mRNA_L-digitata_M_contig99138.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99138.1.1
Unique NamemRNA_L-digitata_M_contig99138.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig99138.1.1 vs. uniprot
Match: A0A2D8ZTZ5_9PROT (3-deoxy-manno-octulosonate cytidylyltransferase n=7 Tax=root TaxID=1 RepID=A0A2D8ZTZ5_9PROT)

HSP 1 Score: 124 bits (312), Expect = 9.260e-34
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    1 MKTLIVVPARYGSTRFPGKPLVEIAGRTMVSRVAAMASRAAAELDDAASVVATDDERIASHCRDLG 198
            MKTLIVVPARYGSTRFPGKPLVEIAGRTMVSRVAAMASRAAAELDDAASVVATDDERIASHCRDLG
Sbjct:    1 MKTLIVVPARYGSTRFPGKPLVEIAGRTMVSRVAAMASRAAAELDDAASVVATDDERIASHCRDLG 66
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BLAST of mRNA_L-digitata_M_contig99138.1.1 vs. uniprot
Match: A0A059E2C2_9PROT (3-deoxy-manno-octulosonate cytidylyltransferase n=2 Tax=Hyphomonas TaxID=85 RepID=A0A059E2C2_9PROT)

HSP 1 Score: 116 bits (290), Expect = 1.810e-30
Identity = 60/66 (90.91%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 MKTLIVVPARYGSTRFPGKPLVEIAGRTMVSRVAAMASRAAAELDDAASVVATDDERIASHCRDLG 198
            MKTLIVVPARYGSTRFPGKPLVEIAGRTMVSRVAAMASRAAA+LDDAAS+VATDD RI+ HCR+LG
Sbjct:    1 MKTLIVVPARYGSTRFPGKPLVEIAGRTMVSRVAAMASRAAAKLDDAASIVATDDTRISEHCRELG 66
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BLAST of mRNA_L-digitata_M_contig99138.1.1 vs. uniprot
Match: A0A062UBS7_9PROT (Uncharacterized protein n=2 Tax=Hyphomonas TaxID=85 RepID=A0A062UBS7_9PROT)

HSP 1 Score: 114 bits (284), Expect = 1.420e-29
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:    1 MKTLIVVPARYGSTRFPGKPLVEIAGRTMVSRVAAMASRAAAELDDAASVVATDDERIASHCRDLG 198
            MKTLIVVPARYGSTRFPGKPLVEIAGRTMVSRVAAMA+RAA  L+DA S+VATDDERIASHCR+LG
Sbjct:    1 MKTLIVVPARYGSTRFPGKPLVEIAGRTMVSRVAAMAARAADALEDATSIVATDDERIASHCRELG 66
[Close]
BLAST of mRNA_L-digitata_M_contig99138.1.1 vs. uniprot
Match: A0A069E8C5_9PROT (3-deoxy-manno-octulosonate cytidylyltransferase n=6 Tax=Hyphomonas TaxID=85 RepID=A0A069E8C5_9PROT)

HSP 1 Score: 102 bits (253), Expect = 5.820e-25
Identity = 54/66 (81.82%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:    1 MKTLIVVPARYGSTRFPGKPLVEIAGRTMVSRVAAMASRAAAELDDAASVVATDDERIASHCRDLG 198
            M+TLIVVPARY STR PGKPLV IAGRTMVSRVAAMA++AA  L DA  VVATDDERIA+HCRDLG
Sbjct:    1 MRTLIVVPARYASTRLPGKPLVTIAGRTMVSRVAAMAAKAADALGDAQHVVATDDERIATHCRDLG 66
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BLAST of mRNA_L-digitata_M_contig99138.1.1 vs. uniprot
Match: A0A059GAY4_9PROT (3-deoxy-manno-octulosonate cytidylyltransferase n=2 Tax=Hyphomonas TaxID=85 RepID=A0A059GAY4_9PROT)

HSP 1 Score: 96.7 bits (239), Expect = 6.880e-23
Identity = 50/64 (78.12%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:    1 MKTLIVVPARYGSTRFPGKPLVEIAGRTMVSRVAAMASRAAAELDDAASVVATDDERIASHCRD 192
            MKTLIVVPARYGSTRFPGKPL  IAG++MVSRVAAMA++AAA L+DAA VVATDD RI +HC++
Sbjct:    1 MKTLIVVPARYGSTRFPGKPLTLIAGQSMVSRVAAMAAKAAAALEDAAHVVATDDARIEAHCKE 64
[Close]
BLAST of mRNA_L-digitata_M_contig99138.1.1 vs. uniprot
Match: A0A0F2RD87_9PROT (3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Hyphomonas sp. BRH_c22 TaxID=1629710 RepID=A0A0F2RD87_9PROT)

HSP 1 Score: 95.1 bits (235), Expect = 2.680e-22
Identity = 51/66 (77.27%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:    1 MKTLIVVPARYGSTRFPGKPLVEIAGRTMVSRVAAMASRAAAELDDAASVVATDDERIASHCRDLG 198
            MKTLIVVPARYGSTRFPGKPL  IAGR+MVSRVA MA +AA  L DAA VVATDD RI +HCR+ G
Sbjct:    1 MKTLIVVPARYGSTRFPGKPLKLIAGRSMVSRVANMAQKAAGALADAACVVATDDSRIEAHCRERG 66
[Close]
BLAST of mRNA_L-digitata_M_contig99138.1.1 vs. uniprot
Match: A0A0F2QBV0_9PROT (3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Hyphomonadaceae bacterium BRH_c29 TaxID=1629720 RepID=A0A0F2QBV0_9PROT)

HSP 1 Score: 94.4 bits (233), Expect = 5.290e-22
Identity = 49/66 (74.24%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 MKTLIVVPARYGSTRFPGKPLVEIAGRTMVSRVAAMASRAAAELDDAASVVATDDERIASHCRDLG 198
            M+TLIVVPARY S R PGKPL++IAGR+MVSRVAAMA++AA  L DA SVVATDDERI +HC+ LG
Sbjct:    1 MQTLIVVPARYASQRLPGKPLIQIAGRSMVSRVAAMAAKAADALGDAESVVATDDERIQAHCKALG 66
[Close]
BLAST of mRNA_L-digitata_M_contig99138.1.1 vs. uniprot
Match: A0A059FQS7_9PROT (3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Hyphomonas johnsonii MHS-2 TaxID=1280950 RepID=A0A059FQS7_9PROT)

HSP 1 Score: 94.0 bits (232), Expect = 7.430e-22
Identity = 50/66 (75.76%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:    1 MKTLIVVPARYGSTRFPGKPLVEIAGRTMVSRVAAMASRAAAELDDAASVVATDDERIASHCRDLG 198
            MKTLIVVPAR+GSTRFPGKPL  IAGR+MVSRVAAMA +AA  L+DA  VVATDD RI +HC  LG
Sbjct:    1 MKTLIVVPARFGSTRFPGKPLTLIAGRSMVSRVAAMAGKAAQALEDATYVVATDDARIETHCSALG 66
[Close]
BLAST of mRNA_L-digitata_M_contig99138.1.1 vs. uniprot
Match: A0A2W5A2B0_9PROT (3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Micavibrio aeruginosavorus TaxID=349221 RepID=A0A2W5A2B0_9PROT)

HSP 1 Score: 91.7 bits (226), Expect = 5.410e-21
Identity = 43/66 (65.15%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:    1 MKTLIVVPARYGSTRFPGKPLVEIAGRTMVSRVAAMASRAAAELDDAASVVATDDERIASHCRDLG 198
            MKT I++PARYGSTRFPGKPL++I G++M+SRVAA+AS AA+ L +    VAT+DERIA+HC D+G
Sbjct:    1 MKTAIIIPARYGSTRFPGKPLIQIGGKSMLSRVAAIASEAASRLKNITMAVATEDERIAAHCHDIG 66
[Close]
BLAST of mRNA_L-digitata_M_contig99138.1.1 vs. uniprot
Match: A0A350ZT14_9PROT (3-deoxy-manno-octulosonate cytidylyltransferase (Fragment) n=1 Tax=Hyphomonas sp. TaxID=87 RepID=A0A350ZT14_9PROT)

HSP 1 Score: 87.4 bits (215), Expect = 7.280e-20
Identity = 48/66 (72.73%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:    1 MKTLIVVPARYGSTRFPGKPLVEIAGRTMVSRVAAMASRAAAELDDAASVVATDDERIASHCRDLG 198
            MKTLIVVPARY S R PGKPL  IAGR+MVSRVA +A RAAA L  A  VVATDD RI  HCRD G
Sbjct:    1 MKTLIVVPARYASQRLPGKPLALIAGRSMVSRVAGLARRAAAGLPQAEYVVATDDTRILEHCRDAG 66
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99138.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D8ZTZ5_9PROT9.260e-34100.003-deoxy-manno-octulosonate cytidylyltransferase n=... [more]
A0A059E2C2_9PROT1.810e-3090.913-deoxy-manno-octulosonate cytidylyltransferase n=... [more]
A0A062UBS7_9PROT1.420e-2989.39Uncharacterized protein n=2 Tax=Hyphomonas TaxID=8... [more]
A0A069E8C5_9PROT5.820e-2581.823-deoxy-manno-octulosonate cytidylyltransferase n=... [more]
A0A059GAY4_9PROT6.880e-2378.133-deoxy-manno-octulosonate cytidylyltransferase n=... [more]
A0A0F2RD87_9PROT2.680e-2277.273-deoxy-manno-octulosonate cytidylyltransferase n=... [more]
A0A0F2QBV0_9PROT5.290e-2274.243-deoxy-manno-octulosonate cytidylyltransferase n=... [more]
A0A059FQS7_9PROT7.430e-2275.763-deoxy-manno-octulosonate cytidylyltransferase n=... [more]
A0A2W5A2B0_9PROT5.410e-2165.153-deoxy-manno-octulosonate cytidylyltransferase n=... [more]
A0A350ZT14_9PROT7.280e-2072.733-deoxy-manno-octulosonate cytidylyltransferase (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99138contigL-digitata_M_contig99138:3..200 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1207058.L53_10990
Preferred namekdsB
PFAMsCTP_transf_3
Model size198
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00152,RC00910
KEGG koko:K00979
KEGG ReactionR03351,R11396
KEGG Pathwayko00540,ko01100,map00540,map01100
KEGG ModuleM00063
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.38e-33
EggNOG OGsCOG1212@1|root,COG1212@2|Bacteria,1MUUU@1224|Proteobacteria,2TUQM@28211|Alphaproteobacteria,43XA9@69657|Hyphomonadaceae
EC2.7.7.38
DescriptionBelongs to the KdsB family
Cds size198
COG categoryM
BRITEko00000,ko00001,ko00002,ko01000,ko01005
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408649.1121569-CDS-L-digitata_M_contig99138:2..2001682408649.1121569-CDS-L-digitata_M_contig99138:2..200Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99138 3..200 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99138.1.1prot_L-digitata_M_contig99138.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99138 3..200 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99138.1.1

>prot_L-digitata_M_contig99138.1.1 ID=prot_L-digitata_M_contig99138.1.1|Name=mRNA_L-digitata_M_contig99138.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=66bp
MKTLIVVPARYGSTRFPGKPLVEIAGRTMVSRVAAMASRAAAELDDAASV
VATDDERIASHCRDLG
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mRNA from alignment at L-digitata_M_contig99138:3..200-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99138.1.1 ID=mRNA_L-digitata_M_contig99138.1.1|Name=mRNA_L-digitata_M_contig99138.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=198bp|location=Sequence derived from alignment at L-digitata_M_contig99138:3..200- (Laminaria digitata LdigPH10_18mv male)
ATGAAAACGCTGATCGTTGTCCCCGCCCGCTATGGATCCACCCGGTTCCC
CGGCAAGCCGCTGGTCGAGATCGCCGGCCGCACCATGGTGAGCCGGGTGG
CCGCGATGGCTTCGCGTGCCGCCGCTGAACTGGATGATGCTGCAAGTGTC
GTGGCCACCGATGACGAGCGCATCGCCAGCCATTGCCGGGACCTCGGC
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Coding sequence (CDS) from alignment at L-digitata_M_contig99138:3..200-

>mRNA_L-digitata_M_contig99138.1.1 ID=mRNA_L-digitata_M_contig99138.1.1|Name=mRNA_L-digitata_M_contig99138.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=198bp|location=Sequence derived from alignment at L-digitata_M_contig99138:3..200- (Laminaria digitata LdigPH10_18mv male)
ATGAAAACGCTGATCGTTGTCCCCGCCCGCTATGGATCCACCCGGTTCCC
CGGCAAGCCGCTGGTCGAGATCGCCGGCCGCACCATGGTGAGCCGGGTGG
CCGCGATGGCTTCGCGTGCCGCCGCTGAACTGGATGATGCTGCAAGTGTC
GTGGCCACCGATGACGAGCGCATCGCCAGCCATTGCCGGGACCTCGGC
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