prot_L-digitata_M_contig9709.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig9709.1.1
Unique Nameprot_L-digitata_M_contig9709.1.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length178
Homology
BLAST of mRNA_L-digitata_M_contig9709.1.1 vs. uniprot
Match: A0A6H5KQ40_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ40_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 3.650e-9
Identity = 41/93 (44.09%), Postives = 52/93 (55.91%), Query Frame = 0
Query:    2 AVYLANRVPSTPLGGKTPFSMWHGGTPPSLEHLRTFGARA----------------EGRMVGYRKDSKTYRVWE-SGTKIVESRNVTFIKTLP 77
            A YL NR P + LGG TP+S  H  +P  L  LR  GARA                EG++ G+  DS+TYRV   S   +VESRN+TFI++LP
Sbjct:   84 AAYLFNRSPHSALGGATPYSKLHNKSP-DLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNLTFIESLP 175          
BLAST of mRNA_L-digitata_M_contig9709.1.1 vs. uniprot
Match: A0A0J7MT47_LASNI (Copia protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7MT47_LASNI)

HSP 1 Score: 59.7 bits (143), Expect = 6.630e-8
Identity = 40/114 (35.09%), Postives = 54/114 (47.37%), Query Frame = 0
Query:    2 AVYLANRVPSTPLGGKTPFSMWHGGTPPSLEHLRTFGARA-----------------EGRMVGYRKDSKTYRVWESGTKIVESRNVTFIKTLPVKLNTLEHDHNDSDDGTFLDL 98
            A YL NR P++ LGG+TP+ +WH    P + HLR FG +                  EGR VGY   SK Y+VW    + V++  V  IK L  KL T         +  F++L
Sbjct:    9 ANYLRNRCPTSFLGGRTPYEIWHN-YEPEVGHLREFGCKVFCLDTKPKTGKLDPRTKEGRFVGYSDTSKAYQVWFPDDRNVQA--VRDIKFLEEKLLTFRSPERTEQENPFIEL 119          
BLAST of mRNA_L-digitata_M_contig9709.1.1 vs. uniprot
Match: A0A6H5JRS9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS9_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.910e-7
Identity = 38/91 (41.76%), Postives = 51/91 (56.04%), Query Frame = 0
Query:    2 AVYLANRVPSTPLGGKTPFSMWHGGTPPSLEHLRTFGARA----------------EGRMVGYRKDSKTYRVWESGT-KIVESRNVTFIKT 75
            AV L+NR P + LGG TP+   +G     L  LR  GAR+                EG++ G+ +DSKTYR++   T  +VESRNVTFI+T
Sbjct: 1120 AVDLSNRSPHSVLGGVTPYFKMYG-KEADLSRLRVIGARSFVNYERYTKKLSDRTFEGKLCGFSRDSKTYRIYNPATGNVVESRNVTFIET 1209          
BLAST of mRNA_L-digitata_M_contig9709.1.1 vs. uniprot
Match: A0A1B6K3Y7_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Homalodisca liturata TaxID=320908 RepID=A0A1B6K3Y7_9HEMI)

HSP 1 Score: 51.2 bits (121), Expect = 6.280e-5
Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 0
Query:    2 AVYLANRVPSTPLGGKTPFSMWHGGTPPSLEHLRTFGARA 41
            A Y+ NR PST +GGKTP+ +WHG  P  L+H+R FG+RA
Sbjct:  111 ANYIRNRCPSTCIGGKTPYEIWHGKLP-DLKHMRIFGSRA 149          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig9709.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KQ40_9PHAE3.650e-944.09Integrase catalytic domain-containing protein (Fra... [more]
A0A0J7MT47_LASNI6.630e-835.09Copia protein n=1 Tax=Lasius niger TaxID=67767 Rep... [more]
A0A6H5JRS9_9PHAE1.910e-741.76Integrase catalytic domain-containing protein n=1 ... [more]
A0A1B6K3Y7_9HEMI6.280e-557.50Integrase catalytic domain-containing protein (Fra... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..126

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig9709contigL-digitata_M_contig9709:594..1321 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig9709.1.1mRNA_L-digitata_M_contig9709.1.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig9709 459..1783 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig9709.1.1 ID=prot_L-digitata_M_contig9709.1.1|Name=mRNA_L-digitata_M_contig9709.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=178bp
MAVYLANRVPSTPLGGKTPFSMWHGGTPPSLEHLRTFGARAEGRMVGYRK
DSKTYRVWESGTKIVESRNVTFIKTLPVKLNTLEHDHNDSDDGTFLDLES
SSISLGTQEEMPETEADAETDTGGSQTIYPSTLDYAYIIGHPLIDIPNTR
EVSFTPRNHREAMASAQASEWQASMER*
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