mRNA_L-digitata_M_contig10014.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10014.1.1
Unique NamemRNA_L-digitata_M_contig10014.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig10014.1.1 vs. uniprot
Match: D8LDJ5_ECTSI (Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDJ5_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 4.310e-18
Identity = 40/53 (75.47%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    7 VSSLCGQHCINNLVQGSSYSAPDLADIAHELDRQERQHMLSEGANTPDALRLV 165
            +SSLCGQHCINNLVQ +SYSA DLADIA ELD QERQHML+ G++TPDAL+ +
Sbjct:    1 MSSLCGQHCINNLVQAASYSAADLADIALELDDQERQHMLAAGSDTPDALKFL 53
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BLAST of mRNA_L-digitata_M_contig10014.1.1 vs. uniprot
Match: A0A836CJ83_9STRA (Ubiquitinyl hydrolase 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ83_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 9.940e-16
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 KQVSSLCGQHCINNLVQGSSYSAPDLADIAHELDRQERQHMLSEGANTPDALRL 162
            KQ SSLCGQHC+NNL+Q   ++APDLADIAH LD +ERQ ML  G +TPDAL+ 
Sbjct:    8 KQESSLCGQHCLNNLLQACIFTAPDLADIAHVLDAKERQLMLELGHSTPDALKF 61
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BLAST of mRNA_L-digitata_M_contig10014.1.1 vs. uniprot
Match: A0A7S4DEZ6_HETAK (Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DEZ6_HETAK)

HSP 1 Score: 71.6 bits (174), Expect = 2.100e-14
Identity = 33/55 (60.00%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 KQVSSLCGQHCINNLVQGSSYSAPDLADIAHELDRQERQHMLSEGANTPDALRLV 165
            KQ S LCGQHC+NNL+QG  + AP LA I  ELD +ER+ ML  GA+TP+ALR +
Sbjct:   16 KQFSLLCGQHCLNNLLQGPYFDAPGLAQIGQELDAEERRVMLEAGADTPEALRFL 70
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BLAST of mRNA_L-digitata_M_contig10014.1.1 vs. uniprot
Match: A0A7S2SLM5_9STRA (Ubiquitinyl hydrolase 1 n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SLM5_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 4.950e-13
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 KQVSSLCGQHCINNLVQGSSYSAPDLADIAHELDRQERQHMLSEGANTPDALRLV 165
            +Q S+LCGQHC+NNL+QG+ +S  DLADIA E+DR ERQ ML  G  TP+AL+ +
Sbjct:   20 RQESALCGQHCLNNLLQGTYFSPGDLADIAAEMDRLERQMMLEMGDATPEALKFL 74
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BLAST of mRNA_L-digitata_M_contig10014.1.1 vs. uniprot
Match: D3BL88_POLPP (Ubiquitinyl hydrolase 1 n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BL88_POLPP)

HSP 1 Score: 64.3 bits (155), Expect = 7.770e-11
Identity = 28/54 (51.85%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    4 QVSSLCGQHCINNLVQGSSYSAPDLADIAHELDRQERQHMLSEGANTPDALRLV 165
            QV+SLCG HC+N L+QGS ++A DLA++AHELD +ER  ML  G ++ D ++  
Sbjct:    9 QVASLCGVHCLNTLLQGSYFTAVDLANVAHELDEKERDVMLQAGVDSSDFIKFA 62
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BLAST of mRNA_L-digitata_M_contig10014.1.1 vs. uniprot
Match: A0A8J4PS66_9MYCE (Ubiquitinyl hydrolase 1 n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PS66_9MYCE)

HSP 1 Score: 64.3 bits (155), Expect = 8.310e-11
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 KQVSSLCGQHCINNLVQGSSYSAPDLADIAHELDRQERQHMLSEGANTPDALRLV 165
            KQV+SLCG HC+N L+QGS ++  DLA +A ELD+QER+ M   G  T D L+ V
Sbjct:   13 KQVASLCGVHCLNTLLQGSYFTEIDLAHVAQELDKQEREMMSENGFETKDFLKFV 67
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BLAST of mRNA_L-digitata_M_contig10014.1.1 vs. uniprot
Match: A0A7I8VG35_9ANNE (Ubiquitinyl hydrolase 1 n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8VG35_9ANNE)

HSP 1 Score: 63.2 bits (152), Expect = 1.840e-10
Identity = 28/48 (58.33%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 KQVSSLCGQHCINNLVQGSSYSAPDLADIAHELDRQERQHMLSEGANT 144
            KQ  SLCGQHC+NNL+QG+ +SA DLAD+A +LD  ER H+ S  ++T
Sbjct:    8 KQEGSLCGQHCLNNLLQGAYFSAVDLADLASQLDETERSHLGSNSSST 55
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BLAST of mRNA_L-digitata_M_contig10014.1.1 vs. uniprot
Match: UPI000644D6F3 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644D6F3)

HSP 1 Score: 61.6 bits (148), Expect = 7.320e-10
Identity = 26/55 (47.27%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 KQVSSLCGQHCINNLVQGSSYSAPDLADIAHELDRQERQHMLSEGANTPDALRLV 165
            KQ++SLCG HC+N+L+QGS ++A DLA++AH+LD++E   M   G +T D ++  
Sbjct:    8 KQLASLCGVHCLNSLLQGSYFTAVDLANVAHQLDQEEMDVMSQAGMDTSDFIKFA 62
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BLAST of mRNA_L-digitata_M_contig10014.1.1 vs. uniprot
Match: A0A5N5T5Y4_9CRUS (Ubiquitinyl hydrolase 1 n=1 Tax=Armadillidium nasatum TaxID=96803 RepID=A0A5N5T5Y4_9CRUS)

HSP 1 Score: 57.8 bits (138), Expect = 1.220e-9
Identity = 25/50 (50.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 KQVSSLCGQHCINNLVQGSSYSAPDLADIAHELDRQERQHMLSEGANTPD 150
            KQ  SLCGQHC+NNL+Q   +SA +LA+IA ++D++E + M   G NT +
Sbjct:   29 KQEGSLCGQHCLNNLLQDQYFSAVELAEIAQQMDQEETRRMAELGTNTSE 78
[Close]
BLAST of mRNA_L-digitata_M_contig10014.1.1 vs. uniprot
Match: A0A8J5MRG4_HOMAM (Ubiquitinyl hydrolase 1 n=3 Tax=Homarus americanus TaxID=6706 RepID=A0A8J5MRG4_HOMAM)

HSP 1 Score: 60.8 bits (146), Expect = 1.810e-9
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    1 KQVSSLCGQHCINNLVQGSSYSAPDLADIAHELDRQERQHMLSEGANTPDALRLV 165
            KQ   LCGQHC+NNL+QG  ++A DLADIA ++D+ E+ HM   G +T +  R +
Sbjct:    8 KQDGLLCGQHCLNNLLQGQYFTAVDLADIAQQMDQAEQSHMAELGMHTDEFRRFM 62
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10014.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDJ5_ECTSI4.310e-1875.47Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CJ83_9STRA9.940e-1666.67Ubiquitinyl hydrolase 1 n=1 Tax=Tribonema minus Ta... [more]
A0A7S4DEZ6_HETAK2.100e-1460.00Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Heteros... [more]
A0A7S2SLM5_9STRA4.950e-1360.00Ubiquitinyl hydrolase 1 n=2 Tax=Rhizochromulina ma... [more]
D3BL88_POLPP7.770e-1151.85Ubiquitinyl hydrolase 1 n=1 Tax=Polysphondylium pa... [more]
A0A8J4PS66_9MYCE8.310e-1154.55Ubiquitinyl hydrolase 1 n=1 Tax=Polysphondylium vi... [more]
A0A7I8VG35_9ANNE1.840e-1058.33Ubiquitinyl hydrolase 1 n=1 Tax=Dimorphilus gyroci... [more]
UPI000644D6F37.320e-1047.27hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A5N5T5Y4_9CRUS1.220e-950.00Ubiquitinyl hydrolase 1 n=1 Tax=Armadillidium nasa... [more]
A0A8J5MRG4_HOMAM1.810e-949.09Ubiquitinyl hydrolase 1 n=3 Tax=Homarus americanus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10014contigL-digitata_M_contig10014:236..400 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LDJ5
Preferred nameATXN3
PFAMsJosephin,SUIM_assoc,UBX,UIM
Model size165
Max annot lvl2759|Eukaryota
KEGG koko:K11863
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000226,GO:0001012,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005759,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006325,GO:0006464,GO:0006476,GO:0006508,GO:0006511,GO:0006515,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007267,GO:0007268,GO:0007275,GO:0007399,GO:0007610,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010604,GO:0010810,GO:0016020,GO:0016043,GO:0016234,GO:0016569,GO:0016570,GO:0016575,GO:0016579,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0019899,GO:0019941,GO:0023052,GO:0030029,GO:0030036,GO:0030155,GO:0030162,GO:0030163,GO:0031090,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031625,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0033036,GO:0033554,GO:0034605,GO:0034641,GO:0034976,GO:0035520,GO:0035601,GO:0035640,GO:0035966,GO:0035967,GO:0036211,GO:0036459,GO:0036503,GO:0042176,GO:0042221,GO:0042405,GO:0042802,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0044212,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045103,GO:0045104,GO:0045732,GO:0045862,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051117,GO:0051171,GO:0051173,GO:0051179,GO:0051246,GO:0051247,GO:0051276,GO:0051603,GO:0051716,GO:0051788,GO:0060255,GO:0061136,GO:0061578,GO:0065007,GO:0070011,GO:0070013,GO:0070536,GO:0070646,GO:0070647,GO:0070887,GO:0070932,GO:0071108,GO:0071218,GO:0071310,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097159,GO:0098732,GO:0098916,GO:0099536,GO:0099537,GO:0101005,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1904292,GO:1904294,GO:1904327,GO:1904379,GO:1905897,GO:1905898,GO:1990380
Exons1
Evalue7.07e-19
EggNOG OGsKOG2935@1|root,KOG2935@2759|Eukaryota
Descriptionprotein localization to cytosolic proteasome complex
Cds size165
COG categoryO
BRITEko00000,ko00001,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406604.0283716-CDS-L-digitata_M_contig10014:235..4001682406604.0283716-CDS-L-digitata_M_contig10014:235..400Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10014 236..400 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10014.1.1prot_L-digitata_M_contig10014.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10014 236..400 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10014.1.1

>prot_L-digitata_M_contig10014.1.1 ID=prot_L-digitata_M_contig10014.1.1|Name=mRNA_L-digitata_M_contig10014.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=55bp
KQVSSLCGQHCINNLVQGSSYSAPDLADIAHELDRQERQHMLSEGANTPD
ALRLV
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mRNA from alignment at L-digitata_M_contig10014:236..400-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10014.1.1 ID=mRNA_L-digitata_M_contig10014.1.1|Name=mRNA_L-digitata_M_contig10014.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=165bp|location=Sequence derived from alignment at L-digitata_M_contig10014:236..400- (Laminaria digitata LdigPH10_18mv male)
AAGCAAGTGTCGAGCCTCTGCGGGCAGCACTGCATCAACAACTTGGTGCA
AGGGTCTAGCTACTCGGCCCCTGATCTCGCGGACATCGCCCACGAACTGG
ACCGGCAGGAAAGACAGCACATGCTTTCAGAGGGGGCCAATACTCCGGAC
GCCTTGAGGTTAGTC
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Coding sequence (CDS) from alignment at L-digitata_M_contig10014:236..400-

>mRNA_L-digitata_M_contig10014.1.1 ID=mRNA_L-digitata_M_contig10014.1.1|Name=mRNA_L-digitata_M_contig10014.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=165bp|location=Sequence derived from alignment at L-digitata_M_contig10014:236..400- (Laminaria digitata LdigPH10_18mv male)
AAGCAAGTGTCGAGCCTCTGCGGGCAGCACTGCATCAACAACTTGGTGCA
AGGGTCTAGCTACTCGGCCCCTGATCTCGCGGACATCGCCCACGAACTGG
ACCGGCAGGAAAGACAGCACATGCTTTCAGAGGGGGCCAATACTCCGGAC
GCCTTGAGGTTAGTC
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