mRNA_L-digitata_M_contig98149.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig98149.1.1
Unique NamemRNA_L-digitata_M_contig98149.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig98149.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig98149contigL-digitata_M_contig98149:50..385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size336
Hectar predicted targeting categoryother localisation
Exons1
Cds size306
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408638.184623-UTR-L-digitata_M_contig98149:49..791682408638.184623-UTR-L-digitata_M_contig98149:49..79Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig98149 50..79 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408638.1980274-CDS-L-digitata_M_contig98149:79..3851682408638.1980274-CDS-L-digitata_M_contig98149:79..385Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig98149 80..385 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig98149.1.1prot_L-digitata_M_contig98149.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig98149 80..385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig98149.1.1

>prot_L-digitata_M_contig98149.1.1 ID=prot_L-digitata_M_contig98149.1.1|Name=mRNA_L-digitata_M_contig98149.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=102bp
MSRSATRAALGMADLPVATGRALHSSFVDAVFAYAGSLQSPLLIAPDDRA
LGSAWLCSDTAGSFKNVVGMLAAICDTVSIENVPPGRAFRFFFTAQKMIG
VR
back to top

mRNA from alignment at L-digitata_M_contig98149:50..385+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig98149.1.1 ID=mRNA_L-digitata_M_contig98149.1.1|Name=mRNA_L-digitata_M_contig98149.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=336bp|location=Sequence derived from alignment at L-digitata_M_contig98149:50..385+ (Laminaria digitata LdigPH10_18mv male)
CCGTTGAACGGATCTTCTGCAGAGACGGTCATGAGCCGTTCTGCAACGAG
GGCGGCGCTTGGAATGGCTGATTTGCCCGTGGCCACCGGCCGGGCTCTTC
ATTCCTCCTTTGTTGATGCAGTGTTCGCATATGCTGGAAGCCTTCAATCG
CCTCTGCTTATAGCGCCGGATGATCGTGCGCTCGGATCGGCCTGGCTCTG
TTCCGATACCGCAGGCAGCTTTAAGAATGTCGTCGGGATGTTGGCTGCCA
TTTGCGATACAGTCTCAATTGAAAATGTGCCGCCAGGTCGGGCGTTTCGT
TTCTTTTTCACAGCGCAAAAAATGATTGGGGTCAGA
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig98149:50..385+

>mRNA_L-digitata_M_contig98149.1.1 ID=mRNA_L-digitata_M_contig98149.1.1|Name=mRNA_L-digitata_M_contig98149.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=306bp|location=Sequence derived from alignment at L-digitata_M_contig98149:50..385+ (Laminaria digitata LdigPH10_18mv male)
ATGAGCCGTTCTGCAACGAGGGCGGCGCTTGGAATGGCTGATTTGCCCGT
GGCCACCGGCCGGGCTCTTCATTCCTCCTTTGTTGATGCAGTGTTCGCAT
ATGCTGGAAGCCTTCAATCGCCTCTGCTTATAGCGCCGGATGATCGTGCG
CTCGGATCGGCCTGGCTCTGTTCCGATACCGCAGGCAGCTTTAAGAATGT
CGTCGGGATGTTGGCTGCCATTTGCGATACAGTCTCAATTGAAAATGTGC
CGCCAGGTCGGGCGTTTCGTTTCTTTTTCACAGCGCAAAAAATGATTGGG
GTCAGA
back to top