mRNA_L-digitata_M_contig101413.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101413.2.1
Unique NamemRNA_L-digitata_M_contig101413.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig101413.2.1 vs. uniprot
Match: A0A2D7FMA2_9PROT (Transcriptional repressor NrdR n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D7FMA2_9PROT)

HSP 1 Score: 120 bits (302), Expect = 1.230e-33
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 1 
Query:    1 MKCPFCGSDDTQVKDSRPTEDNTAIRRRRSCTSCGARFTTFERVQLRELTVLKSGGRRE 177
            MKCPFCGSDDTQVKDSRPTEDNTAIRRRRSCT+CGARFTTFERVQLRELTVLKSGGRRE
Sbjct:    1 MKCPFCGSDDTQVKDSRPTEDNTAIRRRRSCTACGARFTTFERVQLRELTVLKSGGRRE 59
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BLAST of mRNA_L-digitata_M_contig101413.2.1 vs. uniprot
Match: A0A2D8PPH4_9PROT (Transcriptional repressor NrdR n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PPH4_9PROT)

HSP 1 Score: 119 bits (297), Expect = 6.690e-33
Identity = 56/59 (94.92%), Postives = 59/59 (100.00%), Query Frame = 1 
Query:    1 MKCPFCGSDDTQVKDSRPTEDNTAIRRRRSCTSCGARFTTFERVQLRELTVLKSGGRRE 177
            MKCPFCGSDDTQVKDSRPTEDNTAIRRRRSCT+CGARFTTFERVQLRE+TVLK+GGRRE
Sbjct:    1 MKCPFCGSDDTQVKDSRPTEDNTAIRRRRSCTACGARFTTFERVQLREMTVLKAGGRRE 59
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BLAST of mRNA_L-digitata_M_contig101413.2.1 vs. uniprot
Match: A0A2S6Q781_9PROT (Transcriptional repressor NrdR n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2S6Q781_9PROT)

HSP 1 Score: 115 bits (287), Expect = 2.210e-31
Identity = 55/59 (93.22%), Postives = 58/59 (98.31%), Query Frame = 1 
Query:    1 MKCPFCGSDDTQVKDSRPTEDNTAIRRRRSCTSCGARFTTFERVQLRELTVLKSGGRRE 177
            MKCPFCGSDDTQVKDSRPTED+TAIRRRRSC +CGARFTTFERVQLRELTVLK+GGRRE
Sbjct:    1 MKCPFCGSDDTQVKDSRPTEDSTAIRRRRSCGACGARFTTFERVQLRELTVLKAGGRRE 59
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BLAST of mRNA_L-digitata_M_contig101413.2.1 vs. uniprot
Match: UPI0019E3248B (Transcriptional repressor NrdR n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019E3248B)

HSP 1 Score: 109 bits (273), Expect = 2.860e-29
Identity = 51/59 (86.44%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:    1 MKCPFCGSDDTQVKDSRPTEDNTAIRRRRSCTSCGARFTTFERVQLRELTVLKSGGRRE 177
            M+CPFCG DDTQVKDSRPTEDN AIRRRR CT CGARFTTFERVQLRELTV+K GG+RE
Sbjct:    1 MRCPFCGHDDTQVKDSRPTEDNAAIRRRRFCTGCGARFTTFERVQLRELTVMKKGGKRE 59
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BLAST of mRNA_L-digitata_M_contig101413.2.1 vs. uniprot
Match: NRDR_RHOCS (Transcriptional repressor NrdR n=4 Tax=Rhodospirillales TaxID=204441 RepID=NRDR_RHOCS)

HSP 1 Score: 108 bits (271), Expect = 5.590e-29
Identity = 51/59 (86.44%), Postives = 56/59 (94.92%), Query Frame = 1 
Query:    1 MKCPFCGSDDTQVKDSRPTEDNTAIRRRRSCTSCGARFTTFERVQLRELTVLKSGGRRE 177
            M+CPFCG+DDTQVKDSRPTEDN+AIRRRR C +CGARFTTFERVQLRELTV+KSGG RE
Sbjct:    1 MRCPFCGNDDTQVKDSRPTEDNSAIRRRRFCPACGARFTTFERVQLRELTVVKSGGSRE 59
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BLAST of mRNA_L-digitata_M_contig101413.2.1 vs. uniprot
Match: A0A239HAN1_9PROT (Transcriptional repressor NrdR n=3 Tax=Azospirillaceae TaxID=2829815 RepID=A0A239HAN1_9PROT)

HSP 1 Score: 108 bits (270), Expect = 8.140e-29
Identity = 51/59 (86.44%), Postives = 56/59 (94.92%), Query Frame = 1 
Query:    1 MKCPFCGSDDTQVKDSRPTEDNTAIRRRRSCTSCGARFTTFERVQLRELTVLKSGGRRE 177
            M+CPFCG+DDTQVKDSRPTEDN+AIRRRR C+SCGARFTTFERVQLRELTV+KS G RE
Sbjct:    1 MRCPFCGNDDTQVKDSRPTEDNSAIRRRRFCSSCGARFTTFERVQLRELTVVKSSGARE 59
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BLAST of mRNA_L-digitata_M_contig101413.2.1 vs. uniprot
Match: UPI00110600E5 (transcriptional regulator NrdR n=1 Tax=Luteithermobacter gelatinilyticus TaxID=2582913 RepID=UPI00110600E5)

HSP 1 Score: 108 bits (269), Expect = 1.190e-28
Identity = 50/58 (86.21%), Postives = 56/58 (96.55%), Query Frame = 1 
Query:    1 MKCPFCGSDDTQVKDSRPTEDNTAIRRRRSCTSCGARFTTFERVQLRELTVLKSGGRR 174
            M+CPFCG+DDTQVKDSRPTEDN+AIRRRRSC++CGARFTTFERVQLRELTVLK  G+R
Sbjct:    1 MRCPFCGNDDTQVKDSRPTEDNSAIRRRRSCSACGARFTTFERVQLRELTVLKKNGQR 58
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BLAST of mRNA_L-digitata_M_contig101413.2.1 vs. uniprot
Match: A0A6I4UQ40_9SPHN (Transcriptional repressor NrdR n=1 Tax=Croceibacterium soli TaxID=1739690 RepID=A0A6I4UQ40_9SPHN)

HSP 1 Score: 108 bits (269), Expect = 1.290e-28
Identity = 50/59 (84.75%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 MKCPFCGSDDTQVKDSRPTEDNTAIRRRRSCTSCGARFTTFERVQLRELTVLKSGGRRE 177
            M+CPFC  DD+QVKDSRPTEDNTAIRRRR C SCGARFTTFERVQLRE+TV+KSGG+RE
Sbjct:    1 MRCPFCAHDDSQVKDSRPTEDNTAIRRRRQCESCGARFTTFERVQLREITVVKSGGKRE 59
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BLAST of mRNA_L-digitata_M_contig101413.2.1 vs. uniprot
Match: A0A2E1CXV2_9PROT (Transcriptional repressor NrdR n=1 Tax=Kordiimonas sp. TaxID=1970157 RepID=A0A2E1CXV2_9PROT)

HSP 1 Score: 107 bits (268), Expect = 1.590e-28
Identity = 50/58 (86.21%), Postives = 55/58 (94.83%), Query Frame = 1 
Query:    1 MKCPFCGSDDTQVKDSRPTEDNTAIRRRRSCTSCGARFTTFERVQLRELTVLKSGGRR 174
            M+CPFCG++DTQVKDSRPTEDN+AIRRRRSC+ CGARFTTFERVQLRELTVLK  GRR
Sbjct:    1 MRCPFCGNEDTQVKDSRPTEDNSAIRRRRSCSGCGARFTTFERVQLRELTVLKKNGRR 58
[Close]
BLAST of mRNA_L-digitata_M_contig101413.2.1 vs. uniprot
Match: A0A8J2UYD4_9PROT (Transcriptional repressor NrdR n=1 Tax=Siccirubricoccus deserti TaxID=2013562 RepID=A0A8J2UYD4_9PROT)

HSP 1 Score: 107 bits (267), Expect = 2.020e-28
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:    1 MKCPFCGSDDTQVKDSRPTEDNTAIRRRRSCTSCGARFTTFERVQLRELTVLKSGGRR 174
            MKCP+CGSDDTQVKDSRP ED+ AIRRRRSC SCGARFTTFERVQLRE+TVLKS GRR
Sbjct:    1 MKCPYCGSDDTQVKDSRPAEDSAAIRRRRSCPSCGARFTTFERVQLREITVLKSDGRR 58
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101413.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D7FMA2_9PROT1.230e-3398.31Transcriptional repressor NrdR n=1 Tax=Rhodospiril... [more]
A0A2D8PPH4_9PROT6.690e-3394.92Transcriptional repressor NrdR n=1 Tax=Rhodospiril... [more]
A0A2S6Q781_9PROT2.210e-3193.22Transcriptional repressor NrdR n=3 Tax=Alphaproteo... [more]
UPI0019E3248B2.860e-2986.44Transcriptional repressor NrdR n=1 Tax=Proteobacte... [more]
NRDR_RHOCS5.590e-2986.44Transcriptional repressor NrdR n=4 Tax=Rhodospiril... [more]
A0A239HAN1_9PROT8.140e-2986.44Transcriptional repressor NrdR n=3 Tax=Azospirilla... [more]
UPI00110600E51.190e-2886.21transcriptional regulator NrdR n=1 Tax=Luteithermo... [more]
A0A6I4UQ40_9SPHN1.290e-2884.75Transcriptional repressor NrdR n=1 Tax=Croceibacte... [more]
A0A2E1CXV2_9PROT1.590e-2886.21Transcriptional repressor NrdR n=1 Tax=Kordiimonas... [more]
A0A8J2UYD4_9PROT2.020e-2887.93Transcriptional repressor NrdR n=1 Tax=Siccirubric... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101413contigL-digitata_M_contig101413:749..925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog414684.RC1_1341
Preferred namenrdR
PFAMsATP-cone
Model size177
Max annot lvl204441|Rhodospirillales
KEGG koko:K07738
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue9.16e-30
EggNOG OGsCOG1327@1|root,COG1327@2|Bacteria,1RE7V@1224|Proteobacteria,2U75W@28211|Alphaproteobacteria,2JS6X@204441|Rhodospirillales
DescriptionNegatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
Cds size177
COG categoryK
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406618.5574245-CDS-L-digitata_M_contig101413:748..9251682406618.5574245-CDS-L-digitata_M_contig101413:748..925Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101413 749..925 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101413.2.1prot_L-digitata_M_contig101413.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101413 749..925 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101413.2.1

>prot_L-digitata_M_contig101413.2.1 ID=prot_L-digitata_M_contig101413.2.1|Name=mRNA_L-digitata_M_contig101413.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=59bp
MKCPFCGSDDTQVKDSRPTEDNTAIRRRRSCTSCGARFTTFERVQLRELT
VLKSGGRRE
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mRNA from alignment at L-digitata_M_contig101413:749..925+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101413.2.1 ID=mRNA_L-digitata_M_contig101413.2.1|Name=mRNA_L-digitata_M_contig101413.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=177bp|location=Sequence derived from alignment at L-digitata_M_contig101413:749..925+ (Laminaria digitata LdigPH10_18mv male)
ATGAAGTGCCCTTTCTGCGGATCAGACGACACCCAGGTAAAGGATTCCCG
GCCGACCGAGGATAATACGGCCATCCGGCGGCGGCGGTCGTGCACCTCCT
GCGGTGCGCGTTTCACGACGTTCGAGCGCGTCCAGCTTCGGGAACTTACG
GTCCTGAAGTCCGGCGGTAGACGCGAA
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Coding sequence (CDS) from alignment at L-digitata_M_contig101413:749..925+

>mRNA_L-digitata_M_contig101413.2.1 ID=mRNA_L-digitata_M_contig101413.2.1|Name=mRNA_L-digitata_M_contig101413.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=177bp|location=Sequence derived from alignment at L-digitata_M_contig101413:749..925+ (Laminaria digitata LdigPH10_18mv male)
ATGAAGTGCCCTTTCTGCGGATCAGACGACACCCAGGTAAAGGATTCCCG
GCCGACCGAGGATAATACGGCCATCCGGCGGCGGCGGTCGTGCACCTCCT
GCGGTGCGCGTTTCACGACGTTCGAGCGCGTCCAGCTTCGGGAACTTACG
GTCCTGAAGTCCGGCGGTAGACGCGAA
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