prot_L-digitata_M_contig99656.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig99656.1.1
Unique Nameprot_L-digitata_M_contig99656.1.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length68
Homology
BLAST of mRNA_L-digitata_M_contig99656.1.1 vs. uniprot
Match: A0A6H5L9Y2_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9Y2_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 1.000e-32
Identity = 63/68 (92.65%), Postives = 65/68 (95.59%), Query Frame = 0
Query:    1 QVPVNIKRLVWNAQKMFQIKPDGESDMSPTYVIRRTREVCEGLSVVTGEDSLSIEAQRNATMLFKILV 68
            QVPVNIKRLVWNAQKMFQIKP GESDMSPTYVIRR RE+CEGLSVVTGEDSLS+EAQ NATMLFKILV
Sbjct: 1014 QVPVNIKRLVWNAQKMFQIKPYGESDMSPTYVIRRVRELCEGLSVVTGEDSLSVEAQSNATMLFKILV 1081          
BLAST of mRNA_L-digitata_M_contig99656.1.1 vs. uniprot
Match: D8LRY3_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY3_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 3.060e-31
Identity = 61/68 (89.71%), Postives = 64/68 (94.12%), Query Frame = 0
Query:    1 QVPVNIKRLVWNAQKMFQIKPDGESDMSPTYVIRRTREVCEGLSVVTGEDSLSIEAQRNATMLFKILV 68
            QVPVNIKRLVWN+QKMFQIK  GESDMSPTYVIRR RE+CEGLSVVTGEDSLS+EAQ NATMLFKILV
Sbjct: 1013 QVPVNIKRLVWNSQKMFQIKSYGESDMSPTYVIRRVRELCEGLSVVTGEDSLSVEAQSNATMLFKILV 1080          
BLAST of mRNA_L-digitata_M_contig99656.1.1 vs. uniprot
Match: Q1ACV3_ACEPM (DNA-directed RNA polymerase (Fragment) n=1 Tax=Acer palmatum TaxID=66201 RepID=Q1ACV3_ACEPM)

HSP 1 Score: 76.6 bits (187), Expect = 2.090e-15
Identity = 35/67 (52.24%), Postives = 49/67 (73.13%), Query Frame = 0
Query:    2 VPVNIKRLVWNAQKMFQIKPDGESDMSPTYVIRRTREVCEGLSVVTGEDSLSIEAQRNATMLFKILV 68
            +PVN+KRL+WNAQK F++ P   SDM P  V+    ++ E L VV G+D+LS+EAQ+NAT+ F IL+
Sbjct:  127 MPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAIDKLQERLKVVPGDDALSVEAQKNATLFFNILL 193          
BLAST of mRNA_L-digitata_M_contig99656.1.1 vs. uniprot
Match: A0A6P9E4T1_JUGRE (DNA-directed RNA polymerase subunit n=133 Tax=Magnoliopsida TaxID=3398 RepID=A0A6P9E4T1_JUGRE)

HSP 1 Score: 78.2 bits (191), Expect = 2.760e-15
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 0
Query:    2 VPVNIKRLVWNAQKMFQIKPDGESDMSPTYVIRRTREVCEGLSVVTGEDSLSIEAQRNATMLFKILV 68
            +PVN+KRL+WNAQK+F+I P   SDM P  ++    ++ E L VV GED LS+EAQ+NAT+ F IL+
Sbjct:  975 LPVNLKRLIWNAQKIFKIDPRRHSDMHPMEIVEAVDKLQERLKVVPGEDLLSVEAQKNATLFFSILL 1041          
BLAST of mRNA_L-digitata_M_contig99656.1.1 vs. uniprot
Match: A0A426XDW5_ENSVE (DNA-directed RNA polymerase (Fragment) n=2 Tax=Ensete ventricosum TaxID=4639 RepID=A0A426XDW5_ENSVE)

HSP 1 Score: 77.8 bits (190), Expect = 3.740e-15
Identity = 38/68 (55.88%), Postives = 49/68 (72.06%), Query Frame = 0
Query:    1 QVPVNIKRLVWNAQKMFQIKPDGESDMSPTYVIRRTREVCEGLSVVTGEDSLSIEAQRNATMLFKILV 68
            Q+PVN+KRL+WNAQK F+I P   SDM P  ++    ++ E L VV G+D LS EAQRNAT+LF IL+
Sbjct:  211 QMPVNLKRLIWNAQKTFKIDPRRPSDMHPMEIVDAVDKLQERLKVVAGDDFLSTEAQRNATLLFGILL 278          
BLAST of mRNA_L-digitata_M_contig99656.1.1 vs. uniprot
Match: V4SDF7_CITCL (DNA-directed RNA polymerase subunit n=7 Tax=Sapindales TaxID=41937 RepID=V4SDF7_CITCL)

HSP 1 Score: 77.4 bits (189), Expect = 5.160e-15
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 0
Query:    2 VPVNIKRLVWNAQKMFQIKPDGESDMSPTYVIRRTREVCEGLSVVTGEDSLSIEAQRNATMLFKILV 68
            +PVN+KRL+WNAQK F++ P   SDM P  V+    ++ E L VV GED LS+EAQ+NAT+ F IL+
Sbjct:  975 LPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILL 1041          
BLAST of mRNA_L-digitata_M_contig99656.1.1 vs. uniprot
Match: A1YIC1_BLAEM (DNA-directed RNA polymerase subunit (Fragment) n=1 Tax=Blastocladiella emersonii TaxID=4808 RepID=A1YIC1_BLAEM)

HSP 1 Score: 77.0 bits (188), Expect = 6.990e-15
Identity = 31/67 (46.27%), Postives = 49/67 (73.13%), Query Frame = 0
Query:    2 VPVNIKRLVWNAQKMFQIKPDGESDMSPTYVIRRTREVCEGLSVVTGEDSLSIEAQRNATMLFKILV 68
            +P N+ R++WNAQ +F+I     S++ P YV+++ R +C+GL V+ G D +S+EAQRNAT+L + LV
Sbjct:  884 LPCNLNRIIWNAQNLFKIDKSKPSNLHPDYVVKKVRALCDGLVVIPGTDKISVEAQRNATLLMQALV 950          
BLAST of mRNA_L-digitata_M_contig99656.1.1 vs. uniprot
Match: A1YIC2_9FUNG (DNA-directed RNA polymerase subunit (Fragment) n=2 Tax=Coelomomyces stegomyiae TaxID=143960 RepID=A1YIC2_9FUNG)

HSP 1 Score: 76.6 bits (187), Expect = 9.550e-15
Identity = 30/67 (44.78%), Postives = 52/67 (77.61%), Query Frame = 0
Query:    2 VPVNIKRLVWNAQKMFQIKPDGESDMSPTYVIRRTREVCEGLSVVTGEDSLSIEAQRNATMLFKILV 68
            +P+N+KR++WNAQ +F+I     S++ P YV+ + R +C+ L+V+ G+D +S+EAQ+NAT+L +IL+
Sbjct:  893 LPMNLKRIIWNAQNLFKIDKQRPSNLHPDYVVNQVRGLCDKLTVIRGDDKISLEAQKNATLLTQILI 959          
BLAST of mRNA_L-digitata_M_contig99656.1.1 vs. uniprot
Match: A0A1V9Z1K8_9STRA (DNA-directed RNA polymerase subunit n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9Z1K8_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 9.630e-15
Identity = 38/68 (55.88%), Postives = 50/68 (73.53%), Query Frame = 0
Query:    1 QVPVNIKRLVWNAQKMFQIKPDGESDMSPTYVIRRTREVCEGLSVVTGEDSLSIEAQRNATMLFKILV 68
            QVPVNIKRLV NAQ++F I     S + P ++I   R++C  + VV G+D+LSIEAQ NAT+LF+ILV
Sbjct: 1027 QVPVNIKRLVQNAQQLFSISTLHPSTLHPRHIIEGVRDLCREIIVVKGDDNLSIEAQENATLLFQILV 1094          
BLAST of mRNA_L-digitata_M_contig99656.1.1 vs. uniprot
Match: A0A804I6Z0_MUSAM (DNA-directed RNA polymerase subunit n=2 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804I6Z0_MUSAM)

HSP 1 Score: 76.3 bits (186), Expect = 1.310e-14
Identity = 37/67 (55.22%), Postives = 49/67 (73.13%), Query Frame = 0
Query:    2 VPVNIKRLVWNAQKMFQIKPDGESDMSPTYVIRRTREVCEGLSVVTGEDSLSIEAQRNATMLFKILV 68
            +PVN+KRL+WNAQK F+I P   SDM P  ++    ++ E L VV G+D LS+EAQRNAT+LF IL+
Sbjct:  976 MPVNLKRLIWNAQKTFKIDPRRPSDMHPMEIVDAVDKLQERLKVVPGDDFLSMEAQRNATLLFGILL 1042          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99656.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9Y2_9PHAE1.000e-3292.65DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
D8LRY3_ECTSI3.060e-3189.71DNA-directed RNA polymerase subunit n=2 Tax=Ectoca... [more]
Q1ACV3_ACEPM2.090e-1552.24DNA-directed RNA polymerase (Fragment) n=1 Tax=Ace... [more]
A0A6P9E4T1_JUGRE2.760e-1553.73DNA-directed RNA polymerase subunit n=133 Tax=Magn... [more]
A0A426XDW5_ENSVE3.740e-1555.88DNA-directed RNA polymerase (Fragment) n=2 Tax=Ens... [more]
V4SDF7_CITCL5.160e-1553.73DNA-directed RNA polymerase subunit n=7 Tax=Sapind... [more]
A1YIC1_BLAEM6.990e-1546.27DNA-directed RNA polymerase subunit (Fragment) n=1... [more]
A1YIC2_9FUNG9.550e-1544.78DNA-directed RNA polymerase subunit (Fragment) n=2... [more]
A0A1V9Z1K8_9STRA9.630e-1555.88DNA-directed RNA polymerase subunit n=4 Tax=Saprol... [more]
A0A804I6Z0_MUSAM1.310e-1455.22DNA-directed RNA polymerase subunit n=2 Tax=Musa a... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007075RNA polymerase Rpb1, domain 6PFAMPF04992RNA_pol_Rpb1_6coord: 1..68
e-value: 4.1E-24
score: 85.4
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 2..67

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99656contigL-digitata_M_contig99656:24..227 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99656.1.1mRNA_L-digitata_M_contig99656.1.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig99656 24..227 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig99656.1.1 ID=prot_L-digitata_M_contig99656.1.1|Name=mRNA_L-digitata_M_contig99656.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=68bp
QVPVNIKRLVWNAQKMFQIKPDGESDMSPTYVIRRTREVCEGLSVVTGED
SLSIEAQRNATMLFKILV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007075RNA_pol_Rpb1_6