mRNA_L-digitata_M_contig9969.4.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig9969.4.1
Unique NamemRNA_L-digitata_M_contig9969.4.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig9969.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig9969contigL-digitata_M_contig9969:4375..5280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size906
Hectar predicted targeting categoryother localisation
Exons1
Cds size552
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408656.3561804-UTR-L-digitata_M_contig9969:4374..45411682408656.3561804-UTR-L-digitata_M_contig9969:4374..4541Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig9969 4375..4541 -
1682408656.3813663-UTR-L-digitata_M_contig9969:5093..52801682408656.3813663-UTR-L-digitata_M_contig9969:5093..5280Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig9969 5094..5280 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408656.3691576-CDS-L-digitata_M_contig9969:4541..50931682408656.3691576-CDS-L-digitata_M_contig9969:4541..5093Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig9969 4542..5093 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig9969.4.1prot_L-digitata_M_contig9969.4.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig9969 4542..5093 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig9969.4.1

>prot_L-digitata_M_contig9969.4.1 ID=prot_L-digitata_M_contig9969.4.1|Name=mRNA_L-digitata_M_contig9969.4.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=184bp
MYPGTTPGCCGHTQVCTTPGCCVHTQVCTTPGCCGHTRVCTRVLHLVVVF
ILGYVPGYYTWLLCSYSGMYAGNLTVYTLLDTPWQSFYCRRLIVIVSGRH
PKLGCFYVFVLFLSASTYIYLFIYCRSRMINGRVVGVALFCPSPLPPSLA
LPLFIDFRVGVGNLIVRSIQSVRRMVAADSRCR*
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mRNA from alignment at L-digitata_M_contig9969:4375..5280-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig9969.4.1 ID=mRNA_L-digitata_M_contig9969.4.1|Name=mRNA_L-digitata_M_contig9969.4.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=906bp|location=Sequence derived from alignment at L-digitata_M_contig9969:4375..5280- (Laminaria digitata LdigPH10_18mv male)
AGAATATATACTATATACTCTGGGATACCCGGGTATTACACCTGGTTGTT
ACGGTCATACTCGGGTTGGTTCCACTGTTTGTGGTGTGCATACTCGGGTA
TGTACCCGGGTACTACACCTGGGTGTTGTGGTCATACTCGGGTATGTACG
CGGGTACTACGCCCGGTTGTTGTGGTCATACTCGGGTATGTATCCGGGTA
CTACACCTGGTTGTTGTGGTCATACTCAGGTATGTACTACACCTGGTTGT
TGTGTTCATACTCAGGTATGTACTACACCTGGTTGTTGTGGTCATACTCG
GGTATGTACCCGGGTACTACACCTGGTTGTTGTGTTCATACTCGGGTATG
TACCCGGGTACTACACCTGGTTGTTGTGTTCATACTCGGGTATGTACGCG
GGTAACCTCACAGTATATACCCTACTGGACACACCCTGGCAGAGTTTTTA
TTGTCGGCGTCTGATTGTTATAGTGTCTGGCCGGCACCCAAAGCTTGGAT
GTTTTTACGTTTTTGTCCTTTTCTTGTCTGCTTCGACATATATTTATTTA
TTTATTTATTGTCGTAGCCGTATGATTAATGGGCGTGTGGTGGGGGTTGC
TCTCTTCTGCCCCTCACCGCTCCCCCCTTCCCTCGCCCTCCCCCTCTTTA
TCGATTTTCGGGTCGGCGTCGGTAATTTGATTGTTCGTTCCATACAGTCT
GTGCGAAGAATGGTAGCCGCAGATTCTAGATGCAGATGACCATCTGCGAC
GGTTTTATGCACCTCCTTCTCCTGCTTGCACGCCGATAGTGGGGGACGAA
AGAAGAAAGGTGAACAGCAGTAGGTATTCAATACCTGGAAGATGATAGGT
CAGTCGTTCAACTGTGTACACTAGTACATACCTTAAACGGGTTTTGCGCG
GCGAGG
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Coding sequence (CDS) from alignment at L-digitata_M_contig9969:4375..5280-

>mRNA_L-digitata_M_contig9969.4.1 ID=mRNA_L-digitata_M_contig9969.4.1|Name=mRNA_L-digitata_M_contig9969.4.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=552bp|location=Sequence derived from alignment at L-digitata_M_contig9969:4375..5280- (Laminaria digitata LdigPH10_18mv male)
ATGTATCCGGGTACTACACCTGGTTGTTGTGGTCATACTCAGGTATGTAC
TACACCTGGTTGTTGTGTTCATACTCAGGTATGTACTACACCTGGTTGTT
GTGGTCATACTCGGGTATGTACCCGGGTACTACACCTGGTTGTTGTGTTC
ATACTCGGGTATGTACCCGGGTACTACACCTGGTTGTTGTGTTCATACTC
GGGTATGTACGCGGGTAACCTCACAGTATATACCCTACTGGACACACCCT
GGCAGAGTTTTTATTGTCGGCGTCTGATTGTTATAGTGTCTGGCCGGCAC
CCAAAGCTTGGATGTTTTTACGTTTTTGTCCTTTTCTTGTCTGCTTCGAC
ATATATTTATTTATTTATTTATTGTCGTAGCCGTATGATTAATGGGCGTG
TGGTGGGGGTTGCTCTCTTCTGCCCCTCACCGCTCCCCCCTTCCCTCGCC
CTCCCCCTCTTTATCGATTTTCGGGTCGGCGTCGGTAATTTGATTGTTCG
TTCCATACAGTCTGTGCGAAGAATGGTAGCCGCAGATTCTAGATGCAGAT
GA
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