCTTCCCTGGCGTGGGCTACGGCGGCAGCTGCTTCCCCAAGGACGTC
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig99762:4..801-

>mRNA_L-digitata_M_contig99762.1.1 ID=mRNA_L-digitata_M_contig99762.1.1|Name=mRNA_L-digitata_M_contig99762.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=798bp|location=Sequence derived from alignment at L-digitata_M_contig99762:4..801- (Laminaria digitata LdigPH10_18mv male)
ATGGATTTGGCAGTCATCGGAACTGGATACGTTGGCCTCGTTGCCGGCAC
TTGCTTCGCCGAAATGGGACACAACGTGGTGTGCATTGACCGGGATGAGG
AGAAGATCCGCATCCTAGAGTCGGGCGGCGTGCCCATCTATGAGCCGCGC
CTCAAAGAGCTGATCGCACATAACGTGCAAAAAGAGCGGCTGAAGTTCAG
CACGGAGTTGGCGCCCAATGTCGCCGACGCCGAGGTGATCTTCATCGCCG
TGGGCACCCCTGAGGACCCCGAGGGTCGCGCGGATACCTCCGCGGTCAAG
GCCGTGGCCAAGGCGATCGGTGAAGCCATCAAGGGCCCCACCTTGGTCTG
CACCAAGAGCACGGTGCCCGTCGGCACGGCTCAGGTGATCCGCGACATCC
TCGCGGAGGTCACCGACATCCCCGTCGATGTGGTCTCCAACCCCGAGTTC
ATGAAGGAGGGCGCCGCCATCGACGACTTCATGAAGCCGGACCGCATCGT
GATCGGAACGGAAAGCGAAGTTGCGCGAGAGGTCATGACCGACCTGTACG
CGCCCTTCAACCGCACCTCGAACCGCATCGTATTCATGGATACGCCCAGC
GCCGAGATGACGAAGTACGTGTCCAACTGCATGCTGGCCACCCGCATCTC
GTTCATGAACGAGATCGCTGGGCTGTGCGAGCGCGTGGGCGCCGACGTCA
ACAAGGTGCGCATGGGCGTGGGCTCGGACCCCCGTATTGGGTCCTCGTTC
CTCTTCCCTGGCGTGGGCTACGGCGGCAGCTGCTTCCCCAAGGACGTC
back to top